Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13320

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,039,322	-		DDA3937_RS13315	0.12	-2.8
3,039,324	+		DDA3937_RS13315	0.13	-0.8
3,039,325	-		DDA3937_RS13315	0.13	-0.8
3,039,325	-		DDA3937_RS13315	0.13	-2.0
3,039,325	-		DDA3937_RS13315	0.13	+0.8
3,039,343	+		DDA3937_RS13315	0.14	-0.1
3,039,378	+		DDA3937_RS13315	0.17	-1.1
3,039,378	+		DDA3937_RS13315	0.17	-0.8
3,039,378	+		DDA3937_RS13315	0.17	-1.6
3,039,378	+		DDA3937_RS13315	0.17	-0.8
3,039,379	-		DDA3937_RS13315	0.17	-0.2
3,039,379	-		DDA3937_RS13315	0.17	+1.1
3,039,379	-		DDA3937_RS13315	0.17	-1.0
3,039,379	-		DDA3937_RS13315	0.17	-0.0
3,039,379	-		DDA3937_RS13315	0.17	-0.8
3,039,379	-		DDA3937_RS13315	0.17	-0.6
3,039,379	-		DDA3937_RS13315	0.17	-1.8
3,039,446	-		DDA3937_RS13315	0.23	-1.2
3,039,555	+		DDA3937_RS13315	0.33	-2.4
3,039,555	+		DDA3937_RS13315	0.33	-1.9
3,039,555	+		DDA3937_RS13315	0.33	-1.3
3,039,555	+		DDA3937_RS13315	0.33	-2.0
3,039,562	-				-1.8
3,039,562	-		DDA3937_RS13315	0.34	-1.4
3,039,652	-				-1.6
3,039,653	+		DDA3937_RS13315	0.42	+0.8
3,039,653	+		DDA3937_RS13315	0.42	-0.8
3,039,653	+		DDA3937_RS13315	0.42	-0.6
3,039,653	+		DDA3937_RS13315	0.42	-0.8
3,039,653	+		DDA3937_RS13315	0.42	+1.6
3,039,653	+		DDA3937_RS13315	0.42	-0.3
3,039,653	+		DDA3937_RS13315	0.42	-1.8
3,039,653	+		DDA3937_RS13315	0.42	-0.2
3,039,653	+		DDA3937_RS13315	0.42	-1.6
3,039,653	+		DDA3937_RS13315	0.42	-1.0
3,039,653	+		DDA3937_RS13315	0.42	-1.9
3,039,653	+		DDA3937_RS13315	0.42	-2.2
3,039,653	+		DDA3937_RS13315	0.42	-0.6
3,039,653	+		DDA3937_RS13315	0.42	-1.3
3,039,653	+		DDA3937_RS13315	0.42	-1.6
3,039,654	-		DDA3937_RS13315	0.42	-2.7
3,039,654	-		DDA3937_RS13315	0.42	-2.6
3,039,654	-		DDA3937_RS13315	0.42	-1.3
3,039,654	-		DDA3937_RS13315	0.42	+1.5
3,039,654	-		DDA3937_RS13315	0.42	-0.9
3,039,654	-		DDA3937_RS13315	0.42	-1.5
3,039,654	-		DDA3937_RS13315	0.42	-0.8
3,039,654	-		DDA3937_RS13315	0.42	-3.8
3,039,654	-		DDA3937_RS13315	0.42	-0.4
3,039,654	-		DDA3937_RS13315	0.42	-1.3
3,039,681	+		DDA3937_RS13315	0.44	-0.9
3,039,681	+		DDA3937_RS13315	0.44	+0.2
3,039,681	+		DDA3937_RS13315	0.44	+0.8
3,039,681	+		DDA3937_RS13315	0.44	-0.8
3,039,681	+		DDA3937_RS13315	0.44	+0.3
