Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS03160

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS03150 and DDA3937_RS03160 are separated by 628 nucleotidesDDA3937_RS03160 and DDA3937_RS03165 are separated by 127 nucleotides DDA3937_RS03150: DDA3937_RS03150 - purine-nucleoside phosphorylase, at 694,560 to 695,285 _RS03150 DDA3937_RS03160: DDA3937_RS03160 - VOC family protein, at 695,914 to 696,468 _RS03160 DDA3937_RS03165: DDA3937_RS03165 - LysR family transcriptional regulator, at 696,596 to 697,513 _RS03165 Position (kb) 695 696 697Strain fitness (log2 ratio) -2 -1 0 1 2at 694.923 kb on - strand, within DDA3937_RS03150at 694.923 kb on - strand, within DDA3937_RS03150at 695.040 kb on + strand, within DDA3937_RS03150at 695.040 kb on + strand, within DDA3937_RS03150at 695.040 kb on + strand, within DDA3937_RS03150at 695.040 kb on + strand, within DDA3937_RS03150at 695.041 kb on - strand, within DDA3937_RS03150at 695.041 kb on - strand, within DDA3937_RS03150at 695.118 kb on + strand, within DDA3937_RS03150at 695.118 kb on + strand, within DDA3937_RS03150at 695.125 kb on + strand, within DDA3937_RS03150at 695.126 kb on - strand, within DDA3937_RS03150at 695.270 kb on + strandat 695.296 kb on - strandat 695.296 kb on - strandat 695.298 kb on + strandat 695.298 kb on + strandat 695.298 kb on + strandat 695.298 kb on + strandat 695.298 kb on + strandat 695.298 kb on + strandat 695.299 kb on - strandat 695.299 kb on - strandat 695.299 kb on - strandat 695.306 kb on + strandat 695.353 kb on - strandat 695.353 kb on - strandat 695.353 kb on - strandat 695.353 kb on - strandat 695.353 kb on - strandat 695.357 kb on - strandat 695.663 kb on + strandat 695.663 kb on + strandat 695.663 kb on + strandat 695.663 kb on + strandat 695.718 kb on + strandat 695.718 kb on + strandat 695.719 kb on - strandat 695.719 kb on - strandat 695.788 kb on + strandat 695.788 kb on + strandat 695.798 kb on + strandat 695.875 kb on + strandat 695.876 kb on - strandat 696.051 kb on - strand, within DDA3937_RS03160at 696.061 kb on + strand, within DDA3937_RS03160at 696.061 kb on + strand, within DDA3937_RS03160at 696.062 kb on - strand, within DDA3937_RS03160at 696.062 kb on - strand, within DDA3937_RS03160at 696.143 kb on + strand, within DDA3937_RS03160at 696.143 kb on + strandat 696.421 kb on + strandat 696.518 kb on + strandat 696.518 kb on + strandat 696.518 kb on + strandat 696.536 kb on + strandat 696.537 kb on - strandat 696.821 kb on + strand, within DDA3937_RS03165at 696.821 kb on + strand, within DDA3937_RS03165at 696.822 kb on - strand, within DDA3937_RS03165at 696.822 kb on - strand, within DDA3937_RS03165at 696.822 kb on - strand, within DDA3937_RS03165at 696.946 kb on + strand, within DDA3937_RS03165at 696.947 kb on - strand, within