Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS13285 and DDA3937_RS13290 are separated by 68 nucleotides DDA3937_RS13290 and DDA3937_RS13295 are separated by 531 nucleotides
DDA3937_RS13285: DDA3937_RS13285 - MCP four helix bundle domain-containing protein, at 3,031,712 to 3,033,316
_RS13285
DDA3937_RS13290: DDA3937_RS13290 - phosphate starvation-inducible protein PhoH, at 3,033,385 to 3,034,173
_RS13290
DDA3937_RS13295: DDA3937_RS13295 - flagella biosynthesis regulatory protein FliZ, at 3,034,705 to 3,035,217
_RS13295
Position (kb)
3033
3034
3035 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3032.404 kb on - strand, within DDA3937_RS13285 at 3032.462 kb on - strand, within DDA3937_RS13285 at 3032.617 kb on + strand, within DDA3937_RS13285 at 3032.617 kb on + strand, within DDA3937_RS13285 at 3032.617 kb on + strand, within DDA3937_RS13285 at 3032.617 kb on + strand, within DDA3937_RS13285 at 3032.618 kb on - strand, within DDA3937_RS13285 at 3032.659 kb on + strand, within DDA3937_RS13285 at 3032.659 kb on + strand, within DDA3937_RS13285 at 3032.659 kb on + strand, within DDA3937_RS13285 at 3032.659 kb on + strand, within DDA3937_RS13285 at 3032.659 kb on + strand, within DDA3937_RS13285 at 3032.731 kb on + strand, within DDA3937_RS13285 at 3032.731 kb on + strand, within DDA3937_RS13285 at 3032.731 kb on + strand, within DDA3937_RS13285 at 3032.731 kb on + strand, within DDA3937_RS13285 at 3032.731 kb on + strand, within DDA3937_RS13285 at 3032.732 kb on - strand, within DDA3937_RS13285 at 3032.732 kb on - strand at 3032.732 kb on - strand, within DDA3937_RS13285 at 3032.732 kb on - strand, within DDA3937_RS13285 at 3032.732 kb on - strand, within DDA3937_RS13285 at 3032.776 kb on - strand, within DDA3937_RS13285 at 3032.776 kb on - strand, within DDA3937_RS13285 at 3033.048 kb on + strand, within DDA3937_RS13285 at 3033.049 kb on - strand, within DDA3937_RS13285 at 3033.263 kb on - strand at 3033.274 kb on + strand at 3033.288 kb on + strand at 3033.288 kb on + strand at 3033.288 kb on + strand at 3033.288 kb on + strand at 3033.288 kb on + strand at 3033.289 kb on - strand at 3033.289 kb on - strand at 3033.289 kb on - strand at 3033.289 kb on - strand at 3033.289 kb on - strand at 3033.289 kb on - strand at 3033.289 kb on - strand at 3033.371 kb on - strand at 3033.392 kb on + strand at 3033.392 kb on + strand at 3033.393 kb on - strand at 3033.405 kb on + strand at 3033.405 kb on + strand at 3033.406 kb on - strand at 3033.406 kb on - strand at 3033.460 kb on + strand at 3033.460 kb on + strand at 3033.537 kb on + strand, within DDA3937_RS13290 at 3033.537 kb on + strand, within DDA3937_RS13290 at 3033.541 kb on - strand, within DDA3937_RS13290 at 3033.666 kb on + strand, within