3,039,681	+		DDA3937_RS13315	0.44	-2.0
3,039,682	-		DDA3937_RS13315	0.44	-0.4
3,039,682	-		DDA3937_RS13315	0.44	-1.6
3,039,682	-		DDA3937_RS13315	0.44	-1.2
3,039,897	+		DDA3937_RS13315	0.63	-0.3
3,040,036	+		DDA3937_RS13315	0.75	-2.4
3,040,078	+		DDA3937_RS13315	0.79	-1.2
3,040,232	-				-0.8
3,040,255	+				-0.5
3,040,255	+				-0.8
3,040,255	+				-0.8
3,040,256	-				+0.8
3,040,256	-				-1.2
3,040,305	-				-0.8
3,040,392	+				-1.0
3,040,393	-				-0.7
3,040,407	+				-0.2
3,040,407	+				+0.2
3,040,407	+				+1.8
3,040,408	-				-1.6
3,040,408	-				-0.3
3,040,408	-				-1.0
3,040,408	-				-0.9
3,040,483	+		DDA3937_RS13320	0.14	-0.8
3,040,548	+		DDA3937_RS13320	0.20	-0.2
3,040,548	+		DDA3937_RS13320	0.20	-1.5
3,040,548	+		DDA3937_RS13320	0.20	-1.7
3,040,549	-		DDA3937_RS13320	0.20	-3.4
3,040,549	-		DDA3937_RS13320	0.20	-1.6
3,040,549	-		DDA3937_RS13320	0.20	-0.8
3,040,549	-		DDA3937_RS13320	0.20	-1.0
3,040,558	+		DDA3937_RS13320	0.21	+0.1
3,040,558	+		DDA3937_RS13320	0.21	+0.8
3,040,558	+		DDA3937_RS13320	0.21	-1.0
3,040,558	+		DDA3937_RS13320	0.21	-1.7
3,040,562	+		DDA3937_RS13320	0.21	-2.9
3,040,562	+		DDA3937_RS13320	0.21	-1.2
3,040,562	+		DDA3937_RS13320	0.21	+1.1
3,040,562	+		DDA3937_RS13320	0.21	-1.4
3,040,562	+		DDA3937_RS13320	0.21	+0.5
3,040,562	+		DDA3937_RS13320	0.21	-1.4
3,040,563	-		DDA3937_RS13320	0.21	-1.2
3,040,563	-		DDA3937_RS13320	0.21	-2.0
3,040,563	-		DDA3937_RS13320	0.21	-1.3
3,040,563	-		DDA3937_RS13320	0.21	+0.3
3,040,629	-		DDA3937_RS13320	0.27	+0.4
3,040,629	-		DDA3937_RS13320	0.27	-2.1
3,040,674	-		DDA3937_RS13320	0.31	-0.2
3,040,675	+		DDA3937_RS13320	0.31	-0.4
3,040,675	+		DDA3937_RS13320	0.31	-2.8
3,040,675	+		DDA3937_RS13320	0.31	+0.2
3,040,675	+		DDA3937_RS13320	0.31	-0.5
3,040,675	+		DDA3937_RS13320	0.31	-0.5
3,040,675	+		DDA3937_RS13320	0.31	-0.7
3,040,675	+		DDA3937_RS13320	0.31	-1.7
3,040,675	+		DDA3937_RS13320	0.31	-2.2
3,040,676	-		DDA3937_RS13320	0.31	-0.5
3,040,676	-		DDA3937_RS13320	0.31	-1.1
3,040,676	-		DDA3937_RS13320	0.31	-2.4
3,040,734	+		DDA3937_RS13320	0.36	-1.3
3,040,762	+		DDA3937_RS13320	0.38	-0.8
3,040,762	+		DDA3937_RS13320	0.38	-0.2
3,040,762	+		DDA3937_RS13320	0.38	-3.3
3,040,763	-		DDA3937_RS13320	0.38	-1.4
