Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS04865

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,087,604	+		DDA3937_RS04860	0.42	+0.0
1,087,604	+		DDA3937_RS04860	0.42	+1.0
1,087,605	-		DDA3937_RS04860	0.42	+0.5
1,087,605	-		DDA3937_RS04860	0.42	+0.6
1,087,636	+		DDA3937_RS04860	0.45	+0.2
1,087,636	+		DDA3937_RS04860	0.45	+0.0
1,087,637	-		DDA3937_RS04860	0.45	+0.6
1,087,637	-		DDA3937_RS04860	0.45	-0.6
1,087,644	-		DDA3937_RS04860	0.46	-0.1
1,087,675	-		DDA3937_RS04860	0.48	-1.3
1,087,675	-		DDA3937_RS04860	0.48	-0.1
1,087,694	+		DDA3937_RS04860	0.50	-0.0
1,087,713	-		DDA3937_RS04860	0.51	-0.2
1,087,838	+		DDA3937_RS04860	0.61	-0.1
1,087,838	+		DDA3937_RS04860	0.61	-0.3
1,087,839	-				+0.0
1,088,041	+		DDA3937_RS04860	0.77	-1.0
1,088,041	+		DDA3937_RS04860	0.77	-1.6
1,088,042	-		DDA3937_RS04860	0.77	+0.9
1,088,042	-		DDA3937_RS04860	0.77	-0.1
1,088,110	+		DDA3937_RS04860	0.83	-0.6
1,088,110	+		DDA3937_RS04860	0.83	+0.4
1,088,110	+		DDA3937_RS04860	0.83	-0.7
1,088,110	+		DDA3937_RS04860	0.83	+0.3
1,088,110	+		DDA3937_RS04860	0.83	+0.6
1,088,111	-		DDA3937_RS04860	0.83	+0.0
1,088,111	-		DDA3937_RS04860	0.83	+0.9
1,088,111	-		DDA3937_RS04860	0.83	+0.8
1,088,111	-		DDA3937_RS04860	0.83	+1.6
1,088,111	-		DDA3937_RS04860	0.83	+0.0
1,088,209	+				+0.2
1,088,209	+				-0.3
1,088,209	+				+0.5
1,088,209	+				-1.0
1,088,210	-				-0.9
1,088,210	-				+0.3
1,088,210	-				+0.0
1,088,210	-				+1.3
1,088,210	-				-0.8
1,088,210	-				-1.2
1,088,210	-				-0.6
1,088,210	-				+0.9
1,088,234	-				+1.0
1,088,239	+				-0.1
1,088,250	+				-0.1
1,088,250	+				-0.6
1,088,251	-				-0.7
1,088,251	-				-0.3
1,088,251	-				+1.3
1,088,252	+				+2.0
1,088,253	-				+0.0
1,088,253	-				+0.7
1,088,253	-				-1.2
1,088,253	-				-0.4
1,088,278	-				+0.5
1,088,372	-				+0.7
1,088,408	-				-0.6
1,088,470	-				+0.4
1,088,588	+				+1.0
1,088,588	+				-0.1
1,088,590	+				+2.2
1,088,622	-				-0.3
1,088,639	+				-0.6
1,088,639	+				+0.2
1,088,654	-				+0.2
1,088,738	+				-0.6
1,088,738	+				-1.3
1,088,738	+				-1.0
1,088,778	+				-0.6
1,088,787	+				-0.2
1,088,787	+				-2.6
1,088,788	-				-1.4
1,088,788	-				-2.1
1,088,801	+				+0.3
1,088,802	-				+0.9
1,088,802	-				+0.7
1,088,802	-				-0.2
1,088,807	-				+0.6
1,088,807	-				+0.0
1,088,807	-				-0.1
1,088,807	-				-0.1
1,088,824	-				+0.0
1,088,827	-				-1.5
1,088,840	+				+1.6
1,088,840	+				+1.0
1,088,864	-				-2.1
1,088,997	+				+0.4
1,088,997	+				-0.1
1,088,997	+				-0.6
1,088,997	+				+0.1
1,088,998	-				-0.1
1,089,090	+				+0.2
1,089,090	+				-0.3
1,089,090	+				-0.4
1,089,090	+				+0.4
1,089,090	+				+0.0
1,089,091	-				+0.7
1,089,091	-				-0.3
1,089,136	+				+0.4
1,089,136	+				-0.2
1,089,136	+				+0.5
1,089,136	+				+0.9
1,089,137	-				-1.7
1,089,159	+				+1.8
1,089,159	+				-0.2
1,089,160	-				+0.0
1,089,160	-				-0.2
1,089,192	+				-1.0
1,089,192	+				+0.7
1,089,230	+				-0.2
1,089,230	+				-1.4
1,089,231	-				-0.2
1,089,279	+				-0.6
1,089,279	+				+0.0
1,089,280	-				+1.0
1,089,345	+				-1.1
1,089,531	-		DDA3937_RS04870	0.14	-1.0
1,089,544	-		DDA3937_RS04870	0.14	+0.2