Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS04415 and DDA3937_RS04420 are separated by 226 nucleotides DDA3937_RS04420 and DDA3937_RS04425 are separated by 83 nucleotides
DDA3937_RS04415: DDA3937_RS04415 - cytosine permease, at 974,417 to 975,712
_RS04415
DDA3937_RS04420: DDA3937_RS04420 - Dyp-type peroxidase, at 975,939 to 976,838
_RS04420
DDA3937_RS04425: DDA3937_RS04425 - cysteine synthase CysM, at 976,922 to 977,803
_RS04425
Position (kb) 975
976
977 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 974.953 kb on + strand, within DDA3937_RS04415 at 974.953 kb on + strand, within DDA3937_RS04415 at 974.953 kb on + strand, within DDA3937_RS04415 at 974.953 kb on + strand, within DDA3937_RS04415 at 974.953 kb on + strand, within DDA3937_RS04415 at 974.982 kb on + strand, within DDA3937_RS04415 at 974.983 kb on - strand, within DDA3937_RS04415 at 974.995 kb on + strand, within DDA3937_RS04415 at 974.996 kb on - strand, within DDA3937_RS04415 at 975.037 kb on + strand, within DDA3937_RS04415 at 975.038 kb on - strand, within DDA3937_RS04415 at 975.111 kb on + strand, within DDA3937_RS04415 at 975.111 kb on + strand, within DDA3937_RS04415 at 975.111 kb on + strand, within DDA3937_RS04415 at 975.111 kb on + strand, within DDA3937_RS04415 at 975.111 kb on + strand, within DDA3937_RS04415 at 975.112 kb on - strand, within DDA3937_RS04415 at 975.112 kb on - strand, within DDA3937_RS04415 at 975.112 kb on - strand, within DDA3937_RS04415 at 975.275 kb on + strand, within DDA3937_RS04415 at 975.313 kb on + strand, within DDA3937_RS04415 at 975.313 kb on + strand, within DDA3937_RS04415 at 975.313 kb on + strand, within DDA3937_RS04415 at 975.313 kb on + strand, within DDA3937_RS04415 at 975.314 kb on - strand, within DDA3937_RS04415 at 975.335 kb on + strand, within DDA3937_RS04415 at 975.335 kb on + strand, within DDA3937_RS04415 at 975.336 kb on - strand, within DDA3937_RS04415 at 975.336 kb on - strand, within DDA3937_RS04415 at 975.470 kb on + strand, within DDA3937_RS04415 at 975.470 kb on + strand, within DDA3937_RS04415 at 975.470 kb on + strand, within DDA3937_RS04415 at 975.471 kb on - strand, within DDA3937_RS04415 at 975.473 kb on + strand, within DDA3937_RS04415 at 975.473 kb on + strand, within DDA3937_RS04415 at 975.473 kb on + strand, within DDA3937_RS04415 at 975.473 kb on + strand, within DDA3937_RS04415 at 975.473 kb on + strand, within DDA3937_RS04415 at 975.473 kb on + strand, within DDA3937_RS04415 at 975.473 kb on + strand, within DDA3937_RS04415 at 975.473 kb on + strand, within DDA3937_RS04415 at 975.474 kb on - strand, within DDA3937_RS04415 at 975.474 kb on - strand, within DDA3937_RS04415 at 975.474 kb on - strand, within DDA3937_RS04415 at 975.474 kb on - strand, within DDA3937_RS04415 at 975.474 kb on - strand, within DDA3937_RS04415 at 975.474 kb on - strand, within DDA3937_RS04415 at 975.474 kb on - strand, within DDA3937_RS04415 at 975.475 kb on + strand, within DDA3937_RS04415 at 975.475 kb