DDA3937_RS03165at 697.032 kb on + strand, within DDA3937_RS03165at 697.032 kb on + strand, within DDA3937_RS03165at 697.032 kb on + strand, within DDA3937_RS03165at 697.032 kb on + strand, within DDA3937_RS03165at 697.032 kb on + strand, within DDA3937_RS03165at 697.032 kb on + strand, within DDA3937_RS03165at 697.032 kb on + strand, within DDA3937_RS03165at 697.033 kb on - strand, within DDA3937_RS03165at 697.033 kb on - strand, within DDA3937_RS03165at 697.033 kb on - strand, within DDA3937_RS03165at 697.033 kb on - strand, within DDA3937_RS03165at 697.033 kb on - strand, within DDA3937_RS03165at 697.033 kb on - strand, within DDA3937_RS03165at 697.033 kb on - strand, within DDA3937_RS03165at 697.036 kb on + strand, within DDA3937_RS03165at 697.036 kb on + strand, within DDA3937_RS03165at 697.037 kb on - strand, within DDA3937_RS03165at 697.095 kb on - strand, within DDA3937_RS03165at 697.095 kb on - strand, within DDA3937_RS03165at 697.116 kb on - strand, within DDA3937_RS03165at 697.116 kb on - strand, within DDA3937_RS03165at 697.178 kb on + strand, within DDA3937_RS03165at 697.178 kb on + strand, within DDA3937_RS03165at 697.178 kb on + strand, within DDA3937_RS03165at 697.178 kb on + strand, within DDA3937_RS03165at 697.178 kb on + strand, within DDA3937_RS03165at 697.179 kb on - strand, within DDA3937_RS03165at 697.179 kb on - strand, within DDA3937_RS03165at 697.179 kb on - strand, within DDA3937_RS03165at 697.179 kb on - strand, within DDA3937_RS03165at 697.179 kb on - strand, within DDA3937_RS03165at 697.214 kb on - strand, within DDA3937_RS03165at 697.241 kb on - strand, within DDA3937_RS03165at 697.241 kb on - strand, within DDA3937_RS03165at 697.333 kb on + strand, within DDA3937_RS03165at 697.333 kb on + strand, within DDA3937_RS03165at 697.334 kb on - strand, within DDA3937_RS03165at 697.347 kb on - strand, within DDA3937_RS03165at 697.424 kb on - strandat 697.443 kb on + strandat 697.444 kb on - strandat 697.455 kb on + strandat 697.455 kb on + strandat 697.455 kb on + strandat 697.455 kb on + strandat 697.455 kb on + strandat 697.455 kb on + strandat 697.455 kb on + strandat 697.456 kb on - strandat 697.456 kb on - strandat 697.456 kb on - strandat 697.456 kb on - strandat 697.456 kb on - strandat 697.456 kb on - strandat 697.456 kb on - strandat 697.458 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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694,923 - DDA3937_RS03150 0.50 -1.1
694,923 - DDA3937_RS03150 0.50 +0.6
695,040 + DDA3937_RS03150 0.66 -1.5
695,040 + DDA3937_RS03150 0.66 -1.4
695,040 + DDA3937_RS03150 0.66 -0.1
695,040 + DDA3937_RS03150 0.66 -1.1
695,041 - DDA3937_RS03150 0.66 -0.4
695,041 - DDA3937_RS03150 0.66 +0.1
695,118 + DDA3937_RS03150 0.77 -2.4
695,118 + DDA3937_RS03150 0.77 -0.5