3,040,763	-		DDA3937_RS13320	0.38	+0.4
3,040,763	-		DDA3937_RS13320	0.38	-1.4
3,040,763	-		DDA3937_RS13320	0.38	-0.4
3,040,782	+		DDA3937_RS13320	0.40	-1.2
3,040,782	+		DDA3937_RS13320	0.40	+0.2
3,040,782	+		DDA3937_RS13320	0.40	-0.8
3,040,782	+		DDA3937_RS13320	0.40	-1.4
3,040,783	-		DDA3937_RS13320	0.40	-1.8
3,040,783	-		DDA3937_RS13320	0.40	-1.2
3,040,783	-		DDA3937_RS13320	0.40	-0.8
3,040,848	+		DDA3937_RS13320	0.45	-2.0
3,040,849	-		DDA3937_RS13320	0.45	-1.4
3,040,865	+		DDA3937_RS13320	0.47	-1.4
3,040,877	+		DDA3937_RS13320	0.48	-1.2
3,040,920	+		DDA3937_RS13320	0.51	-3.4
3,040,920	+		DDA3937_RS13320	0.51	-0.9
3,040,963	+		DDA3937_RS13320	0.55	-0.1
3,040,963	+		DDA3937_RS13320	0.55	-0.4
3,040,964	-		DDA3937_RS13320	0.55	-0.6
3,040,964	-		DDA3937_RS13320	0.55	-0.0
3,040,964	-		DDA3937_RS13320	0.55	-1.8
3,041,006	+		DDA3937_RS13320	0.59	+0.6
3,041,006	+		DDA3937_RS13320	0.59	-0.2
3,041,043	+		DDA3937_RS13320	0.62	-1.2
3,041,044	-		DDA3937_RS13320	0.62	-1.1
3,041,046	+		DDA3937_RS13320	0.62	-1.2
3,041,060	+		DDA3937_RS13320	0.63	-1.4
3,041,060	+		DDA3937_RS13320	0.63	-0.8
3,041,060	+		DDA3937_RS13320	0.63	+0.8
3,041,060	+		DDA3937_RS13320	0.63	-0.6
3,041,060	+		DDA3937_RS13320	0.63	-1.1
3,041,060	+				-0.8
3,041,060	+		DDA3937_RS13320	0.63	-1.3
3,041,060	+		DDA3937_RS13320	0.63	-1.7
3,041,060	+		DDA3937_RS13320	0.63	-2.0
3,041,061	-		DDA3937_RS13320	0.63	-0.8
3,041,061	-		DDA3937_RS13320	0.63	-2.2
3,041,061	-		DDA3937_RS13320	0.63	+1.5
3,041,122	+		DDA3937_RS13320	0.69	-3.2
3,041,149	-		DDA3937_RS13320	0.71	-1.3
3,041,149	-		DDA3937_RS13320	0.71	-1.4
3,041,149	-		DDA3937_RS13320	0.71	-1.7
3,041,159	+				+0.2
3,041,160	-		DDA3937_RS13320	0.72	-0.1
3,041,160	-		DDA3937_RS13320	0.72	+0.3
3,041,223	+		DDA3937_RS13320	0.77	-1.4
3,041,259	-		DDA3937_RS13320	0.80	-0.9
3,041,287	-		DDA3937_RS13320	0.82	-2.2
3,041,287	-		DDA3937_RS13320	0.82	-1.0
3,041,295	+		DDA3937_RS13320	0.83	-0.2
3,041,296	-		DDA3937_RS13320	0.83	-2.2
3,041,296	-		DDA3937_RS13320	0.83	-2.2
3,041,370	+		DDA3937_RS13320	0.90	-0.2
3,041,482	+				-0.8
3,041,482	+				-0.9
3,041,482	+				-1.1
3,041,482	+				-2.8
3,041,482	+				-0.4
3,041,482	+				-0.2
3,041,482	+				-1.6
3,041,482	+				+0.4
3,041,482	+				+0.8
3,041,482	+				-2.0
