Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02460 and DDA3937_RS02465 are separated by 284 nucleotides DDA3937_RS02465 and DDA3937_RS02470 are separated by 41 nucleotides
DDA3937_RS02460: DDA3937_RS02460 - TatD family hydrolase, at 544,411 to 545,253
_RS02460
DDA3937_RS02465: DDA3937_RS02465 - 4'-phosphopantetheinyl transferase superfamily protein, at 545,538 to 546,257
_RS02465
DDA3937_RS02470: DDA3937_RS02470 - SDR family NAD(P)-dependent oxidoreductase, at 546,299 to 547,063
_RS02470
Position (kb) 545
546
547 Strain fitness (log2 ratio) -2
-1
0
1
2 at 544.624 kb on + strand, within DDA3937_RS02460 at 544.651 kb on + strand, within DDA3937_RS02460 at 544.651 kb on + strand, within DDA3937_RS02460 at 544.651 kb on + strand, within DDA3937_RS02460 at 544.652 kb on - strand, within DDA3937_RS02460 at 544.753 kb on + strand, within DDA3937_RS02460 at 544.754 kb on - strand, within DDA3937_RS02460 at 544.754 kb on - strand, within DDA3937_RS02460 at 544.754 kb on - strand, within DDA3937_RS02460 at 544.754 kb on - strand, within DDA3937_RS02460 at 544.754 kb on - strand, within DDA3937_RS02460 at 544.807 kb on - strand, within DDA3937_RS02460 at 544.877 kb on + strand, within DDA3937_RS02460 at 544.878 kb on - strand, within DDA3937_RS02460 at 544.934 kb on - strand, within DDA3937_RS02460 at 544.934 kb on - strand, within DDA3937_RS02460 at 544.966 kb on + strand, within DDA3937_RS02460 at 544.967 kb on - strand, within DDA3937_RS02460 at 544.967 kb on - strand, within DDA3937_RS02460 at 544.969 kb on + strand, within DDA3937_RS02460 at 544.969 kb on + strand, within DDA3937_RS02460 at 544.970 kb on - strand, within DDA3937_RS02460 at 544.970 kb on - strand, within DDA3937_RS02460 at 544.997 kb on - strand, within DDA3937_RS02460 at 545.121 kb on + strand, within DDA3937_RS02460 at 545.124 kb on + strand, within DDA3937_RS02460 at 545.124 kb on + strand, within DDA3937_RS02460 at 545.124 kb on + strand, within DDA3937_RS02460 at 545.124 kb on + strand, within DDA3937_RS02460 at 545.124 kb on + strand, within DDA3937_RS02460 at 545.125 kb on - strand, within DDA3937_RS02460 at 545.125 kb on - strand, within DDA3937_RS02460 at 545.125 kb on - strand, within DDA3937_RS02460 at 545.271 kb on + strand at 545.305 kb on - strand at 545.305 kb on - strand at 545.307 kb on + strand at 545.307 kb on + strand at 545.307 kb on + strand at 545.307 kb on + strand at 545.308 kb on - strand at 545.317 kb on + strand at 545.317 kb on + strand at 545.318 kb on - strand at 545.340 kb on - strand at 545.425 kb on - strand at 545.456 kb on - strand at 545.471 kb on + strand at 545.472 kb on - strand at 545.481 kb on + strand at 545.481 kb on + strand at 545.482 kb on - strand at 545.482 kb on - strand at 545.559 kb on - strand at 545.604 kb on + strand at 545.604 kb on + strand at 545.604 kb on + strand at 545.605 kb on - strand at 545.784 kb on + strand, within DDA3937_RS02465 at 545.784 kb on + strand, within DDA3937_RS02465 at 545.784 kb on + strand, within DDA3937_RS02465 