695,125 + DDA3937_RS03150 0.78 -0.6
695,126 - DDA3937_RS03150 0.78 +0.2
695,270 + -0.2
695,296 - -0.2
695,296 - -0.7
695,298 + -1.3
695,298 + -0.8
695,298 + -1.8
695,298 + +0.6
695,298 + +0.6
695,298 + -0.1
695,299 - -0.4
695,299 - +0.6
695,299 - -0.6
695,306 + +0.8
695,353 - +0.5
695,353 - -0.4
695,353 - -0.0
695,353 - +0.3
695,353 - -0.5
695,357 - -0.6
695,663 + -0.8
695,663 + +0.8
695,663 + -0.8
695,663 + -0.2
695,718 + -1.6
695,718 + -0.7
695,719 - -0.9
695,719 - +0.1
695,788 + +0.7
695,788 + -0.5
695,798 + -0.4
695,875 + -0.0
695,876 - +0.0
696,051 - DDA3937_RS03160 0.25 -0.1
696,061 + DDA3937_RS03160 0.26 -0.7
696,061 + DDA3937_RS03160 0.26 +0.6
696,062 - DDA3937_RS03160 0.27 +0.3
696,062 - DDA3937_RS03160 0.27 +1.2
696,143 + DDA3937_RS03160 0.41 -0.1
696,143 + +2.0
696,421 + +0.9
696,518 + +0.8
696,518 + -1.1
696,518 + +1.0
696,536 + -0.8
696,537 - -0.3
696,821 + DDA3937_RS03165 0.25 +0.2
696,821 + DDA3937_RS03165 0.25 -0.1
696,822 - DDA3937_RS03165 0.25 -0.4
696,822 - DDA3937_RS03165 0.25 -0.4
696,822 - DDA3937_RS03165 0.25 -0.4
696,946 + DDA3937_RS03165 0.38 -0.2
696,947 - DDA3937_RS03165 0.38 +0.3
697,032 + DDA3937_RS03165 0.47 +0.3
697,032 + DDA3937_RS03165 0.47 -0.5
697,032 + DDA3937_RS03165 0.47 -0.4
697,032 + DDA3937_RS03165 0.47 +1.5
697,032 + DDA3937_RS03165 0.47 -1.0
697,032 + DDA3937_RS03165 0.47 +0.2
697,032 + DDA3937_RS03165 0.47 -0.4
697,033 - DDA3937_RS03165 0.48 +1.2
697,033 - DDA3937_RS03165 0.48 -0.6
697,033 - DDA3937_RS03165 0.48 -0.0
697,033 - DDA3937_RS03165 0.48 -0.3
697,033 - DDA3937_RS03165 0.48 +0.4
697,033 - DDA3937_RS03165 0.48 -0.6
697,033 - DDA3937_RS03165 0.48 -0.4
697,036 + DDA3937_RS03165 0.48 -0.7
697,036 + DDA3937_RS03165 0.48 -0.8
697,037 - DDA3937_RS03165 0.48 -0.2
697,095 - DDA3937_RS03165 0.54 -1.2
697,095 - DDA3937_RS03165 0.54 -0.1
697,116 - DDA3937_RS03165 0.57 +1.0
697,116 - DDA3937_RS03165 0.57 +1.2
697,178 + DDA3937_RS03165 0.63 -0.2
697,178 + DDA3937_RS03165 0.63 -1.0
697,178 + DDA3937_RS03165 0.63 -1.6
697,178 + DDA3937_RS03165 0.63 +0.9
697,178 + DDA3937_RS03165 0.63 -0.7
697,179 - DDA3937_RS03165 0.64 -1.0
697,179 - DDA3937_RS03165 0.64 -0.1
697,179 - DDA3937_RS03165 0.64 -1.2
697,179 - DDA3937_RS03165 0.64 -0.0
697,179 - DDA3937_RS03165 0.64 -0.5
697,214 - DDA3937_RS03165 0.67 -0.0
697,241 - DDA3937_RS03165 0.70 +1.2
697,241 - DDA3937_RS03165 0.70 -0.6
697,333 + DDA3937_RS03165 0.80 -0.7
697,333 + DDA3937_RS03165 0.80 -0.6
697,334 - DDA3937_RS03165 0.80 +0.3
697,347 - DDA3937_RS03165 0.82 +0.4
697,424 - +0.6
697,443 + +0.6
697,444 - -0.1
697,455 + -0.6
697,455 + -0.2
697,455 + -0.0
697,455 + +0.2
697,455 + +0.3
697,455 + +0.0
697,455 + +0.4
697,456 - +0.1
697,456 - +1.2
697,456 - +0.4
697,456 - -0.6
697,456 - -0.4
697,456 - -0.8
697,456 - +1.4
697,458 + +0.3

Or see this region's nucleotide sequence