Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02260 and DDA3937_RS21795 are separated by 230 nucleotides DDA3937_RS21795 and DDA3937_RS02265 are separated by 170 nucleotides DDA3937_RS02265 and DDA3937_RS02270 overlap by 4 nucleotides DDA3937_RS02270 and DDA3937_RS02275 are separated by 44 nucleotides
DDA3937_RS02260: DDA3937_RS02260 - 1-aminocyclopropane-1-carboxylate deaminase, at 501,271 to 502,287
_RS02260
DDA3937_RS21795: DDA3937_RS21795 - CopG family transcriptional regulator, at 502,518 to 502,700
_RS21795
DDA3937_RS02265: DDA3937_RS02265 - AAA family ATPase, at 502,871 to 503,962
_RS02265
DDA3937_RS02270: DDA3937_RS02270 - DUF4276 family protein, at 503,959 to 504,612
_RS02270
DDA3937_RS02275: DDA3937_RS02275 - Lrp/AsnC ligand binding domain-containing protein, at 504,657 to 505,160
_RS02275
Position (kb) 502
503
504 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 501.977 kb on + strand, within DDA3937_RS02260 at 501.978 kb on - strand, within DDA3937_RS02260 at 501.978 kb on - strand, within DDA3937_RS02260 at 502.150 kb on + strand, within DDA3937_RS02260 at 502.173 kb on + strand, within DDA3937_RS02260 at 502.174 kb on - strand, within DDA3937_RS02260 at 502.174 kb on - strand at 502.174 kb on - strand, within DDA3937_RS02260 at 502.225 kb on + strand at 502.225 kb on + strand at 502.225 kb on + strand at 502.225 kb on + strand at 502.254 kb on - strand at 502.261 kb on + strand at 502.261 kb on + strand at 502.261 kb on + strand at 502.267 kb on + strand at 502.267 kb on + strand at 502.268 kb on - strand at 502.268 kb on - strand at 502.269 kb on + strand at 502.270 kb on - strand at 502.270 kb on - strand at 502.270 kb on - strand at 502.270 kb on - strand at 502.294 kb on + strand at 502.316 kb on + strand at 502.316 kb on + strand at 502.316 kb on + strand at 502.316 kb on + strand at 502.316 kb on + strand at 502.316 kb on + strand at 502.316 kb on + strand at 502.316 kb on + strand at 502.316 kb on + strand at 502.316 kb on + strand at 502.316 kb on + strand at 502.316 kb on + strand at 502.317 kb on - strand at 502.317 kb on - strand at 502.317 kb on - strand at 502.317 kb on - strand at 502.317 kb on - strand at 502.317 kb on - strand at 502.317 kb on - strand at 502.317 kb on - strand at 502.317 kb on - strand at 502.317 kb on - strand at 502.329 kb on - strand at 502.360 kb on + strand at 502.360 kb on + strand at 502.360 kb on + strand at 502.361 kb on - strand at 502.361 kb on - strand at 502.361 kb on - strand at 502.374 kb on + strand at 502.374 kb on + strand at 502.374 kb on + strand at 502.385 kb on - strand at 502.385 kb on - strand at 502.385 kb on - strand at 502.385 kb on - strand at 502.398 kb on - strand at 502.398 kb on - strand at 502.398 kb on - strand at 502.398 kb on - strand at 502.450 kb on + strand at 502.450 kb on + strand at 502.450 kb on + strand at 502.463 kb on + strand at 502.482 kb on - strand at 502.487 kb on + strand at 502.487 kb on + strand at 502.487 kb on + strand at 502.487 kb on + strand at 502.487 kb on + strand at 502.488 kb on - strand at 502.489 kb on + strand at 502.489 kb on + strand at 502.489 kb on + strand at 502.489 kb on + strand at 502.489 kb on + strand at 502.489 kb on + strand at 502.490 kb on - strand at 502.490 kb on - strand at 502.490 kb on - strand at 502.490 kb on - strand at 502.490 kb on - strand at 502.532 kb on + strand at 502.532 kb on + strand at 502.536 kb on - strand at 502.586 kb on + strand, within DDA3937_RS21795 at 502.587 kb on - strand, within DDA3937_RS21795 at 502.587 kb on - strand, within DDA3937_RS21795 at 502.587 kb on - strand at 502.704 kb on - strand at 502.810 kb on + strand at 502.810 kb on + strand at 502.810 kb on + strand at 502.810 kb on + strand at 502.810 kb on + strand at 502.811 kb on - strand at 502.811 kb on - strand at 502.811 kb on - strand at 502.811 kb on - strand at 502.811 kb on - strand at 502.811 kb on - strand at 502.811 kb on - strand at 502.814 kb on + strand at 502.815 kb on - strand at 502.815 kb on - strand at 502.994 kb on - strand, within DDA3937_RS02265 at 503.156 kb on - strand, within DDA3937_RS02265 at 503.549 kb on - strand at 503.618 kb on - strand, within DDA3937_RS02265 at 503.718 kb on - strand, within DDA3937_RS02265 at 503.743 kb on - strand, within DDA3937_RS02265 at 503.773 kb on - strand, within DDA3937_RS02265 at 503.906 kb on + strand at 503.906 kb on + strand at 503.906 kb on + strand at 503.907 kb on - strand at 503.907 kb on - strand at 503.908 kb on + strand at 503.908 kb on + strand at 503.908 kb on + strand at 503.908 kb on + strand at 503.909 kb on - strand at 503.909 kb on - strand at 503.909 kb on - strand at 503.909 kb on - strand at 503.909 kb on - strand at 503.909 kb on - strand at 503.974 kb on - strand at 503.974 kb on - strand at 503.974 kb on - strand at 504.037 kb on + strand, within DDA3937_RS02270 at 504.085 kb on + strand, within DDA3937_RS02270 at 504.086 kb on - strand, within DDA3937_RS02270 at 504.087 kb on + strand, within DDA3937_RS02270 at 504.087 kb on + strand, within DDA3937_RS02270 at 504.087 kb on + strand, within DDA3937_RS02270 at 504.088 kb on - strand, within DDA3937_RS02270 at 504.088 kb on - strand, within DDA3937_RS02270 at 504.088 kb on - strand, within DDA3937_RS02270 at 504.098 kb on + strand, within DDA3937_RS02270 at 504.099 kb on - strand, within DDA3937_RS02270 at 504.099 kb on - strand, within DDA3937_RS02270 at 504.099 kb on - strand, within DDA3937_RS02270 at 504.099 kb on - strand, within DDA3937_RS02270 at 504.099 kb on - strand, within DDA3937_RS02270 at 504.106 kb on + strand, within DDA3937_RS02270 at 504.106 kb on + strand, within DDA3937_RS02270 at 504.107 kb on - strand, within DDA3937_RS02270 at 504.128 kb on + strand, within DDA3937_RS02270 at 504.129 kb on - strand, within DDA3937_RS02270 at 504.129 kb on - strand, within DDA3937_RS02270 at 504.141 kb on + strand, within DDA3937_RS02270 at 504.141 kb on + strand, within DDA3937_RS02270 at 504.142 kb on - strand, within DDA3937_RS02270 at 504.176 kb on + strand, within DDA3937_RS02270 at 504.176 kb on + strand, within DDA3937_RS02270 at 504.176 kb on + strand, within DDA3937_RS02270 at 504.176 kb on + strand, within DDA3937_RS02270 at 504.176 kb on + strand, within DDA3937_RS02270 at 504.176 kb on + strand at 504.176 kb on + strand, within DDA3937_RS02270 at 504.176 kb on + strand, within DDA3937_RS02270 at 504.177 kb on - strand, within DDA3937_RS02270 at 504.177 kb on - strand, within DDA3937_RS02270 at 504.177 kb on - strand, within