on + strand, within DDA3937_RS04415 at 975.475 kb on + strand, within DDA3937_RS04415 at 975.475 kb on + strand, within DDA3937_RS04415 at 975.476 kb on - strand, within DDA3937_RS04415 at 975.476 kb on - strand, within DDA3937_RS04415 at 975.476 kb on - strand, within DDA3937_RS04415 at 975.476 kb on - strand, within DDA3937_RS04415 at 975.659 kb on + strand at 975.711 kb on - strand at 975.854 kb on - strand at 975.859 kb on + strand at 975.860 kb on - strand at 975.860 kb on - strand at 975.861 kb on + strand at 975.861 kb on + strand at 975.861 kb on + strand at 975.861 kb on + strand at 975.861 kb on + strand at 975.861 kb on + strand at 975.861 kb on + strand at 975.861 kb on + strand at 975.861 kb on + strand at 975.861 kb on + strand at 975.862 kb on - strand at 975.862 kb on - strand at 975.862 kb on - strand at 975.862 kb on - strand at 975.862 kb on - strand at 975.862 kb on - strand at 975.862 kb on - strand at 975.862 kb on - strand at 975.875 kb on + strand at 975.875 kb on + strand at 975.876 kb on - strand at 975.921 kb on - strand at 975.959 kb on + strand at 976.001 kb on + strand at 976.002 kb on - strand at 976.002 kb on - strand at 976.006 kb on + strand at 976.007 kb on - strand at 976.040 kb on + strand, within DDA3937_RS04420 at 976.040 kb on + strand, within DDA3937_RS04420 at 976.040 kb on + strand, within DDA3937_RS04420 at 976.040 kb on + strand, within DDA3937_RS04420 at 976.040 kb on + strand, within DDA3937_RS04420 at 976.041 kb on - strand, within DDA3937_RS04420 at 976.041 kb on - strand, within DDA3937_RS04420 at 976.446 kb on + strand, within DDA3937_RS04420 at 976.446 kb on + strand, within DDA3937_RS04420 at 976.446 kb on + strand, within DDA3937_RS04420 at 976.446 kb on + strand, within DDA3937_RS04420 at 976.446 kb on + strand, within DDA3937_RS04420 at 976.446 kb on + strand, within DDA3937_RS04420 at 976.446 kb on + strand, within DDA3937_RS04420 at 976.678 kb on - strand, within DDA3937_RS04420 at 976.690 kb on - strand, within DDA3937_RS04420 at 976.690 kb on - strand, within DDA3937_RS04420 at 976.705 kb on - strand, within DDA3937_RS04420 at 976.763 kb on + strand at 976.764 kb on - strand at 976.797 kb on + strand at 976.797 kb on + strand at 976.797 kb on + strand at 976.798 kb on - strand at 976.825 kb on + strand at 976.825 kb on + strand at 976.826 kb on - strand at 976.826 kb on - strand at 976.834 kb on + strand at 976.856 kb on - strand at 976.938 kb on + strand at 976.952 kb on - strand at 976.968 kb on + strand at 976.969 kb on - strand at 977.096 kb on - strand, within DDA3937_RS04425 at 977.268 kb on - strand, within DDA3937_RS04425 at 977.503 kb on + strand, within DDA3937_RS04425 at 977.503 kb on + strand, within DDA3937_RS04425 at 977.567 kb on + strand, within DDA3937_RS04425 at 977.567 kb on + strand, within DDA3937_RS04425 at 977.567 kb on + strand, within DDA3937_RS04425 at 977.567 kb on + strand, within DDA3937_RS04425 at 977.567 kb on + strand, within DDA3937_RS04425 