Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS02460

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS02450 and DDA3937_RS21810 are separated by 160 nucleotidesDDA3937_RS21810 and DDA3937_RS02455 are separated by 99 nucleotidesDDA3937_RS02455 and DDA3937_RS02460 are separated by 70 nucleotidesDDA3937_RS02460 and DDA3937_RS02465 are separated by 284 nucleotides DDA3937_RS02450: DDA3937_RS02450 - molecular chaperone OsmY, at 543,074 to 543,730 _RS02450 DDA3937_RS21810: DDA3937_RS21810 - DUF1328 domain-containing protein, at 543,891 to 544,052 _RS21810 DDA3937_RS02455: DDA3937_RS02455 - stress response protein, at 544,152 to 544,340 _RS02455 DDA3937_RS02460: DDA3937_RS02460 - TatD family hydrolase, at 544,411 to 545,253 _RS02460 DDA3937_RS02465: DDA3937_RS02465 - 4'-phosphopantetheinyl transferase superfamily protein, at 545,538 to 546,257 _RS02465 Position (kb) 544 545 546Strain fitness (log2 ratio) -2 -1 0 1 2 3at 543.474 kb on + strand, within DDA3937_RS02450at 543.498 kb on + strand, within DDA3937_RS02450at 543.498 kb on + strand, within DDA3937_RS02450at 543.498 kb on + strand, within DDA3937_RS02450at 543.515 kb on + strand, within DDA3937_RS02450at 543.515 kb on + strand, within DDA3937_RS02450at 543.515 kb on + strand, within DDA3937_RS02450at 543.515 kb on + strand, within DDA3937_RS02450at 543.516 kb on - strand, within DDA3937_RS02450at 543.516 kb on - strand, within DDA3937_RS02450at 543.516 kb on - strand, within DDA3937_RS02450at 543.516 kb on - strand, within DDA3937_RS02450at 543.516 kb on - strand, within DDA3937_RS02450at 543.597 kb on + strand, within DDA3937_RS02450at 543.598 kb on - strand, within DDA3937_RS02450at 543.598 kb on - strand, within DDA3937_RS02450at 543.598 kb on - strand, within DDA3937_RS02450at 543.733 kb on + strandat 543.733 kb on + strandat 543.733 kb on + strandat 543.734 kb on - strandat 543.734 kb on - strandat 543.734 kb on - strandat 543.771 kb on + strandat 543.824 kb on + strandat 543.824 kb on + strandat 543.825 kb on - strandat 543.825 kb on - strandat 543.825 kb on - strandat 543.825 kb on - strandat 543.825 kb on - strandat 543.825 kb on - strandat 543.825 kb on - strandat 543.825 kb on - strandat 543.825 kb on - strandat 543.846 kb on + strandat 543.908 kb on + strand, within DDA3937_RS21810at 543.908 kb on + strand, within DDA3937_RS21810at 543.909 kb on - strand, within DDA3937_RS21810at 544.007 kb on + strand, within DDA3937_RS21810at 544.007 kb on + strand, within DDA3937_RS21810at 544.008 kb on - strand, within DDA3937_RS21810at 544.030 kb on + strand, within DDA3937_RS21810at 544.031 kb on - strand, within DDA3937_RS21810at 544.050 kb on + strandat 544.050 kb on + strandat 544.051 kb on - strandat 544.073 kb on + strandat 544.073 kb on + strandat 544.073 kb on + strandat 544.085 kb on - strandat 544.085 kb on - strandat 544.287 kb on + strand, within DDA3937_RS02455at 544.287 kb on + strand, within DDA3937_RS02455at 544.287 kb on + strand, within DDA3937_RS02455at 544.288 kb on - strand, within DDA3937_RS02455at 544.288 kb on - strand, within DDA3937_RS02455at 544.288 kb on - strand, within DDA3937_RS02455at 544.288 kb on - strand, within DDA3937_RS02455at 544.363 kb on + strandat 544.364 kb on - strandat 544.367 kb on + strandat 544.368 kb on - strandat 544.624 kb on + strand, within DDA3937_RS02460at 544.651 kb on + strand, within DDA3937_RS02460at 544.651 kb on + strand, within DDA3937_RS02460at 544.651 kb on + strand, within DDA3937_RS02460at 544.652 kb on - strand, within DDA3937_RS02460at 544.753 kb on + strand, within DDA3937_RS02460at 544.754 kb on - strand, within DDA3937_RS02460at 544.754 