DDA3937_RS02270 at 504.177 kb on - strand, within DDA3937_RS02270 at 504.177 kb on - strand, within DDA3937_RS02270 at 504.177 kb on - strand, within DDA3937_RS02270 at 504.177 kb on - strand, within DDA3937_RS02270 at 504.177 kb on - strand, within DDA3937_RS02270 at 504.177 kb on - strand, within DDA3937_RS02270 at 504.177 kb on - strand, within DDA3937_RS02270 at 504.181 kb on + strand, within DDA3937_RS02270 at 504.181 kb on + strand, within DDA3937_RS02270 at 504.181 kb on + strand, within DDA3937_RS02270 at 504.182 kb on - strand, within DDA3937_RS02270 at 504.182 kb on - strand, within DDA3937_RS02270 at 504.184 kb on + strand, within DDA3937_RS02270 at 504.184 kb on + strand, within DDA3937_RS02270 at 504.185 kb on - strand, within DDA3937_RS02270 at 504.185 kb on - strand, within DDA3937_RS02270 at 504.185 kb on - strand, within DDA3937_RS02270 at 504.185 kb on - strand, within DDA3937_RS02270 at 504.244 kb on + strand, within DDA3937_RS02270 at 504.244 kb on + strand at 504.276 kb on + strand, within DDA3937_RS02270 at 504.276 kb on + strand at 504.276 kb on + strand, within DDA3937_RS02270 at 504.276 kb on + strand, within DDA3937_RS02270 at 504.277 kb on - strand, within DDA3937_RS02270 at 504.277 kb on - strand, within DDA3937_RS02270 at 504.285 kb on + strand, within DDA3937_RS02270 at 504.286 kb on - strand, within DDA3937_RS02270 at 504.286 kb on - strand, within DDA3937_RS02270 at 504.328 kb on + strand, within DDA3937_RS02270 at 504.329 kb on - strand, within DDA3937_RS02270 at 504.445 kb on - strand, within DDA3937_RS02270 at 504.468 kb on + strand, within DDA3937_RS02270 at 504.468 kb on + strand, within DDA3937_RS02270 at 504.474 kb on + strand, within DDA3937_RS02270 at 504.486 kb on + strand, within DDA3937_RS02270 at 504.492 kb on + strand, within DDA3937_RS02270 at 504.492 kb on + strand, within DDA3937_RS02270 at 504.492 kb on + strand at 504.492 kb on + strand, within DDA3937_RS02270 at 504.492 kb on + strand, within DDA3937_RS02270 at 504.493 kb on - strand, within DDA3937_RS02270 at 504.493 kb on - strand, within DDA3937_RS02270 at 504.496 kb on + strand, within DDA3937_RS02270 at 504.497 kb on - strand, within DDA3937_RS02270 at 504.509 kb on + strand, within DDA3937_RS02270 at 504.510 kb on - strand, within DDA3937_RS02270 at 504.510 kb on - strand, within DDA3937_RS02270 at 504.510 kb on - strand, within DDA3937_RS02270 at 504.615 kb on + strand at 504.615 kb on + strand at 504.616 kb on - strand at 504.616 kb on - strand at 504.628 kb on - strand at 504.637 kb on - strand at 504.637 kb on - strand at 504.658 kb on + strand at 504.659 kb on - strand at 504.701 kb on + strand at 504.758 kb on + strand, within DDA3937_RS02275 at 504.758 kb on + strand, within DDA3937_RS02275 at 504.759 kb on - strand, within DDA3937_RS02275 at 504.799 kb on + strand, within DDA3937_RS02275 at 504.799 kb on + strand, within DDA3937_RS02275 at 504.799 kb on + strand, within DDA3937_RS02275 at 504.800 kb on - strand, within DDA3937_RS02275 at 504.800 kb on - strand, within DDA3937_RS02275 at 504.800 kb on - strand, within DDA3937_RS02275 at 504.800 kb on - strand, within DDA3937_RS02275 at 504.800 kb on - strand, within DDA3937_RS02275 at 504.833 kb on + strand, within DDA3937_RS02275 at 504.833 