DDA3937_RS13290 at 3033.667 kb on - strand, within DDA3937_RS13290 at 3033.667 kb on - strand, within DDA3937_RS13290 at 3033.667 kb on - strand, within DDA3937_RS13290 at 3033.667 kb on - strand, within DDA3937_RS13290 at 3033.668 kb on + strand, within DDA3937_RS13290 at 3033.668 kb on + strand, within DDA3937_RS13290 at 3033.668 kb on + strand, within DDA3937_RS13290 at 3033.669 kb on - strand, within DDA3937_RS13290 at 3033.669 kb on - strand, within DDA3937_RS13290 at 3033.669 kb on - strand, within DDA3937_RS13290 at 3033.688 kb on + strand, within DDA3937_RS13290 at 3033.689 kb on - strand, within DDA3937_RS13290 at 3033.716 kb on + strand, within DDA3937_RS13290 at 3033.716 kb on + strand, within DDA3937_RS13290 at 3033.716 kb on + strand, within DDA3937_RS13290 at 3033.716 kb on + strand, within DDA3937_RS13290 at 3033.716 kb on + strand, within DDA3937_RS13290 at 3033.717 kb on - strand, within DDA3937_RS13290 at 3033.717 kb on - strand, within DDA3937_RS13290 at 3033.758 kb on + strand, within DDA3937_RS13290 at 3033.758 kb on + strand, within DDA3937_RS13290 at 3033.758 kb on + strand, within DDA3937_RS13290 at 3033.758 kb on + strand, within DDA3937_RS13290 at 3033.758 kb on + strand, within DDA3937_RS13290 at 3033.758 kb on + strand, within DDA3937_RS13290 at 3033.773 kb on + strand at 3033.774 kb on - strand, within DDA3937_RS13290 at 3033.855 kb on + strand, within DDA3937_RS13290 at 3033.855 kb on + strand, within DDA3937_RS13290 at 3033.855 kb on + strand, within DDA3937_RS13290 at 3033.855 kb on + strand, within DDA3937_RS13290 at 3033.856 kb on - strand, within DDA3937_RS13290 at 3033.856 kb on - strand, within DDA3937_RS13290 at 3033.856 kb on - strand, within DDA3937_RS13290 at 3033.871 kb on - strand, within DDA3937_RS13290 at 3033.947 kb on - strand, within DDA3937_RS13290 at 3033.947 kb on - strand, within DDA3937_RS13290 at 3033.947 kb on - strand at 3033.955 kb on - strand, within DDA3937_RS13290 at 3033.961 kb on + strand, within DDA3937_RS13290 at 3033.962 kb on - strand, within DDA3937_RS13290 at 3033.974 kb on + strand, within DDA3937_RS13290 at 3033.974 kb on + strand, within DDA3937_RS13290 at 3033.974 kb on + strand, within DDA3937_RS13290 at 3033.974 kb on + strand, within DDA3937_RS13290 at 3033.975 kb on - strand, within DDA3937_RS13290 at 3033.975 kb on - strand, within DDA3937_RS13290 at 3034.174 kb on - strand at 3034.184 kb on + strand at 3034.185 kb on - strand at 3034.185 kb on - strand at 3034.185 kb on - strand at 3034.185 kb on - strand at 3034.185 kb on - strand at 3034.206 kb on - strand at 3034.257 kb on + strand at 3034.258 kb on - strand at 3034.264 kb on + strand at 3034.380 kb on - strand at 3034.491 kb on + strand at 3034.491 kb on + strand at 3034.492 