Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS04130

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDDA3937_RS04125 and DDA3937_RS04130 are separated by 1 nucleotidesDDA3937_RS04130 and DDA3937_RS04135 are separated by 3 nucleotidesDDA3937_RS04135 and DDA3937_RS23030 are separated by 123 nucleotides DDA3937_RS04125: DDA3937_RS04125 - acetyltransferase, at 917,000 to 918,073 _RS04125 DDA3937_RS04130: DDA3937_RS04130 - hypothetical protein, at 918,075 to 918,857 _RS04130 DDA3937_RS04135: DDA3937_RS04135 - helix-turn-helix domain-containing protein, at 918,861 to 919,712 _RS04135 DDA3937_RS23030: DDA3937_RS23030 - helix-turn-helix domain containing protein, at 919,836 to 920,054 _RS23030 Position (kb) 918 919Strain fitness (log2 ratio) -2 -1 0 1at 917.208 kb on - strand, within DDA3937_RS04125at 917.332 kb on - strand, within DDA3937_RS04125at 917.332 kb on - strand, within DDA3937_RS04125at 917.397 kb on - strand, within DDA3937_RS04125at 917.443 kb on - strand, within DDA3937_RS04125at 917.459 kb on - strand, within DDA3937_RS04125at 917.459 kb on - strand, within DDA3937_RS04125at 917.565 kb on + strand, within DDA3937_RS04125at 917.700 kb on + strand, within DDA3937_RS04125at 917.701 kb on - strand, within DDA3937_RS04125at 917.839 kb on + strand, within DDA3937_RS04125at 917.839 kb on + strand, within DDA3937_RS04125at 917.840 kb on - strand, within DDA3937_RS04125at 917.870 kb on + strand, within DDA3937_RS04125at 917.938 kb on - strand, within DDA3937_RS04125at 917.938 kb on - strand, within DDA3937_RS04125at 918.150 kb on + strandat 918.170 kb on + strand, within DDA3937_RS04130at 918.202 kb on + strand, within DDA3937_RS04130at 918.506 kb on + strand, within DDA3937_RS04130at 918.830 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
917,208 - DDA3937_RS04125 0.19 -0.3
917,332 - DDA3937_RS04125 0.31 -0.7
917,332 - DDA3937_RS04125 0.31 -0.1
917,397 - DDA3937_RS04125 0.37 -2.2
917,443 - DDA3937_RS04125 0.41 -0.9
917,459 - DDA3937_RS04125 0.43 -1.7
917,459 - DDA3937_RS04125 0.43 -0.9
917,565 + DDA3937_RS04125 0.53 -2.1
917,700 + DDA3937_RS04125 0.65 +0.1
917,701 - DDA3937_RS04125 0.65 -0.5
917,839 + DDA3937_RS04125 0.78 -0.2
917,839 + DDA3937_RS04125 0.78 -0.9
917,840 - DDA3937_RS04125 0.78 -1.2
917,870 + DDA3937_RS04125 0.81 +0.4
917,938 - DDA3937_RS04125 0.87 +0.7
917,938 - DDA3937_RS04125 0.87 +0.2
918,150 + -0.5
918,170 + DDA3937_RS04130 0.12 -0.4
918,202 + DDA3937_RS04130 0.16 -0.1
918,506 + DDA3937_RS04130 0.55 -0.9
918,830 + -0.1

Or see this region's nucleotide sequence