Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS06215

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS06205 and DDA3937_RS06210 are separated by 65 nucleotidesDDA3937_RS06210 and DDA3937_RS06215 overlap by 1 nucleotidesDDA3937_RS06215 and DDA3937_RS06220 are separated by 0 nucleotidesDDA3937_RS06220 and DDA3937_RS06225 are separated by 163 nucleotides DDA3937_RS06205: DDA3937_RS06205 - zinc ribbon-containing protein, at 1,392,035 to 1,392,517 _RS06205 DDA3937_RS06210: DDA3937_RS06210 - amino acid ABC transporter ATP-binding protein, at 1,392,583 to 1,393,308 _RS06210 DDA3937_RS06215: DDA3937_RS06215 - glutamate/aspartate ABC transporter permease GltK, at 1,393,308 to 1,393,982 _RS06215 DDA3937_RS06220: DDA3937_RS06220 - amino acid ABC transporter permease, at 1,393,983 to 1,394,723 _RS06220 DDA3937_RS06225: DDA3937_RS06225 - glutamate/aspartate ABC transporter substrate-binding protein, at 1,394,887 to 1,395,810 _RS06225 Position (kb) 1393 1394Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1392.320 kb on - strand, within DDA3937_RS06205at 1392.374 kb on + strand, within DDA3937_RS06205at 1392.375 kb on - strand, within DDA3937_RS06205at 1392.375 kb on - strand, within DDA3937_RS06205at 1392.572 kb on + strandat 1392.572 kb on + strandat 1392.585 kb on - strandat 1392.585 kb on - strandat 1392.853 kb on - strand, within DDA3937_RS06210at 1392.994 kb on + strand, within DDA3937_RS06210at 1393.085 kb on - strand, within DDA3937_RS06210at 1393.181 kb on - strand, within DDA3937_RS06210at 1393.278 kb on - strandat 1393.284 kb on + strandat 1393.330 kb on + strandat 1393.330 kb on + strandat 1393.331 kb on - strandat 1393.331 kb on - strandat 1393.331 kb on - strandat 1393.362 kb on - strandat 1393.465 kb on + strand, within DDA3937_RS06215at 1393.465 kb on + strand, within DDA3937_RS06215at 1393.465 kb on + strand, within DDA3937_RS06215at 1393.465 kb on + strand, within DDA3937_RS06215at 1393.465 kb on + strand, within DDA3937_RS06215at 1393.465 kb on + strand, within DDA3937_RS06215at 1393.466 kb on - strand, within DDA3937_RS06215at 1393.466 kb on - strandat 1393.512 kb on + strand, within DDA3937_RS06215at 1393.651 kb on + strand, within DDA3937_RS06215at 1393.652 kb on - strand, within DDA3937_RS06215at 1393.682 kb on + strand, within DDA3937_RS06215at 1393.683 kb on - strand, within DDA3937_RS06215at 1393.683 kb on - strand, within DDA3937_RS06215at 1393.690 kb on - strand, within DDA3937_RS06215at 1393.735 kb on - strand, within DDA3937_RS06215at 1393.737 kb on + strand, within DDA3937_RS06215at 1393.756 kb on + strand, within DDA3937_RS06215at 1393.807 kb on + strand, within DDA3937_RS06215at 1393.807 kb on + strand, within DDA3937_RS06215at 1393.807 kb on + strand, within DDA3937_RS06215at 1393.940 kb on - strandat 1393.940 kb on - strandat 1393.984 kb on + strandat 1393.985 kb on - strandat 1394.018 kb on + strandat 1394.019 kb on - strandat 1394.019 kb on - strandat 1394.019 kb on - strandat 1394.019 kb on - strandat 1394.019 kb on - strandat 1394.067 kb on - strand, within DDA3937_RS06220at 1394.069 kb on - strand, within DDA3937_RS06220at 1394.069 kb on - strand, within DDA3937_RS06220at 1394.069 kb on - strand, within DDA3937_RS06220at 1394.069 kb on - strand, within DDA3937_RS06220at 1394.099 kb on - strand, within DDA3937_RS06220at 1394.099 kb on - strand, within DDA3937_RS06220at 1394.099 kb on - strand, within DDA3937_RS06220at 1394.247 kb on + strand, within DDA3937_RS06220at 1394.247 kb on + strand, within DDA3937_RS06220at 1394.247 kb on + strand, within DDA3937_RS06220at 1394.247 kb on + strand, within DDA3937_RS06220at 1394.248 kb on - strand, within DDA3937_RS06220at 1394.248 kb on - strand, within DDA3937_RS06220at 1394.248 kb on - strand, within DDA3937_RS06220at 1394.248 kb on - strand, within DDA3937_RS06220at 1394.248 kb on - strand, within DDA3937_RS06220at 1394.248 kb on - strand, within DDA3937_RS06220at 1394.251 kb on + strand, within DDA3937_RS06220at 1394.252 kb on - strand, within DDA3937_RS06220at 1394.252 kb on - strand, within DDA3937_RS06220at 1394.257 kb on + strand, within DDA3937_RS06220at 1394.258 kb on - strand, within DDA3937_RS06220at 1394.258 kb on - strand, within DDA3937_RS06220at 1394.521 kb on + strand, within DDA3937_RS06220at 1394.521 kb on + strand, within DDA3937_RS06220at 1394.521 kb on + strand, within DDA3937_RS06220at 1394.521 kb on + strand, within DDA3937_RS06220at 1394.522 kb on - strand, within DDA3937_RS06220at 1394.522 kb on - strand, within DDA3937_RS06220at 1394.522 kb on - strand, within DDA3937_RS06220at 1394.522 kb on - strand, within DDA3937_RS06220at 1394.648 kb on + strand, within DDA3937_RS06220at 1394.648 kb on + strand, within DDA3937_RS06220at 1394.648 kb on + strand, within DDA3937_RS06220at 1394.649 kb on - strand, within DDA3937_RS06220at 1394.658 kb on + strandat 1394.659 kb on - strandat 1394.662 kb on + strandat 1394.662 kb on + strandat 1394.662 kb on + strandat 1394.662 kb on + strandat 1394.662 kb on + strandat 1394.858 kb on - strandat 1394.858 kb on - strandat 1394.868 kb on - strandat 1394.868 kb on - strandat 1394.877 kb on - strandat 1394.880 kb on - strandat 1394.880 kb on - strandat 1394.889 kb on - strandat 1394.898 kb on + strandat 1394.943 kb on + strandat 1394.945 kb on + strandat 1394.945 kb on + strandat 1394.945 kb on + strandat 1394.945 kb on + strandat 1394.945 kb on + strandat 1394.945 kb on + strandat 1394.945 kb on + strandat 1394.946 kb on - strandat 1394.946 kb on - strandat 1394.946 kb on - strandat 1394.946 kb on - strandat 1394.956 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,392,320 - DDA3937_RS06205 0.59 +0.7
1,392,374 + DDA3937_RS06205 0.70 +0.0
1,392,375 - DDA3937_RS06205 0.70 -0.4
1,392,375 - DDA3937_RS06205 0.70 -1.4
1,392,572 + -0.2
1,392,572 + +0.5
1,392,585 - +0.8
1,392,585 - +1.1
1,392,853 - DDA3937_RS06210 0.37 +0.1
1,392,994 + DDA3937_RS06210 0.57 -1.4
1,393,085 - DDA3937_RS06210 0.69 -0.1
1,393,181 - DDA3937_RS06210 0.82 +0.4