kb on - strand at 3034.519 kb on - strand at 3034.519 kb on - strand at 3034.519 kb on - strand at 3034.522 kb on + strand at 3034.522 kb on + strand at 3034.522 kb on + strand at 3034.523 kb on - strand at 3034.523 kb on - strand at 3034.596 kb on + strand at 3034.596 kb on + strand at 3034.610 kb on + strand at 3034.611 kb on - strand at 3034.611 kb on - strand at 3034.612 kb on + strand at 3034.634 kb on + strand at 3034.651 kb on - strand at 3034.651 kb on - strand at 3034.655 kb on + strand at 3034.655 kb on + strand at 3034.656 kb on - strand at 3034.662 kb on - strand at 3034.706 kb on + strand at 3034.707 kb on - strand at 3034.730 kb on + strand at 3034.731 kb on - strand at 3034.731 kb on - strand at 3034.761 kb on - strand, within DDA3937_RS13295 at 3034.764 kb on + strand, within DDA3937_RS13295 at 3034.764 kb on + strand, within DDA3937_RS13295 at 3034.764 kb on + strand, within DDA3937_RS13295 at 3034.764 kb on + strand, within DDA3937_RS13295 at 3034.765 kb on - strand, within DDA3937_RS13295 at 3034.765 kb on - strand, within DDA3937_RS13295 at 3034.765 kb on - strand, within DDA3937_RS13295 at 3034.765 kb on - strand, within DDA3937_RS13295 at 3034.774 kb on + strand, within DDA3937_RS13295 at 3034.774 kb on + strand, within DDA3937_RS13295 at 3034.774 kb on + strand, within DDA3937_RS13295 at 3034.775 kb on - strand, within DDA3937_RS13295 at 3034.775 kb on - strand, within DDA3937_RS13295 at 3034.777 kb on - strand, within DDA3937_RS13295 at 3034.777 kb on - strand, within DDA3937_RS13295 at 3034.777 kb on - strand, within DDA3937_RS13295 at 3034.787 kb on + strand, within DDA3937_RS13295 at 3034.797 kb on + strand, within DDA3937_RS13295 at 3034.798 kb on - strand, within DDA3937_RS13295 at 3034.798 kb on - strand, within DDA3937_RS13295 at 3034.798 kb on - strand, within DDA3937_RS13295 at 3034.859 kb on + strand, within DDA3937_RS13295 at 3034.889 kb on + strand, within DDA3937_RS13295 at 3034.889 kb on + strand, within DDA3937_RS13295 at 3034.890 kb on - strand, within DDA3937_RS13295 at 3034.890 kb on - strand, within DDA3937_RS13295 at 3034.906 kb on - strand, within DDA3937_RS13295 at 3034.935 kb on - strand, within DDA3937_RS13295 at 3034.961 kb on + strand, within DDA3937_RS13295 at 3034.962 kb on - strand, within DDA3937_RS13295 at 3034.962 kb on - strand, within DDA3937_RS13295 at 3035.006 kb on - strand, within DDA3937_RS13295 at 3035.040 kb on + strand, within DDA3937_RS13295 at 3035.040 kb on + strand, within DDA3937_RS13295 at 3035.040 kb on + strand, within DDA3937_RS13295 at 3035.041 kb on - strand, within DDA3937_RS13295 at 3035.082 kb on + strand, within DDA3937_RS13295 at 3035.105 kb on - strand, within DDA3937_RS13295
