Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS06470 and DDA3937_RS06475 overlap by 1 nucleotides DDA3937_RS06475 and DDA3937_RS06480 are separated by 688 nucleotides
DDA3937_RS06470: DDA3937_RS06470 - ADP-forming succinate--CoA ligase subunit beta, at 1,446,345 to 1,447,511
_RS06470
DDA3937_RS06475: DDA3937_RS06475 - succinate--CoA ligase subunit alpha, at 1,447,511 to 1,448,383
_RS06475
DDA3937_RS06480: DDA3937_RS06480 - cytochrome ubiquinol oxidase subunit I, at 1,449,072 to 1,450,637
_RS06480
Position (kb)
1447
1448
1449 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1446.594 kb on + strand, within DDA3937_RS06470 at 1447.132 kb on + strand, within DDA3937_RS06470 at 1447.509 kb on + strand at 1447.509 kb on + strand at 1447.607 kb on - strand, within DDA3937_RS06475 at 1447.725 kb on - strand, within DDA3937_RS06475 at 1447.754 kb on - strand, within DDA3937_RS06475 at 1447.892 kb on - strand, within DDA3937_RS06475 at 1448.171 kb on + strand, within DDA3937_RS06475 at 1448.172 kb on - strand, within DDA3937_RS06475 at 1448.202 kb on + strand, within DDA3937_RS06475 at 1448.454 kb on - strand at 1448.475 kb on + strand at 1448.478 kb on - strand at 1448.515 kb on + strand at 1448.515 kb on + strand at 1448.527 kb on - strand at 1448.527 kb on - strand at 1448.555 kb on + strand at 1448.555 kb on + strand at 1448.598 kb on + strand at 1448.598 kb on + strand at 1448.629 kb on + strand at 1448.629 kb on + strand at 1448.629 kb on + strand at 1448.629 kb on + strand at 1448.630 kb on - strand at 1448.634 kb on + strand at 1448.647 kb on - strand at 1448.656 kb on + strand at 1448.656 kb on + strand at 1448.786 kb on + strand at 1448.836 kb on - strand at 1448.863 kb on + strand at 1448.877 kb on + strand at 1448.885 kb on + strand at 1448.890 kb on + strand at 1448.992 kb on + strand at 1449.012 kb on - strand at 1449.015 kb on + strand at 1449.101 kb on - strand at 1449.221 kb on + strand at 1449.222 kb on - strand at 1449.318 kb on + strand, within DDA3937_RS06480 at 1449.318 kb on + strand, within DDA3937_RS06480 at 1449.321 kb on + strand, within DDA3937_RS06480
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,446,594 + DDA3937_RS06470 0.21 +1.9 1,447,132 + DDA3937_RS06470 0.67 -0.6 1,447,509 + -0.1 1,447,509 + +0.2 1,447,607 - DDA3937_RS06475 0.11 +0.6 1,447,725 - DDA3937_RS06475 0.25 -2.4 1,447,754 - DDA3937_RS06475 0.28 +0.1 1,447,892 - DDA3937_RS06475 0.44 -0.7 1,448,171 + DDA3937_RS06475 0.76 +0.9 1,448,172 - DDA3937_RS06475 0.76 -0.7 1,448,202 + DDA3937_RS06475 0.79 -0.8 1,448,454 - -0.4 1,448,475 + +0.1 1,448,478 - -0.3 1,448,515 + -0.7 1,448,515 + -0.5 1,448,527 - -0.7 1,448,527 - -0.3 1,448,555 + -1.4 1,448,555 + -1.9 1,448,598 + +1.9 1,448,598 + +0.9 1,448,629 + +0.9 1,448,629 + +0.3 1,448,629 + -0.4 1,448,629 + +1.4 1,448,630 - +0.8 1,448,634 + -0.1 1,448,647 - -1.6 1,448,656 + -0.2 1,448,656 + -0.8 1,448,786 + -0.5 1,448,836 - +0.1 1,448,863 + -0.5 1,448,877 + -0.4 1,448,885 + +1.2 1,448,890 + +0.2 1,448,992 + -0.2 1,449,012 - +0.9 1,449,015 + -0.6 1,449,101 - -1.7 1,449,221 + -1.4 1,449,222 - -0.2 1,449,318 + DDA3937_RS06480 0.16 -2.1 1,449,318 + DDA3937_RS06480 0.16 -1.9 1,449,321 + DDA3937_RS06480 0.16 -1.5
Or see this region's nucleotide sequence