1,393,278 - -1.1
1,393,284 + +0.9
1,393,330 + -0.6
1,393,330 + -0.5
1,393,331 - -0.4
1,393,331 - -0.8
1,393,331 - -0.5
1,393,362 - -1.6
1,393,465 + DDA3937_RS06215 0.23 -0.6
1,393,465 + DDA3937_RS06215 0.23 +1.5
1,393,465 + DDA3937_RS06215 0.23 -0.8
1,393,465 + DDA3937_RS06215 0.23 -0.3
1,393,465 + DDA3937_RS06215 0.23 -0.9
1,393,465 + DDA3937_RS06215 0.23 -1.5
1,393,466 - DDA3937_RS06215 0.23 +1.2
1,393,466 - -1.4
1,393,512 + DDA3937_RS06215 0.30 -1.6
1,393,651 + DDA3937_RS06215 0.51 +0.9
1,393,652 - DDA3937_RS06215 0.51 -0.6
1,393,682 + DDA3937_RS06215 0.55 -0.2
1,393,683 - DDA3937_RS06215 0.56 -0.9
1,393,683 - DDA3937_RS06215 0.56 -1.1
1,393,690 - DDA3937_RS06215 0.57 +0.2
1,393,735 - DDA3937_RS06215 0.63 -0.6
1,393,737 + DDA3937_RS06215 0.64 +0.5
1,393,756 + DDA3937_RS06215 0.66 -0.2
1,393,807 + DDA3937_RS06215 0.74 -2.8
1,393,807 + DDA3937_RS06215 0.74 -0.4
1,393,807 + DDA3937_RS06215 0.74 +0.7
1,393,940 - +0.7
1,393,940 - -2.2
1,393,984 + +0.9
1,393,985 - -0.6
1,394,018 + +0.9
1,394,019 - -0.5
1,394,019 - -1.4
1,394,019 - +0.1
1,394,019 - -1.1
1,394,019 - +0.9
1,394,067 - DDA3937_RS06220 0.11 -0.6
1,394,069 - DDA3937_RS06220 0.12 -0.5
1,394,069 - DDA3937_RS06220 0.12 -0.5
1,394,069 - DDA3937_RS06220 0.12 +0.4
1,394,069 - DDA3937_RS06220 0.12 -1.1
1,394,099 - DDA3937_RS06220 0.16 +0.4
1,394,099 - DDA3937_RS06220 0.16 -0.1
1,394,099 - DDA3937_RS06220 0.16 -0.2
1,394,247 + DDA3937_RS06220 0.36 -0.4
1,394,247 + DDA3937_RS06220 0.36 -0.9
1,394,247 + DDA3937_RS06220 0.36 -0.1
1,394,247 + DDA3937_RS06220 0.36 -0.3
1,394,248 - DDA3937_RS06220 0.36 +1.3
1,394,248 - DDA3937_RS06220 0.36 -1.4
1,394,248 - DDA3937_RS06220 0.36 -1.4
1,394,248 - DDA3937_RS06220 0.36 +0.7
1,394,248 - DDA3937_RS06220 0.36 -0.7
1,394,248 - DDA3937_RS06220 0.36 -1.9
1,394,251 + DDA3937_RS06220 0.36 +0.7
1,394,252 - DDA3937_RS06220 0.36 -0.9
1,394,252 - DDA3937_RS06220 0.36 -1.5
1,394,257 + DDA3937_RS06220 0.37 -1.2
1,394,258 - DDA3937_RS06220 0.37 -1.1
1,394,258 - DDA3937_RS06220 0.37 -0.9
1,394,521 + DDA3937_RS06220 0.73 +0.2
1,394,521 + DDA3937_RS06220 0.73 +0.4
1,394,521 + DDA3937_RS06220 0.73 +0.3
1,394,521 + DDA3937_RS06220 0.73 -0.8
1,394,522 - DDA3937_RS06220 0.73 -0.4
1,394,522 - DDA3937_RS06220 0.73 +0.6
1,394,522 - DDA3937_RS06220 0.73 +1.4
1,394,522 - DDA3937_RS06220 0.73 -0.5
1,394,648 + DDA3937_RS06220 0.90 -0.5
1,394,648 + DDA3937_RS06220 0.90 +0.4
1,394,648 + DDA3937_RS06220 0.90 -0.1
1,394,649 - DDA3937_RS06220 0.90 -1.6
1,394,658 + +0.7
1,394,659 - +0.4
1,394,662 + -1.9
1,394,662 + +0.7
1,394,662 + -1.4
1,394,662 + +0.0
1,394,662 + -1.2
1,394,858 - -0.3
1,394,858 - +2.3
1,394,868 - +0.9
1,394,868 - -0.1
1,394,877 - +0.2
1,394,880 - +0.2
1,394,880 - -0.3
1,394,889 - +1.6
1,394,898 + -0.2
1,394,943 + +0.6
1,394,945 + +0.7
1,394,945 + -1.4
1,394,945 + -0.6
1,394,945 + +0.2
1,394,945 + +0.2
1,394,945 + +0.1
1,394,945 + -1.6
1,394,946 - +0.3
1,394,946 - -0.3
1,394,946 - +0.5
1,394,946 - -1.2
1,394,956 - -0.1

Or see this region's nucleotide sequence