Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS04875 and DDA3937_RS04880 are separated by 425 nucleotides DDA3937_RS04880 and DDA3937_RS04885 are separated by 297 nucleotides
DDA3937_RS04875: DDA3937_RS04875 - IS110 family transposase, at 1,091,756 to 1,092,745
_RS04875
DDA3937_RS04880: DDA3937_RS04880 - IS110-like element ISEch4 family transposase, at 1,093,171 to 1,094,175
_RS04880
DDA3937_RS04885: DDA3937_RS04885 - L-asparagine permease, at 1,094,473 to 1,095,930
_RS04885
Position (kb) 1093
1094
1095 Strain fitness (log2 ratio) -1
0
1 at 1092.950 kb on + strand at 1092.950 kb on + strand at 1092.950 kb on + strand at 1092.950 kb on + strand at 1093.050 kb on + strand at 1093.103 kb on + strand at 1093.103 kb on + strand at 1093.104 kb on - strand at 1093.104 kb on - strand at 1093.104 kb on - strand at 1093.104 kb on - strand at 1093.104 kb on - strand at 1093.104 kb on - strand at 1093.104 kb on - strand at 1093.256 kb on + strand at 1094.368 kb on + strand at 1094.413 kb on + strand at 1094.413 kb on + strand at 1094.475 kb on - strand at 1094.475 kb on - strand at 1094.586 kb on + strand at 1094.682 kb on + strand, within DDA3937_RS04885 at 1094.683 kb on - strand, within DDA3937_RS04885 at 1094.751 kb on + strand, within DDA3937_RS04885 at 1094.751 kb on + strand, within DDA3937_RS04885 at 1094.752 kb on - strand, within DDA3937_RS04885 at 1094.752 kb on - strand, within DDA3937_RS04885 at 1094.769 kb on + strand, within DDA3937_RS04885 at 1094.770 kb on - strand, within DDA3937_RS04885 at 1094.770 kb on - strand, within DDA3937_RS04885 at 1094.772 kb on + strand, within DDA3937_RS04885 at 1094.825 kb on + strand, within DDA3937_RS04885 at 1094.847 kb on + strand, within DDA3937_RS04885 at 1094.847 kb on + strand, within DDA3937_RS04885 at 1094.847 kb on + strand, within DDA3937_RS04885 at 1094.848 kb on - strand at 1094.848 kb on - strand at 1094.848 kb on - strand, within DDA3937_RS04885 at 1094.848 kb on - strand, within DDA3937_RS04885 at 1094.966 kb on + strand, within DDA3937_RS04885 at 1094.966 kb on + strand, within DDA3937_RS04885 at 1094.966 kb on + strand, within DDA3937_RS04885 at 1095.012 kb on + strand, within DDA3937_RS04885 at 1095.032 kb on + strand, within DDA3937_RS04885 at 1095.032 kb on + strand, within DDA3937_RS04885 at 1095.032 kb on + strand, within DDA3937_RS04885 at 1095.033 kb on - strand, within DDA3937_RS04885 at 1095.033 kb on - strand at 1095.033 kb on - strand, within DDA3937_RS04885 at 1095.033 kb on - strand, within DDA3937_RS04885 at 1095.033 kb on - strand, within DDA3937_RS04885 at 1095.135 kb on - strand, within DDA3937_RS04885
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,092,950 + +0.5 1,092,950 + -0.7 1,092,950 + -1.6 1,092,950 + -1.1 1,093,050 + +1.4 1,093,103 + -0.5 1,093,103 + +0.2 1,093,104 - +0.5 1,093,104 - -0.8 1,093,104 - -0.3 1,093,104 - -0.3 1,093,104 - -0.2 1,093,104 - -0.2 1,093,104 - +0.2 1,093,256 + +0.4 1,094,368 + +0.3 1,094,413 + +0.3 1,094,413 + +1.0 1,094,475 - -0.2 1,094,475 - -1.0 1,094,586 + +0.3 1,094,682 + DDA3937_RS04885 0.14 -0.4 1,094,683 - DDA3937_RS04885 0.14 -0.6 1,094,751 + DDA3937_RS04885 0.19 -0.6 1,094,751 + DDA3937_RS04885 0.19 +0.2 1,094,752 - DDA3937_RS04885 0.19 +0.8 1,094,752 - DDA3937_RS04885 0.19 +0.2 1,094,769 + DDA3937_RS04885 0.20 -0.3 1,094,770 - DDA3937_RS04885 0.20 +0.3 1,094,770 - DDA3937_RS04885 0.20 -0.4 1,094,772 + DDA3937_RS04885 0.21 -0.1 1,094,825 + DDA3937_RS04885 0.24 -0.1 1,094,847 + DDA3937_RS04885 0.26 +0.0 1,094,847 + DDA3937_RS04885 0.26 -1.6 1,094,847 + DDA3937_RS04885 0.26 -0.3 1,094,848 - +1.4 1,094,848 - -1.3 1,094,848 - DDA3937_RS04885 0.26 -0.9 1,094,848 - DDA3937_RS04885 0.26 +0.3 1,094,966 + DDA3937_RS04885 0.34 -0.1 1,094,966 + DDA3937_RS04885 0.34 -0.3 1,094,966 + DDA3937_RS04885 0.34 +0.2 1,095,012 + DDA3937_RS04885 0.37 +1.0 1,095,032 + DDA3937_RS04885 0.38 -0.2 1,095,032 + DDA3937_RS04885 0.38 +0.3 1,095,032 + DDA3937_RS04885 0.38 -0.2 1,095,033 - DDA3937_RS04885 0.38 +0.3 1,095,033 - -0.4 1,095,033 - DDA3937_RS04885 0.38 -0.6 1,095,033 - DDA3937_RS04885 0.38 +0.4 1,095,033 - DDA3937_RS04885 0.38 +0.9 1,095,135 - DDA3937_RS04885 0.45 +0.2
Or see this region's nucleotide sequence