Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS05590 and DDA3937_RS05595 are separated by 289 nucleotides DDA3937_RS05595 and DDA3937_RS05600 are separated by 16 nucleotides DDA3937_RS05600 and DDA3937_RS05605 overlap by 1 nucleotides DDA3937_RS05605 and DDA3937_RS05610 overlap by 11 nucleotides
DDA3937_RS05590: DDA3937_RS05590 - AraC family transcriptional regulator, at 1,248,332 to 1,249,243
_RS05590
DDA3937_RS05595: DDA3937_RS05595 - protoheme IX farnesyltransferase, at 1,249,533 to 1,250,423
_RS05595
DDA3937_RS05600: DDA3937_RS05600 - cytochrome o ubiquinol oxidase subunit IV, at 1,250,440 to 1,250,772
_RS05600
DDA3937_RS05605: DDA3937_RS05605 - cytochrome o ubiquinol oxidase subunit III, at 1,250,772 to 1,251,386
_RS05605
DDA3937_RS05610: DDA3937_RS05610 - cytochrome o ubiquinol oxidase subunit I, at 1,251,376 to 1,253,367
_RS05610
Position (kb) 1249
1250
1251 Strain fitness (log2 ratio) -2
-1
0
1 at 1248.542 kb on - strand, within DDA3937_RS05590 at 1248.542 kb on - strand, within DDA3937_RS05590 at 1248.672 kb on - strand, within DDA3937_RS05590 at 1248.829 kb on + strand, within DDA3937_RS05590 at 1248.829 kb on + strand, within DDA3937_RS05590 at 1248.830 kb on - strand, within DDA3937_RS05590 at 1248.832 kb on + strand, within DDA3937_RS05590 at 1248.833 kb on - strand, within DDA3937_RS05590 at 1248.833 kb on - strand, within DDA3937_RS05590 at 1248.913 kb on + strand, within DDA3937_RS05590 at 1248.914 kb on - strand, within DDA3937_RS05590 at 1248.914 kb on - strand, within DDA3937_RS05590 at 1248.917 kb on + strand, within DDA3937_RS05590 at 1248.917 kb on + strand, within DDA3937_RS05590 at 1248.917 kb on + strand, within DDA3937_RS05590 at 1248.918 kb on - strand, within DDA3937_RS05590 at 1248.918 kb on - strand, within DDA3937_RS05590 at 1248.940 kb on + strand, within DDA3937_RS05590 at 1248.940 kb on + strand, within DDA3937_RS05590 at 1248.944 kb on + strand, within DDA3937_RS05590 at 1248.944 kb on + strand, within DDA3937_RS05590 at 1248.945 kb on - strand, within DDA3937_RS05590 at 1248.945 kb on - strand, within DDA3937_RS05590 at 1248.945 kb on - strand, within DDA3937_RS05590 at 1248.945 kb on - strand, within DDA3937_RS05590 at 1248.945 kb on - strand, within DDA3937_RS05590 at 1249.197 kb on + strand at 1249.198 kb on - strand at 1249.198 kb on - strand at 1249.198 kb on - strand at 1249.198 kb on - strand at 1249.214 kb on + strand at 1249.214 kb on + strand at 1249.214 kb on + strand at 1249.221 kb on - strand at 1249.221 kb on - strand at 1249.268 kb on + strand at 1249.334 kb on + strand at 1249.404 kb on - strand at 1249.445 kb on + strand at 1249.445 kb on + strand at 1249.445 kb on + strand at 1249.445 kb on + strand at 1249.514 kb on - strand at 1249.527 kb on + strand at 1249.532 kb on - strand at 1249.532 kb on - strand at 1249.532 kb on - strand at 1249.543 kb on + strand at 1249.730 kb on - strand, within DDA3937_RS05595 at 1249.730 kb on - strand, within DDA3937_RS05595 at 1249.790 kb on + strand, within DDA3937_RS05595 at 1249.800 kb on - strand, within DDA3937_RS05595 at 1250.320 kb on + strand, within DDA3937_RS05595 at 1250.418 kb on - strand at 1250.418 kb on - strand at 1251.108 kb on - strand, within DDA3937_RS05605
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,248,542 - DDA3937_RS05590 0.23 +0.5 1,248,542 - DDA3937_RS05590 0.23 -0.1 1,248,672 - DDA3937_RS05590 0.37 -0.1 1,248,829 + DDA3937_RS05590 0.54 +1.1 1,248,829 + DDA3937_RS05590 0.54 +0.2 1,248,830 - DDA3937_RS05590 0.55 -0.4 1,248,832 + DDA3937_RS05590 0.55 +1.7 1,248,833 - DDA3937_RS05590 0.55 +1.0 1,248,833 - DDA3937_RS05590 0.55 +0.1 1,248,913 + DDA3937_RS05590 0.64 +0.7 1,248,914 - DDA3937_RS05590 0.64 +0.7 1,248,914 - DDA3937_RS05590 0.64 -0.2 1,248,917 + DDA3937_RS05590 0.64 -0.3 1,248,917 + DDA3937_RS05590 0.64 -0.0 1,248,917 + DDA3937_RS05590 0.64 +0.2 1,248,918 - DDA3937_RS05590 0.64 +1.6 1,248,918 - DDA3937_RS05590 0.64 -0.5 1,248,940 + DDA3937_RS05590 0.67 +0.1 1,248,940 + DDA3937_RS05590 0.67 +0.3 1,248,944 + DDA3937_RS05590 0.67 -0.2 1,248,944 + DDA3937_RS05590 0.67 +0.3 1,248,945 - DDA3937_RS05590 0.67 -0.7 1,248,945 - DDA3937_RS05590 0.67 +1.7 1,248,945 - DDA3937_RS05590 0.67 -0.7 1,248,945 - DDA3937_RS05590 0.67 -0.8 1,248,945 - DDA3937_RS05590 0.67 +0.4 1,249,197 + -0.0 1,249,198 - -1.6 1,249,198 - +0.4 1,249,198 - -0.4 1,249,198 - -0.0 1,249,214 + +0.9 1,249,214 + +0.1 1,249,214 + -0.0 1,249,221 - -0.3 1,249,221 - -0.6 1,249,268 + -1.6 1,249,334 + -0.4 1,249,404 - -0.9 1,249,445 + -0.6 1,249,445 + +0.6 1,249,445 + -1.8 1,249,445 + +1.0 1,249,514 - -0.7 1,249,527 + -0.1 1,249,532 - -1.0 1,249,532 - +1.0 1,249,532 - -0.6 1,249,543 + -0.2 1,249,730 - DDA3937_RS05595 0.22 -0.0 1,249,730 - DDA3937_RS05595 0.22 -0.8 1,249,790 + DDA3937_RS05595 0.29 -0.2 1,249,800 - DDA3937_RS05595 0.30 +0.6 1,250,320 + DDA3937_RS05595 0.88 -1.6 1,250,418 - -1.7 1,250,418 - -0.0 1,251,108 - DDA3937_RS05605 0.55 -0.6
Or see this region's nucleotide sequence