kb on - strand, within DDA3937_RS02460at 544.754 kb on - strand, within DDA3937_RS02460at 544.754 kb on - strand, within DDA3937_RS02460at 544.754 kb on - strand, within DDA3937_RS02460at 544.807 kb on - strand, within DDA3937_RS02460at 544.877 kb on + strand, within DDA3937_RS02460at 544.878 kb on - strand, within DDA3937_RS02460at 544.934 kb on - strand, within DDA3937_RS02460at 544.934 kb on - strand, within DDA3937_RS02460at 544.966 kb on + strand, within DDA3937_RS02460at 544.967 kb on - strand, within DDA3937_RS02460at 544.967 kb on - strand, within DDA3937_RS02460at 544.969 kb on + strand, within DDA3937_RS02460at 544.969 kb on + strand, within DDA3937_RS02460at 544.970 kb on - strand, within DDA3937_RS02460at 544.970 kb on - strand, within DDA3937_RS02460at 544.997 kb on - strand, within DDA3937_RS02460at 545.121 kb on + strand, within DDA3937_RS02460at 545.124 kb on + strand, within DDA3937_RS02460at 545.124 kb on + strand, within DDA3937_RS02460at 545.124 kb on + strand, within DDA3937_RS02460at 545.124 kb on + strand, within DDA3937_RS02460at 545.124 kb on + strand, within DDA3937_RS02460at 545.125 kb on - strand, within DDA3937_RS02460at 545.125 kb on - strand, within DDA3937_RS02460at 545.125 kb on - strand, within DDA3937_RS02460at 545.271 kb on + strandat 545.305 kb on - strandat 545.305 kb on - strandat 545.307 kb on + strandat 545.307 kb on + strandat 545.307 kb on + strandat 545.307 kb on + strandat 545.308 kb on - strandat 545.317 kb on + strandat 545.317 kb on + strandat 545.318 kb on - strandat 545.340 kb on - strandat 545.425 kb on - strandat 545.456 kb on - strandat 545.471 kb on + strandat 545.472 kb on - strandat 545.481 kb on + strandat 545.481 kb on + strandat 545.482 kb on - strandat 545.482 kb on - strandat 545.559 kb on - strandat 545.604 kb on + strandat 545.604 kb on + strandat 545.604 kb on + strandat 545.605 kb on - strandat 545.784 kb on + strand, within DDA3937_RS02465at 545.784 kb on + strand, within DDA3937_RS02465at 545.784 kb on + strand, within DDA3937_RS02465at 545.784 kb on + strand, within DDA3937_RS02465at 545.784 kb on + strand, within DDA3937_RS02465at 545.784 kb on + strand, within DDA3937_RS02465at 545.784 kb on + strand, within DDA3937_RS02465at 545.785 kb on - strand, within DDA3937_RS02465at 545.785 kb on - strand, within DDA3937_RS02465at 545.785 kb on - strand, within DDA3937_RS02465at 545.832 kb on - strand, within DDA3937_RS02465at 545.952 kb on - strand, within DDA3937_RS02465at 545.952 kb on - strand, within DDA3937_RS02465at 545.986 kb on - strand, within DDA3937_RS02465at 545.986 kb on - strand, within DDA3937_RS02465at 546.026 kb on + strand, within DDA3937_RS02465at 546.027 kb on - strand, within DDA3937_RS02465at 546.064 kb on - strand, within DDA3937_RS02465at 546.075 kb on + strand, within DDA3937_RS02465at 546.075 kb on + strand, within DDA3937_RS02465at 546.075 kb on + strand, within DDA3937_RS02465at 546.076 kb on - strand, within DDA3937_RS02465at 546.213 kb on + strandat 546.213 kb on + strandat 546.214 kb on - strandat 546.214 kb on - strandat 546.214 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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543,474 + DDA3937_RS02450 0.61 +0.8
543,498 + DDA3937_RS02450 0.65 +0.1
543,498 + DDA3937_RS02450 0.65 -0.8
543,498 + DDA3937_RS02450 0.65 -0.9
543,515 + DDA3937_RS02450 0.67 +0.2
543,515 + DDA3937_RS02450 0.67 +2.8
543,515 + DDA3937_RS02450 0.67 -0.4
543,515 + DDA3937_RS02450 0.67 +0.8
543,516 - DDA3937_RS02450 0.67 -0.8
543,516 - DDA3937_RS02450 0.67 -0.4
543,516 - DDA3937_RS02450 0.67 +1.5
543,516 - DDA3937_RS02450 0.67 -0.0
543,516 - DDA3937_RS02450 0.67 +0.7