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,032,404 - DDA3937_RS13285 0.43 -1.0 3,032,462 - DDA3937_RS13285 0.47 +1.3 3,032,617 + DDA3937_RS13285 0.56 -0.1 3,032,617 + DDA3937_RS13285 0.56 -0.4 3,032,617 + DDA3937_RS13285 0.56 +0.8 3,032,617 + DDA3937_RS13285 0.56 -0.2 3,032,618 - DDA3937_RS13285 0.56 -1.1 3,032,659 + DDA3937_RS13285 0.59 -0.1 3,032,659 + DDA3937_RS13285 0.59 -0.2 3,032,659 + DDA3937_RS13285 0.59 +0.8 3,032,659 + DDA3937_RS13285 0.59 +1.0 3,032,659 + DDA3937_RS13285 0.59 +0.3 3,032,731 + DDA3937_RS13285 0.63 -0.8 3,032,731 + DDA3937_RS13285 0.63 -0.4 3,032,731 + DDA3937_RS13285 0.63 -0.2 3,032,731 + DDA3937_RS13285 0.63 +0.1 3,032,731 + DDA3937_RS13285 0.63 +0.3 3,032,732 - DDA3937_RS13285 0.64 -0.0 3,032,732 - -0.2 3,032,732 - DDA3937_RS13285 0.64 +0.2 3,032,732 - DDA3937_RS13285 0.64 +0.0 3,032,732 - DDA3937_RS13285 0.64 +0.3 3,032,776 - DDA3937_RS13285 0.66 +0.1 3,032,776 - DDA3937_RS13285 0.66 +1.1 3,033,048 + DDA3937_RS13285 0.83 +0.8 3,033,049 - DDA3937_RS13285 0.83 -0.5 3,033,263 - +0.6 3,033,274 + +0.0 3,033,288 + -0.4 3,033,288 + -0.7 3,033,288 + -1.0 3,033,288 + +2.8 3,033,288 + +0.3 3,033,289 - -0.5 3,033,289 - +0.8 3,033,289 - +0.1 3,033,289 - -0.0 3,033,289 - +0.4 3,033,289 - -0.2 3,033,289 - -0.5 3,033,371 - -0.5 3,033,392 + +0.6 3,033,392 + +0.3 3,033,393 - -1.0 3,033,405 + -0.0 3,033,405 + -0.1 3,033,406 - +0.3 3,033,406 - -0.7 3,033,460 + -0.2 3,033,460 + +1.5 3,033,537 + DDA3937_RS13290 0.19 +0.8 3,033,537 + DDA3937_RS13290 0.19 +0.6 3,033,541 - DDA3937_RS13290 0.20 -0.2 3,033,666 + DDA3937_RS13290 0.36 -0.1 3,033,667 - DDA3937_RS13290 0.36 -1.2 3,033,667 - DDA3937_RS13290 0.36 +0.8 3,033,667 - DDA3937_RS13290 0.36 +0.5 3,033,667 - DDA3937_RS13290 0.36 +0.2 3,033,668 + DDA3937_RS13290 0.36 +0.6 3,033,668 + DDA3937_RS13290 0.36 +0.3 3,033,668 + DDA3937_RS13290 0.36 +0.2 3,033,669 - DDA3937_RS13290 0.36 +0.6 3,033,669 - DDA3937_RS13290 0.36 +0.3 3,033,669 - DDA3937_RS13290 0.36 +0.8 3,033,688 + DDA3937_RS13290 0.38 -0.1 3,033,689 - DDA3937_RS13290 0.39 -2.0 3,033,716 + DDA3937_RS13290 0.42 -0.3 3,033,716 + DDA3937_RS13290 0.42 +1.9 3,033,716 + DDA3937_RS13290 0.42 -0.4 3,033,716 + DDA3937_RS13290 0.42 -0.2 3,033,716 + DDA3937_RS13290 0.42 -0.7 3,033,717 - DDA3937_RS13290 0.42 +0.5 3,033,717 - DDA3937_RS13290 0.42 -0.8 3,033,758 + DDA3937_RS13290 0.47 +0.1 3,033,758 + DDA3937_RS13290 0.47 -0.5 3,033,758 + DDA3937_RS13290 0.47 -0.8 3,033,758 + DDA3937_RS13290 0.47 -1.0 3,033,758 + DDA3937_RS13290 0.47 -0.0 3,033,758 + DDA3937_RS13290 0.47 +0.8 3,033,773 + +0.3 3,033,774 - DDA3937_RS13290 0.49 +0.1 3,033,855 + DDA3937_RS13290 0.60 -1.2 3,033,855 + DDA3937_RS13290 0.60 -1.3 3,033,855 + DDA3937_RS13290 0.60 -0.5 3,033,855 + DDA3937_RS13290 0.60 -0.4 3,033,856 - DDA3937_RS13290 0.60 +1.3 3,033,856 - DDA3937_RS13290 0.60 -0.8 3,033,856 - DDA3937_RS13290 0.60 +0.5 3,033,871 - DDA3937_RS13290 0.62 -0.6 3,033,947 - DDA3937_RS13290 0.71 -0.2 3,033,947 - DDA3937_RS13290 0.71 +0.4 3,033,947 - -0.2 3,033,955 - DDA3937_RS13290 0.72 -0.3 3,033,961 + DDA3937_RS13290 0.73 +0.4 3,033,962 - DDA3937_RS13290 0.73 -1.2 3,033,974 + DDA3937_RS13290 0.75 +1.8 3,033,974 + DDA3937_RS13290 0.75 +0.1 3,033,974 + DDA3937_RS13290 0.75 +0.6 3,033,974 + DDA3937_RS13290 0.75 +0.0 3,033,975 - DDA3937_RS13290 0.75 +0.3 3,033,975 - DDA3937_RS13290 0.75 +0.0 3,034,174 - +0.2 3,034,184 + +1.0 3,034,185 - +1.0 3,034,185 - +1.0 3,034,185 - -1.1 3,034,185 - +0.4 3,034,185 - +0.8 3,034,206 - -0.1 3,034,257 + +0.4 3,034,258 - -1.2 3,034,264 + +0.3 3,034,380 - -0.1 3,034,491 + -0.6 3,034,491 + +0.8 3,034,492 - +0.3 3,034,519 - +0.0 3,034,519 - +0.8 3,034,519 - -0.1 3,034,522 + -0.3 3,034,522 + -0.7 3,034,522 + +0.1 3,034,523 - -1.2 3,034,523 - +1.2 3,034,596 + +0.8 3,034,596 + -0.6 3,034,610 + +0.6 3,034,611 - -0.5 3,034,611 - -0.4 3,034,612 + -0.1 3,034,634 + -0.9 3,034,651 - -0.2 3,034,651 - -0.3 3,034,655 + +0.8 3,034,655 + +0.2 3,034,656 - +0.8 3,034,662 - +0.5 3,034,706 + -1.2 3,034,707 - -0.2 3,034,730 + -0.8 3,034,731 - +1.2 3,034,731 - -0.4 3,034,761 - DDA3937_RS13295 0.11 -1.1 3,034,764 + DDA3937_RS13295 0.12 -0.6 3,034,764 + DDA3937_RS13295 0.12 -1.0 3,034,764 + DDA3937_RS13295 0.12 +0.8 3,034,764 + DDA3937_RS13295 0.12 -0.2 3,034,765 - DDA3937_RS13295 0.12 +1.0 3,034,765 - DDA3937_RS13295 0.12 -0.0 3,034,765 - DDA3937_RS13295 0.12 +0.8 3,034,765 - DDA3937_RS13295 0.12 -1.2 3,034,774 + DDA3937_RS13295 0.13 +2.4 3,034,774 + DDA3937_RS13295 0.13 +0.4 3,034,774 + DDA3937_RS13295 0.13 -2.0 3,034,775 - DDA3937_RS13295 0.14 +0.2 3,034,775 - DDA3937_RS13295 0.14 +1.3 3,034,777 - DDA3937_RS13295 0.14 +0.6 3,034,777 - DDA3937_RS13295 0.14 -1.8 3,034,777 - DDA3937_RS13295 0.14 -0.7 3,034,787 + DDA3937_RS13295 0.16 -0.7 3,034,797 + DDA3937_RS13295 0.18 -0.1 3,034,798 - DDA3937_RS13295 0.18 +0.0 3,034,798 - DDA3937_RS13295 0.18 +0.4 3,034,798 - DDA3937_RS13295 0.18 -0.4 3,034,859 + DDA3937_RS13295 0.30 +0.2 3,034,889 + DDA3937_RS13295 0.36 +0.4 3,034,889 + DDA3937_RS13295 0.36 -0.4 3,034,890 - DDA3937_RS13295 0.36 -0.5 3,034,890 - DDA3937_RS13295 0.36 +0.5 3,034,906 - DDA3937_RS13295 0.39 +0.4 3,034,935 - DDA3937_RS13295 0.45 +0.8 3,034,961 + DDA3937_RS13295 0.50 +0.3 3,034,962 - DDA3937_RS13295 0.50 +0.2 3,034,962 - DDA3937_RS13295 0.50 -0.3 3,035,006 - DDA3937_RS13295 0.59 -1.6 3,035,040 + DDA3937_RS13295 0.65 -1.1 3,035,040 + DDA3937_RS13295 0.65 -0.2 3,035,040 + DDA3937_RS13295 0.65 -1.0 3,035,041 - DDA3937_RS13295 0.65 +0.0 3,035,082 + DDA3937_RS13295 0.73 -0.8 3,035,105 - DDA3937_RS13295 0.78 +0.8
Or see this region's nucleotide sequence