Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS06980 and DDA3937_RS22035 are separated by 343 nucleotides DDA3937_RS22035 and DDA3937_RS06985 are separated by 57 nucleotides DDA3937_RS06985 and DDA3937_RS06990 are separated by 25 nucleotides
DDA3937_RS06980: DDA3937_RS06980 - RHS repeat protein, at 1,562,524 to 1,567,131
_RS06980
DDA3937_RS22035: DDA3937_RS22035 - immunity protein RhsIC, at 1,567,475 to 1,567,897
_RS22035
DDA3937_RS06985: DDA3937_RS06985 - type I addiction module toxin, SymE family, at 1,567,955 to 1,568,146
_RS06985
DDA3937_RS06990: DDA3937_RS06990 - RHS domain-containing protein, at 1,568,172 to 1,569,566
_RS06990
Position (kb)
1567
1568
1569 Strain fitness (log2 ratio)
-2
-1
0
1 at 1567.039 kb on + strand at 1567.040 kb on - strand at 1567.090 kb on + strand at 1567.090 kb on + strand at 1567.090 kb on + strand at 1567.098 kb on + strand at 1567.226 kb on + strand at 1567.294 kb on + strand at 1567.295 kb on - strand at 1567.417 kb on - strand at 1567.442 kb on + strand at 1567.654 kb on - strand, within DDA3937_RS22035 at 1567.669 kb on + strand, within DDA3937_RS22035 at 1567.694 kb on - strand, within DDA3937_RS22035 at 1567.724 kb on + strand, within DDA3937_RS22035 at 1567.829 kb on - strand, within DDA3937_RS22035 at 1567.848 kb on + strand, within DDA3937_RS22035 at 1567.876 kb on + strand at 1567.891 kb on + strand at 1568.034 kb on - strand, within DDA3937_RS06985 at 1568.034 kb on - strand, within DDA3937_RS06985 at 1568.174 kb on - strand at 1568.203 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,567,039 + -0.2 1,567,040 - +0.4 1,567,090 + -0.1 1,567,090 + +0.4 1,567,090 + +0.1 1,567,098 + +0.5 1,567,226 + -1.3 1,567,294 + +1.2 1,567,295 - +0.2 1,567,417 - -0.8 1,567,442 + +0.8 1,567,654 - DDA3937_RS22035 0.42 +0.0 1,567,669 + DDA3937_RS22035 0.46 -1.3 1,567,694 - DDA3937_RS22035 0.52 -2.0 1,567,724 + DDA3937_RS22035 0.59 -2.3 1,567,829 - DDA3937_RS22035 0.84 -0.5 1,567,848 + DDA3937_RS22035 0.88 -1.8 1,567,876 + -1.5 1,567,891 + +0.8 1,568,034 - DDA3937_RS06985 0.41 -0.6 1,568,034 - DDA3937_RS06985 0.41 +0.0 1,568,174 - +0.2 1,568,203 - +1.6
Or see this region's nucleotide sequence