kb on + strand, within DDA3937_RS02275 at 504.834 kb on - strand, within DDA3937_RS02275 at 504.834 kb on - strand, within DDA3937_RS02275 at 504.961 kb on + strand, within DDA3937_RS02275 at 504.962 kb on - strand, within DDA3937_RS02275 at 504.962 kb on - strand, within DDA3937_RS02275 at 504.962 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 501,977 + DDA3937_RS02260 0.69 -0.1 501,978 - DDA3937_RS02260 0.70 +0.8 501,978 - DDA3937_RS02260 0.70 -1.0 502,150 + DDA3937_RS02260 0.86 -0.8 502,173 + DDA3937_RS02260 0.89 -2.0 502,174 - DDA3937_RS02260 0.89 +0.2 502,174 - +0.1 502,174 - DDA3937_RS02260 0.89 +0.2 502,225 + -0.3 502,225 + +0.4 502,225 + -0.0 502,225 + -1.3 502,254 - +0.1 502,261 + -0.6 502,261 + -0.0 502,261 + +0.3 502,267 + -0.0 502,267 + -0.9 502,268 - -0.2 502,268 - +0.7 502,269 + -0.0 502,270 - +0.1 502,270 - -0.6 502,270 - -0.1 502,270 - -1.5 502,294 + +0.2 502,316 + +2.2 502,316 + -0.9 502,316 + +0.0 502,316 + +0.1 502,316 + +0.2 502,316 + -0.0 502,316 + -0.3 502,316 + -0.5 502,316 + +0.4 502,316 + -1.8 502,316 + -0.3 502,316 + +0.4 502,317 - +1.2 502,317 - +0.4 502,317 - -1.6 502,317 - -0.2 502,317 - +0.7 502,317 - +0.2 502,317 - +0.0 502,317 - +0.1 502,317 - -0.5 502,317 - -0.4 502,329 - -0.1 502,360 + -0.0 502,360 + +2.0 502,360 + -0.5 502,361 - -1.8 502,361 - +0.6 502,361 - +1.2 502,374 + +1.2 502,374 + -0.3 502,374 + +0.3 502,385 - +0.3 502,385 - +1.2 502,385 - +0.2 502,385 - -0.8 502,398 - -0.7 502,398 - -0.8 502,398 - -0.8 502,398 - +0.2 502,450 + -0.5 502,450 + -0.6 502,450 + -0.0 502,463 + -0.3 502,482 - -0.1 502,487 + -0.9 502,487 + +0.2 502,487 + -0.1 502,487 + -0.2 502,487 + +0.4 502,488 - +0.2 502,489 + -0.8 502,489 + +0.5 502,489 + +0.9 502,489 + -0.4 502,489 + -0.0 502,489 + -0.7 502,490 - -0.1 502,490 - +0.7 502,490 - -0.5 502,490 - +0.7 502,490 - +0.3 502,532 + -0.2 502,532 + +0.1 502,536 - -0.3 502,586 + DDA3937_RS21795 0.37 -0.6 502,587 - DDA3937_RS21795 0.38 +0.8 502,587 - DDA3937_RS21795 0.38 +0.2 502,587 - +0.8 502,704 - -0.0 502,810 + +1.0 502,810 + +1.2 502,810 + +0.0 502,810 + -0.2 502,810 + +1.0 502,811 - +0.9 502,811 - -0.2 502,811 - -0.9 502,811 - -0.2 502,811 - -0.6 502,811 - -0.9 502,811 - -0.8 502,814 + +1.4 502,815 - +0.7 502,815 - +1.4 502,994 - DDA3937_RS02265 0.11 -0.4 503,156 - DDA3937_RS02265 0.26 -0.2 503,549 - -1.3 503,618 - DDA3937_RS02265 0.68 -0.2 503,718 - DDA3937_RS02265 0.78 -0.3 503,743 - DDA3937_RS02265 0.80 -3.2 503,773 - DDA3937_RS02265 0.83 +0.2 503,906 + -1.1 503,906 + +0.4 503,906 + +0.4 503,907 - -0.8 503,907 - +1.2 503,908 + +1.2 503,908 + +0.9 503,908 + +0.1 503,908 + +0.6 503,909 - -0.0 503,909 - +0.2 503,909 - +0.2 503,909 - +1.0 503,909 - -0.8 503,909 - -0.2 503,974 - -0.8 503,974 - +0.3 503,974 - +0.2 504,037 + DDA3937_RS02270 0.12 +0.6 504,085 + DDA3937_RS02270 0.19 -0.1 504,086 - DDA3937_RS02270 0.19 -0.5 504,087 + DDA3937_RS02270 0.20 -0.3 504,087 + DDA3937_RS02270 0.20 -0.4 504,087 + DDA3937_RS02270 0.20 -0.8 504,088 - DDA3937_RS02270 0.20 -0.1 504,088 - DDA3937_RS02270 0.20 +0.6 504,088 - DDA3937_RS02270 0.20 +1.2 504,098 + DDA3937_RS02270 0.21 +0.9 504,099 - DDA3937_RS02270 0.21 +1.2 504,099 - DDA3937_RS02270 0.21 -1.1 504,099 - DDA3937_RS02270 0.21 +0.4 504,099 - DDA3937_RS02270 0.21 +0.2 504,099 - DDA3937_RS02270 