at 545.784 kb on + strand, within DDA3937_RS02465 at 545.784 kb on + strand, within DDA3937_RS02465 at 545.784 kb on + strand, within DDA3937_RS02465 at 545.784 kb on + strand, within DDA3937_RS02465 at 545.785 kb on - strand, within DDA3937_RS02465 at 545.785 kb on - strand, within DDA3937_RS02465 at 545.785 kb on - strand, within DDA3937_RS02465 at 545.832 kb on - strand, within DDA3937_RS02465 at 545.952 kb on - strand, within DDA3937_RS02465 at 545.952 kb on - strand, within DDA3937_RS02465 at 545.986 kb on - strand, within DDA3937_RS02465 at 545.986 kb on - strand, within DDA3937_RS02465 at 546.026 kb on + strand, within DDA3937_RS02465 at 546.027 kb on - strand, within DDA3937_RS02465 at 546.064 kb on - strand, within DDA3937_RS02465 at 546.075 kb on + strand, within DDA3937_RS02465 at 546.075 kb on + strand, within DDA3937_RS02465 at 546.075 kb on + strand, within DDA3937_RS02465 at 546.076 kb on - strand, within DDA3937_RS02465 at 546.213 kb on + strand at 546.213 kb on + strand at 546.214 kb on - strand at 546.214 kb on - strand at 546.214 kb on - strand at 546.321 kb on + strand at 546.321 kb on + strand at 546.550 kb on + strand, within DDA3937_RS02470 at 546.746 kb on + strand, within DDA3937_RS02470 at 546.747 kb on - strand, within DDA3937_RS02470 at 546.747 kb on - strand, within DDA3937_RS02470 at 546.747 kb on - strand, within DDA3937_RS02470 at 546.747 kb on - strand, within DDA3937_RS02470 at 546.747 kb on - strand, within DDA3937_RS02470 at 546.747 kb on - strand, within DDA3937_RS02470 at 546.747 kb on - strand, within DDA3937_RS02470 at 546.776 kb on + strand at 546.776 kb on + strand, within DDA3937_RS02470 at 546.776 kb on + strand, within DDA3937_RS02470 at 546.776 kb on + strand, within DDA3937_RS02470 at 546.777 kb on - strand, within DDA3937_RS02470 at 546.833 kb on - strand, within DDA3937_RS02470 at 546.833 kb on - strand, within DDA3937_RS02470 at 546.907 kb on + strand, within DDA3937_RS02470 at 546.908 kb on - strand, within DDA3937_RS02470 at 547.007 kb on + strand at 547.058 kb on - strand at 547.061 kb on + strand at 547.061 kb on + strand at 547.061 kb on + strand at 547.061 kb on + strand at 547.062 kb on - strand at 547.062 kb on - strand at 547.062 kb on - strand at 547.101 kb on + strand at 547.101 kb on + strand at 547.102 kb on - strand at 547.144 kb on + strand at 547.144 kb on + strand at 547.145 kb on - strand at 547.147 kb on + strand at 547.148 kb on - strand at 547.167 kb on - strand at 547.167 kb on - strand at 547.213 kb on - strand at 547.229 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 544,624 + DDA3937_RS02460 0.25 -0.2 544,651 + DDA3937_RS02460 0.28 -0.5 544,651 + DDA3937_RS02460 0.28 +0.0 544,651 + DDA3937_RS02460 0.28 +1.2 544,652 - DDA3937_RS02460 0.29 +0.8 544,753 + DDA3937_RS02460 0.41 -1.1 544,754 - DDA3937_RS02460 0.41 -0.9 544,754 - DDA3937_RS02460 0.41 -0.9 544,754 - DDA3937_RS02460 0.41 +0.2 544,754 - DDA3937_RS02460 0.41 -0.3 544,754 - DDA3937_RS02460 0.41 -1.4 544,807 - DDA3937_RS02460 0.47 -0.3 544,877 + DDA3937_RS02460 0.55 -0.0 544,878 - DDA3937_RS02460 0.55 -0.0 544,934 - DDA3937_RS02460 0.62 -0.0 544,934 - DDA3937_RS02460 0.62 -0.1 544,966 + DDA3937_RS02460 0.66 -0.7 544,967 - DDA3937_RS02460 0.66 +0.1 544,967 - DDA3937_RS02460 0.66 -0.2 544,969 + DDA3937_RS02460 0.66 +1.0 544,969 + DDA3937_RS02460 0.66 +0.2 544,970 - DDA3937_RS02460 0.66 +0.2 544,970 - DDA3937_RS02460 0.66 -0.0 544,997 - DDA3937_RS02460 0.70 -0.8 545,121 + DDA3937_RS02460 0.84 +0.7 545,124 + DDA3937_RS02460 0.85 -1.1 545,124 + DDA3937_RS02460 0.85 -1.6 545,124 + DDA3937_RS02460 0.85 -0.9 545,124 + DDA3937_RS02460 0.85 -0.2 545,124 + DDA3937_RS02460 0.85 +0.7 545,125 - DDA3937_RS02460 0.85 +0.4 545,125 - DDA3937_RS02460 0.85 -0.4 545,125 - DDA3937_RS02460 0.85 +1.0 545,271 + -0.1 545,305 - +0.7 545,305 - +0.2 545,307 + +1.0 545,307 + -0.2 545,307 + -0.2 545,307 + +0.2 545,308 - +0.9 545,317 + +0.8 545,317 + -0.2 545,318 - +0.2 545,340 - -0.9 545,425 - +0.3 545,456 - -0.2 545,471 + -0.4 545,472 - +0.6 545,481 + -0.1 545,481 + -0.2 545,482 - -0.2 545,482 - -0.6 545,559 - -0.0 545,604 + +0.0 545,604 + +0.1 545,604 + -1.1 545,605 - -0.3 545,784 + DDA3937_RS02465 0.34 -0.2 545,784 + DDA3937_RS02465 0.34 +0.5 545,784 + DDA3937_RS02465 0.34 -0.2 545,784 + DDA3937_RS02465 0.34 -0.7 545,784 + DDA3937_RS02465 0.34 -0.5 545,784 + DDA3937_RS02465 0.34 -0.4 545,784 + DDA3937_RS02465 0.34 -1.0 545,785 - DDA3937_RS02465 0.34 +0.7 545,785 - DDA3937_RS02465 0.34 -1.0 545,785 - DDA3937_RS02465 0.34 -0.3 545,832 - DDA3937_RS02465 0.41 +0.1 545,952 - DDA3937_RS02465 0.57 -0.5 545,952 - DDA3937_RS02465 0.57 -0.1 545,986 - DDA3937_RS02465 0.62 -1.6 545,986 - DDA3937_RS02465 0.62 -0.0 546,026 + DDA3937_RS02465 0.68 +1.2 546,027 - DDA3937_RS02465 0.68 -1.2 546,064 - DDA3937_RS02465 0.73 -0.5 546,075 + DDA3937_RS02465 0.75 -1.2 546,075 + DDA3937_RS02465 0.75 +1.0 546,075 + DDA3937_RS02465 0.75 -0.5 546,076 - DDA3937_RS02465 0.75 -0.8 546,213 + -0.0 546,213 + +0.4 546,214 - +0.1 546,214 - +0.1 546,214 - +0.6 546,321 + -0.4 546,321 + +0.2 546,550 + DDA3937_RS02470 0.33 +1.0 546,746 + DDA3937_RS02470 0.58 +0.4 546,747 - DDA3937_RS02470 0.59 -0.6 546,747 - DDA3937_RS02470 0.59 +0.6 546,747 - DDA3937_RS02470 0.59 +0.1 546,747 - DDA3937_RS02470 0.59 -2.2 546,747 - DDA3937_RS02470 0.59 +0.1 546,747 - DDA3937_RS02470 0.59 -1.6 546,747 - DDA3937_RS02470 0.59 -0.2 546,776 + +0.2 546,776 + DDA3937_RS02470 0.62 -0.3 546,776 + DDA3937_RS02470 0.62 -0.4 546,776 + DDA3937_RS02470 0.62 +0.5 546,777 - DDA3937_RS02470 0.62 -0.4 546,833 - DDA3937_RS02470 0.70 +0.7 546,833 - DDA3937_RS02470 0.70 +0.6 546,907 + DDA3937_RS02470 0.79 +0.7 546,908 - DDA3937_RS02470 0.80 -0.2 547,007 + +0.9 547,058 - +1.7 547,061 + -0.7 547,061 + +1.0 547,061 + -1.1 547,061 + +0.1 547,062 - +0.6 547,062 - +1.0 547,062 - +2.2 547,101 + -0.0 547,101 + +0.3 547,102 - -1.2 547,144 + -0.7 547,144 + -1.4 547,145 - +0.8 547,147 + -1.6 547,148 - -0.3 547,167 - -1.3 547,167 - -0.1 547,213 - -0.4 547,229 - -0.3
Or see this region's nucleotide sequence