543,597 + DDA3937_RS02450 0.80 +1.0
543,598 - DDA3937_RS02450 0.80 +0.2
543,598 - DDA3937_RS02450 0.80 +1.6
543,598 - DDA3937_RS02450 0.80 +0.5
543,733 + -0.3
543,733 + +0.1
543,733 + +0.9
543,734 - -0.1
543,734 - +0.6
543,734 - -0.1
543,771 + -1.0
543,824 + -1.1
543,824 + +0.2
543,825 - -0.2
543,825 - -0.5
543,825 - -0.1
543,825 - -0.2
543,825 - -0.3
543,825 - -0.5
543,825 - -0.8
543,825 - -0.2
543,825 - -1.0
543,846 + -0.9
543,908 + DDA3937_RS21810 0.10 -0.6
543,908 + DDA3937_RS21810 0.10 -0.2
543,909 - DDA3937_RS21810 0.11 -1.4
544,007 + DDA3937_RS21810 0.72 -0.8
544,007 + DDA3937_RS21810 0.72 -0.7
544,008 - DDA3937_RS21810 0.72 -0.0
544,030 + DDA3937_RS21810 0.86 +0.0
544,031 - DDA3937_RS21810 0.86 -0.0
544,050 + -0.1
544,050 + +0.5
544,051 - -0.8
544,073 + -0.2
544,073 + +0.3
544,073 + +0.9
544,085 - -0.0
544,085 - -1.0
544,287 + DDA3937_RS02455 0.71 -1.4
544,287 + DDA3937_RS02455 0.71 -0.7
544,287 + DDA3937_RS02455 0.71 +1.2
544,288 - DDA3937_RS02455 0.72 -0.6
544,288 - DDA3937_RS02455 0.72 +1.2
544,288 - DDA3937_RS02455 0.72 -0.6
544,288 - DDA3937_RS02455 0.72 -0.3
544,363 + -0.4
544,364 - +1.8
544,367 + -0.2
544,368 - -1.9
544,624 + DDA3937_RS02460 0.25 -0.2
544,651 + DDA3937_RS02460 0.28 -0.5
544,651 + DDA3937_RS02460 0.28 +0.0
544,651 + DDA3937_RS02460 0.28 +1.2
544,652 - DDA3937_RS02460 0.29 +0.8
544,753 + DDA3937_RS02460 0.41 -1.1
544,754 - DDA3937_RS02460 0.41 -0.9
544,754 - DDA3937_RS02460 0.41 -0.9
544,754 - DDA3937_RS02460 0.41 +0.2
544,754 - DDA3937_RS02460 0.41 -0.3
544,754 - DDA3937_RS02460 0.41 -1.4
544,807 - DDA3937_RS02460 0.47 -0.3
544,877 + DDA3937_RS02460 0.55 -0.0
544,878 - DDA3937_RS02460 0.55 -0.0
544,934 - DDA3937_RS02460 0.62 -0.0
544,934 - DDA3937_RS02460 0.62 -0.1
544,966 + DDA3937_RS02460 0.66 -0.7
544,967 - DDA3937_RS02460 0.66 +0.1
544,967 - DDA3937_RS02460 0.66 -0.2
544,969 + DDA3937_RS02460 0.66 +1.0
544,969 + DDA3937_RS02460 0.66 +0.2
544,970 - DDA3937_RS02460 0.66 +0.2
544,970 - DDA3937_RS02460 0.66 -0.0
544,997 - DDA3937_RS02460 0.70 -0.8
545,121 + DDA3937_RS02460 0.84 +0.7
545,124 + DDA3937_RS02460 0.85 -1.1
545,124 + DDA3937_RS02460 0.85 -1.6
545,124 + DDA3937_RS02460 0.85 -0.9
545,124 + DDA3937_RS02460 0.85 -0.2
545,124 + DDA3937_RS02460 0.85 +0.7
545,125 - DDA3937_RS02460 0.85 +0.4
545,125 - DDA3937_RS02460 0.85 -0.4
545,125 - DDA3937_RS02460 0.85 +1.0
545,271 + -0.1
545,305 - +0.7
545,305 - +0.2
545,307 + +1.0
545,307 + -0.2
545,307 + -0.2
545,307 + +0.2
545,308 - +0.9
545,317 + +0.8
545,317 + -0.2
545,318 - +0.2
545,340 - -0.9
545,425 - +0.3
545,456 - -0.2
545,471 + -0.4
545,472 - +0.6
545,481 + -0.1
545,481 + -0.2
545,482 - -0.2
545,482 - -0.6
545,559 - -0.0
545,604 + +0.0
545,604 + +0.1
545,604 + -1.1
545,605 - -0.3
545,784 + DDA3937_RS02465 0.34 -0.2
545,784 + DDA3937_RS02465 0.34 +0.5
545,784 + DDA3937_RS02465 0.34 -0.2
545,784 + DDA3937_RS02465 0.34 -0.7
545,784 + DDA3937_RS02465 0.34 -0.5
545,784 + DDA3937_RS02465 0.34 -0.4
545,784 + DDA3937_RS02465 0.34 -1.0
545,785 - DDA3937_RS02465 0.34 +0.7
545,785 - DDA3937_RS02465 0.34 -1.0
545,785 - DDA3937_RS02465 0.34 -0.3
545,832 - DDA3937_RS02465 0.41 +0.1
545,952 - DDA3937_RS02465 0.57 -0.5
545,952 - DDA3937_RS02465 0.57 -0.1
545,986 - DDA3937_RS02465 0.62 -1.6
545,986 - DDA3937_RS02465 0.62 -0.0
546,026 + DDA3937_RS02465 0.68 +1.2
546,027 - DDA3937_RS02465 0.68 -1.2
546,064 - DDA3937_RS02465 0.73 -0.5
546,075 + DDA3937_RS02465 0.75 -1.2
546,075 + DDA3937_RS02465 0.75 +1.0
546,075 + DDA3937_RS02465 0.75 -0.5
546,076 - DDA3937_RS02465 0.75 -0.8
546,213 + -0.0
546,213 + +0.4
546,214 - +0.1
546,214 - +0.1
546,214 - +0.6

Or see this region's nucleotide sequence