at 977.567 kb on + strand, within DDA3937_RS04425 at 977.567 kb on + strand, within DDA3937_RS04425 at 977.567 kb on + strand, within DDA3937_RS04425 at 977.568 kb on - strand, within DDA3937_RS04425 at 977.568 kb on - strand, within DDA3937_RS04425 at 977.568 kb on - strand, within DDA3937_RS04425 at 977.568 kb on - strand, within DDA3937_RS04425 at 977.568 kb on - strand, within DDA3937_RS04425 at 977.568 kb on - strand, within DDA3937_RS04425 at 977.569 kb on + strand, within DDA3937_RS04425 at 977.569 kb on + strand, within DDA3937_RS04425 at 977.569 kb on + strand, within DDA3937_RS04425 at 977.570 kb on - strand, within DDA3937_RS04425 at 977.570 kb on - strand, within DDA3937_RS04425 at 977.570 kb on - strand, within DDA3937_RS04425 at 977.608 kb on + strand, within DDA3937_RS04425 at 977.608 kb on + strand, within DDA3937_RS04425 at 977.608 kb on + strand, within DDA3937_RS04425 at 977.608 kb on + strand, within DDA3937_RS04425 at 977.608 kb on + strand, within DDA3937_RS04425 at 977.614 kb on + strand, within DDA3937_RS04425 at 977.614 kb on + strand, within DDA3937_RS04425 at 977.615 kb on - strand, within DDA3937_RS04425 at 977.615 kb on - strand, within DDA3937_RS04425 at 977.777 kb on + strand at 977.777 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 974,953 + DDA3937_RS04415 0.41 -0.9 974,953 + DDA3937_RS04415 0.41 +0.5 974,953 + DDA3937_RS04415 0.41 -0.5 974,953 + DDA3937_RS04415 0.41 -0.1 974,953 + DDA3937_RS04415 0.41 -0.6 974,982 + DDA3937_RS04415 0.44 +0.6 974,983 - DDA3937_RS04415 0.44 -0.1 974,995 + DDA3937_RS04415 0.45 +0.1 974,996 - DDA3937_RS04415 0.45 -0.5 975,037 + DDA3937_RS04415 0.48 +0.6 975,038 - DDA3937_RS04415 0.48 +0.5 975,111 + DDA3937_RS04415 0.54 -0.7 975,111 + DDA3937_RS04415 0.54 -0.5 975,111 + DDA3937_RS04415 0.54 -0.0 975,111 + DDA3937_RS04415 0.54 -0.2 975,111 + DDA3937_RS04415 0.54 +0.3 975,112 - DDA3937_RS04415 0.54 -0.3 975,112 - DDA3937_RS04415 0.54 +0.1 975,112 - DDA3937_RS04415 0.54 -0.5 975,275 + DDA3937_RS04415 0.66 +2.9 975,313 + DDA3937_RS04415 0.69 -0.5 975,313 + DDA3937_RS04415 0.69 -0.1 975,313 + DDA3937_RS04415 0.69 +0.2 975,313 + DDA3937_RS04415 0.69 +1.1 975,314 - DDA3937_RS04415 0.69 +0.1 975,335 + DDA3937_RS04415 0.71 +0.6 975,335 + DDA3937_RS04415 0.71 -0.2 975,336 - DDA3937_RS04415 0.71 -0.2 975,336 - DDA3937_RS04415 0.71 -0.3 975,470 + DDA3937_RS04415 0.81 -0.0 975,470 + DDA3937_RS04415 0.81 -0.4 975,470 + DDA3937_RS04415 0.81 -1.5 975,471 - DDA3937_RS04415 0.81 -0.5 975,473 + DDA3937_RS04415 0.81 +0.1 975,473 + DDA3937_RS04415 0.81 +0.1 975,473 + DDA3937_RS04415 0.81 -0.1 975,473 + DDA3937_RS04415 0.81 +0.2 975,473 + DDA3937_RS04415 0.81 +1.1 975,473 + DDA3937_RS04415 0.81 +0.1 975,473 + DDA3937_RS04415 0.81 +0.4 975,473 + DDA3937_RS04415 0.81 -0.3 975,474 - DDA3937_RS04415 0.82 +0.1 975,474 - DDA3937_RS04415 0.82 -0.2 975,474 - DDA3937_RS04415 0.82 +0.8 975,474 - DDA3937_RS04415 0.82 -0.8 975,474 - DDA3937_RS04415 0.82 +0.5 975,474 - DDA3937_RS04415 0.82 +0.0 975,474 - DDA3937_RS04415 0.82 -2.2 975,475 + DDA3937_RS04415 0.82 -0.5 975,475 + DDA3937_RS04415 0.82 -0.0 975,475 + DDA3937_RS04415 0.82 +0.1 975,475 + DDA3937_RS04415 0.82 -0.4 975,476 - DDA3937_RS04415 0.82 -0.0 975,476 - DDA3937_RS04415 0.82 -0.2 975,476 - DDA3937_RS04415 0.82 +0.3 975,476 - DDA3937_RS04415 0.82 -1.5 975,659 + +0.3 975,711 - -0.9 975,854 - -0.5 975,859 + -0.5 975,860 - -1.7 975,860 - -0.7 975,861 + -0.9 975,861 + +1.1 975,861 + +0.6 975,861 + +0.5 975,861 + -0.2 975,861 + -0.2 975,861 + -1.5 975,861 + +0.0 975,861 + +2.7 975,861 + -0.7 975,862 - -0.1 975,862 - +1.3 975,862 - -0.2 975,862 - -2.1 975,862 - -0.5 975,862 - -1.9 975,862 - -0.3 975,862 - -0.4 975,875 + +0.4 975,875 + +1.2 975,876 - -0.7 975,921 - +0.6 975,959 + -0.3 976,001 + -0.5 976,002 - +2.1 976,002 - -0.5 976,006 + -0.4 976,007 - -1.3 976,040 + DDA3937_RS04420 0.11 -0.3 976,040 + DDA3937_RS04420 0.11 -0.4 976,040 + DDA3937_RS04420 0.11 -1.2 976,040 + DDA3937_RS04420 0.11 -1.7 976,040 + DDA3937_RS04420 0.11 -0.1 976,041 - DDA3937_RS04420 0.11 -0.9 976,041 - DDA3937_RS04420 0.11 -1.5 976,446 + DDA3937_RS04420 0.56 +0.2 976,446 + DDA3937_RS04420 0.56 -1.9 976,446 + DDA3937_RS04420 0.56 -1.5 976,446 + DDA3937_RS04420 0.56 -0.3 976,446 + DDA3937_RS04420 0.56 +0.2 976,446 + DDA3937_RS04420 0.56 -1.1 976,446 + DDA3937_RS04420 0.56 +0.8 976,678 - DDA3937_RS04420 0.82 -0.4 976,690 - DDA3937_RS04420 0.83 -0.8 976,690 - DDA3937_RS04420 0.83 -1.1 976,705 - DDA3937_RS04420 0.85 -1.5 976,763 + -0.4 976,764 - +1.1 976,797 + -0.3 976,797 + -1.0 976,797 + +0.1 976,798 - +0.3 976,825 + -0.1 976,825 + -1.3 976,826 - +0.1 976,826 - -0.5 976,834 + -1.6 976,856 - -0.1 976,938 + +0.3 976,952 - -1.1 976,968 + -0.5 976,969 - +1.6 977,096 - DDA3937_RS04425 0.20 -0.5 977,268 - DDA3937_RS04425 0.39 +0.1 977,503 + DDA3937_RS04425 0.66 -1.1 977,503 + DDA3937_RS04425 0.66 +0.2 977,567 + DDA3937_RS04425 0.73 -0.3 977,567 + DDA3937_RS04425 0.73 -0.2 977,567 + DDA3937_RS04425 0.73 +0.3 977,567 + DDA3937_RS04425 0.73 -0.7 977,567 + DDA3937_RS04425 0.73 -0.7 977,567 + DDA3937_RS04425 0.73 -0.1 977,567 + DDA3937_RS04425 0.73 -0.4 977,567 + DDA3937_RS04425 0.73 +0.1 977,568 - DDA3937_RS04425 0.73 -1.1 977,568 - DDA3937_RS04425 0.73 -1.7 977,568 - DDA3937_RS04425 0.73 -0.5 977,568 - DDA3937_RS04425 0.73 +0.9 977,568 - DDA3937_RS04425 0.73 +1.1 977,568 - DDA3937_RS04425 0.73 -0.2 977,569 + DDA3937_RS04425 0.73 -0.8 977,569 + DDA3937_RS04425 0.73 +0.5 977,569 + DDA3937_RS04425 0.73 -1.3 977,570 - DDA3937_RS04425 0.73 -0.2 977,570 - DDA3937_RS04425 0.73 +0.1 977,570 - DDA3937_RS04425 0.73 +0.3 977,608 + DDA3937_RS04425 0.78 +0.4 977,608 + DDA3937_RS04425 0.78 -0.4 977,608 + DDA3937_RS04425 0.78 +0.1 977,608 + DDA3937_RS04425 0.78 -0.5 977,608 + DDA3937_RS04425 0.78 -0.5 977,614 + DDA3937_RS04425 0.78 -1.5 977,614 + DDA3937_RS04425 0.78 -0.6 977,615 - DDA3937_RS04425 0.79 +0.3 977,615 - DDA3937_RS04425 0.79 +0.3 977,777 + -0.9 977,777 + -1.3
Or see this region's nucleotide sequence