0.21 +0.1 504,106 + DDA3937_RS02270 0.22 -0.3 504,106 + DDA3937_RS02270 0.22 -0.7 504,107 - DDA3937_RS02270 0.23 +0.5 504,128 + DDA3937_RS02270 0.26 +0.4 504,129 - DDA3937_RS02270 0.26 -1.1 504,129 - DDA3937_RS02270 0.26 +0.7 504,141 + DDA3937_RS02270 0.28 +1.2 504,141 + DDA3937_RS02270 0.28 +0.9 504,142 - DDA3937_RS02270 0.28 -0.3 504,176 + DDA3937_RS02270 0.33 -0.1 504,176 + DDA3937_RS02270 0.33 -0.1 504,176 + DDA3937_RS02270 0.33 -0.8 504,176 + DDA3937_RS02270 0.33 -0.3 504,176 + DDA3937_RS02270 0.33 +1.2 504,176 + +1.2 504,176 + DDA3937_RS02270 0.33 +0.3 504,176 + DDA3937_RS02270 0.33 -0.4 504,177 - DDA3937_RS02270 0.33 +2.6 504,177 - DDA3937_RS02270 0.33 -0.6 504,177 - DDA3937_RS02270 0.33 -1.2 504,177 - DDA3937_RS02270 0.33 -0.3 504,177 - DDA3937_RS02270 0.33 -0.3 504,177 - DDA3937_RS02270 0.33 -0.1 504,177 - DDA3937_RS02270 0.33 -0.2 504,177 - DDA3937_RS02270 0.33 +0.5 504,177 - DDA3937_RS02270 0.33 -0.8 504,177 - DDA3937_RS02270 0.33 -0.6 504,181 + DDA3937_RS02270 0.34 +1.7 504,181 + DDA3937_RS02270 0.34 -0.6 504,181 + DDA3937_RS02270 0.34 +0.1 504,182 - DDA3937_RS02270 0.34 +0.5 504,182 - DDA3937_RS02270 0.34 -0.1 504,184 + DDA3937_RS02270 0.34 +0.0 504,184 + DDA3937_RS02270 0.34 +0.5 504,185 - DDA3937_RS02270 0.35 +0.7 504,185 - DDA3937_RS02270 0.35 +0.1 504,185 - DDA3937_RS02270 0.35 +1.7 504,185 - DDA3937_RS02270 0.35 -0.2 504,244 + DDA3937_RS02270 0.44 +0.0 504,244 + -1.3 504,276 + DDA3937_RS02270 0.48 -0.0 504,276 + +1.2 504,276 + DDA3937_RS02270 0.48 +2.8 504,276 + DDA3937_RS02270 0.48 -0.1 504,277 - DDA3937_RS02270 0.49 +0.2 504,277 - DDA3937_RS02270 0.49 +1.0 504,285 + DDA3937_RS02270 0.50 -1.1 504,286 - DDA3937_RS02270 0.50 -0.8 504,286 - DDA3937_RS02270 0.50 -0.0 504,328 + DDA3937_RS02270 0.56 -0.7 504,329 - DDA3937_RS02270 0.57 +0.1 504,445 - DDA3937_RS02270 0.74 +0.6 504,468 + DDA3937_RS02270 0.78 -0.8 504,468 + DDA3937_RS02270 0.78 +0.7 504,474 + DDA3937_RS02270 0.79 +0.4 504,486 + DDA3937_RS02270 0.81 -0.0 504,492 + DDA3937_RS02270 0.81 -0.1 504,492 + DDA3937_RS02270 0.81 +1.1 504,492 + +0.8 504,492 + DDA3937_RS02270 0.81 -0.1 504,492 + DDA3937_RS02270 0.81 +0.0 504,493 - DDA3937_RS02270 0.82 +0.2 504,493 - DDA3937_RS02270 0.82 +1.1 504,496 + DDA3937_RS02270 0.82 -1.1 504,497 - DDA3937_RS02270 0.82 +0.8 504,509 + DDA3937_RS02270 0.84 -0.3 504,510 - DDA3937_RS02270 0.84 +0.7 504,510 - DDA3937_RS02270 0.84 +0.6 504,510 - DDA3937_RS02270 0.84 -0.1 504,615 + -0.2 504,615 + -1.1 504,616 - +0.2 504,616 - -0.2 504,628 - -1.3 504,637 - +1.1 504,637 - +0.2 504,658 + +0.3 504,659 - +0.3 504,701 + +0.5 504,758 + DDA3937_RS02275 0.20 +0.5 504,758 + DDA3937_RS02275 0.20 -0.6 504,759 - DDA3937_RS02275 0.20 +0.4 504,799 + DDA3937_RS02275 0.28 +0.5 504,799 + DDA3937_RS02275 0.28 -1.6 504,799 + DDA3937_RS02275 0.28 +0.9 504,800 - DDA3937_RS02275 0.28 +0.1 504,800 - DDA3937_RS02275 0.28 +0.2 504,800 - DDA3937_RS02275 0.28 +0.0 504,800 - DDA3937_RS02275 0.28 +1.2 504,800 - DDA3937_RS02275 0.28 -0.5 504,833 + DDA3937_RS02275 0.35 -0.1 504,833 + DDA3937_RS02275 0.35 +0.8 504,834 - DDA3937_RS02275 0.35 +0.4 504,834 - DDA3937_RS02275 0.35 -0.9 504,961 + DDA3937_RS02275 0.60 -0.0 504,962 - DDA3937_RS02275 0.61 -0.5 504,962 - DDA3937_RS02275 0.61 -1.3 504,962 - -0.2
Or see this region's nucleotide sequence