3,041,482	+				+0.8
3,041,482	+				+0.4
3,041,482	+				-2.0
3,041,483	-				-0.2
3,041,483	-				+0.7
3,041,483	-				+0.4
3,041,483	-				-1.0
3,041,483	-				-0.1
3,041,493	+				-3.3
3,041,493	+				-0.0
3,041,493	+				-0.2
3,041,494	-				-1.8
3,041,494	-				+0.5
3,041,507	+				-1.7
3,041,612	+				-0.2
3,041,612	+				-0.2
3,041,613	-				-1.5
3,041,656	+				-1.8
3,041,656	+				-0.7
3,041,656	+				-0.5
3,041,656	+				-0.2
3,041,738	-		DDA3937_RS13325	0.14	-2.2
3,041,771	-		DDA3937_RS13325	0.16	-2.6
3,041,836	+		DDA3937_RS13325	0.22	-1.2
3,041,836	+				-1.5
3,041,836	+		DDA3937_RS13325	0.22	-1.8
3,041,836	+		DDA3937_RS13325	0.22	-0.3
3,041,837	-		DDA3937_RS13325	0.22	-0.8
3,041,860	+		DDA3937_RS13325	0.24	-2.4
3,041,860	+		DDA3937_RS13325	0.24	-0.2
3,041,861	-		DDA3937_RS13325	0.24	-0.2
3,041,861	-		DDA3937_RS13325	0.24	-1.2
3,041,861	-		DDA3937_RS13325	0.24	-0.2
3,041,861	-		DDA3937_RS13325	0.24	-2.0
3,041,861	-		DDA3937_RS13325	0.24	-0.8
3,041,866	+		DDA3937_RS13325	0.24	-1.9
3,041,866	+		DDA3937_RS13325	0.24	-0.8
3,041,867	-		DDA3937_RS13325	0.25	-2.2
3,041,867	-		DDA3937_RS13325	0.25	-0.5
3,041,867	-		DDA3937_RS13325	0.25	-2.5
3,041,913	-		DDA3937_RS13325	0.28	-1.3
3,041,935	+		DDA3937_RS13325	0.30	-1.2
3,041,936	-		DDA3937_RS13325	0.30	-0.4
3,041,936	-		DDA3937_RS13325	0.30	-1.2
3,041,936	-		DDA3937_RS13325	0.30	+0.8
3,041,944	+		DDA3937_RS13325	0.31	-0.8
3,041,944	+		DDA3937_RS13325	0.31	-1.1
3,041,945	-		DDA3937_RS13325	0.31	-0.6
3,041,945	-		DDA3937_RS13325	0.31	-1.1
3,041,945	-		DDA3937_RS13325	0.31	-0.7
3,041,945	-		DDA3937_RS13325	0.31	+0.1
3,041,948	+		DDA3937_RS13325	0.31	-1.2
3,041,949	-		DDA3937_RS13325	0.32	-2.5
3,041,949	-		DDA3937_RS13325	0.32	+0.0
3,041,949	-		DDA3937_RS13325	0.32	-0.8
3,041,978	+		DDA3937_RS13325	0.34	-2.7
3,041,980	+		DDA3937_RS13325	0.34	-0.6
3,042,035	+		DDA3937_RS13325	0.39	+0.1
3,042,086	-		DDA3937_RS13325	0.43	-0.7
3,042,190	+		DDA3937_RS13325	0.52	-0.2
3,042,244	+		DDA3937_RS13325	0.57	-0.0
3,042,244	+		DDA3937_RS13325	0.57	-1.5
3,042,245	-		DDA3937_RS13325	0.57	-1.8
3,042,276	-		DDA3937_RS13325	0.59	+1.8
3,042,305	+		DDA3937_RS13325	0.62	-2.7
3,042,306	-		DDA3937_RS13325	0.62	-1.4
3,042,310	+		DDA3937_RS13325	0.62	-1.3
3,042,329	+				-1.2