Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02205 and DDA3937_RS02210 are separated by 71 nucleotides DDA3937_RS02210 and DDA3937_RS02215 are separated by 113 nucleotides DDA3937_RS02215 and DDA3937_RS02220 are separated by 70 nucleotides
DDA3937_RS02205: DDA3937_RS02205 - type-1Aa cytolytic delta-endotoxin, at 489,535 to 490,194
_RS02205
DDA3937_RS02210: DDA3937_RS02210 - type-1Ba cytolytic delta-endotoxin, at 490,266 to 490,877
_RS02210
DDA3937_RS02215: DDA3937_RS02215 - type-2Aa cytolytic delta-endotoxin, at 490,991 to 491,590
_RS02215
DDA3937_RS02220: DDA3937_RS02220 - delta-endotoxin CytB, at 491,661 to 492,296
_RS02220
Position (kb) 490
491
492 Strain fitness (log2 ratio) -2
-1
0
1
2 at 490.038 kb on + strand, within DDA3937_RS02205 at 490.038 kb on + strand, within DDA3937_RS02205 at 490.039 kb on - strand, within DDA3937_RS02205 at 490.040 kb on + strand, within DDA3937_RS02205 at 490.040 kb on + strand, within DDA3937_RS02205 at 490.040 kb on + strand, within DDA3937_RS02205 at 490.174 kb on + strand at 490.174 kb on + strand at 490.174 kb on + strand at 490.174 kb on + strand at 490.175 kb on - strand at 490.190 kb on + strand at 490.191 kb on - strand at 490.191 kb on - strand at 490.191 kb on - strand at 490.191 kb on - strand at 490.191 kb on - strand at 490.197 kb on + strand at 490.253 kb on + strand at 490.356 kb on + strand, within DDA3937_RS02210 at 490.357 kb on - strand, within DDA3937_RS02210 at 490.391 kb on + strand, within DDA3937_RS02210 at 490.457 kb on - strand, within DDA3937_RS02210 at 490.457 kb on - strand, within DDA3937_RS02210 at 490.503 kb on - strand at 490.554 kb on + strand, within DDA3937_RS02210 at 490.555 kb on - strand, within DDA3937_RS02210 at 490.559 kb on + strand, within DDA3937_RS02210 at 490.570 kb on + strand, within DDA3937_RS02210 at 490.570 kb on + strand, within DDA3937_RS02210 at 490.570 kb on + strand, within DDA3937_RS02210 at 490.571 kb on - strand, within DDA3937_RS02210 at 490.571 kb on - strand, within DDA3937_RS02210 at 490.575 kb on - strand, within DDA3937_RS02210 at 490.584 kb on - strand, within DDA3937_RS02210 at 490.587 kb on - strand, within DDA3937_RS02210 at 490.602 kb on + strand, within DDA3937_RS02210 at 490.603 kb on - strand, within DDA3937_RS02210 at 490.649 kb on + strand, within DDA3937_RS02210 at 490.692 kb on + strand, within DDA3937_RS02210 at 490.692 kb on + strand, within DDA3937_RS02210 at 490.693 kb on - strand at 490.738 kb on - strand, within DDA3937_RS02210 at 490.748 kb on + strand, within DDA3937_RS02210 at 490.786 kb on - strand, within DDA3937_RS02210 at 490.798 kb on + strand, within DDA3937_RS02210 at 490.798 kb on + strand, within DDA3937_RS02210 at 490.798 kb on + strand, within DDA3937_RS02210 at 490.801 kb on + strand, within DDA3937_RS02210 at 490.801 kb on + strand, within DDA3937_RS02210 at 490.802 kb on - strand, within DDA3937_RS02210 at 490.844 kb on + strand at 490.845 kb on - strand at 490.848 kb on - strand at 490.848 kb on - strand at 490.894 kb on + strand at 490.915 kb on + strand at 490.916 kb on - strand at 490.930 kb on + strand at 490.945 kb on - strand at 490.962 kb on + strand at 490.962 kb on + strand at 490.976 kb on - strand at 490.993 kb on - strand at 491.023 kb on + strand at 491.048 kb on - strand at 491.095 kb on + strand, within DDA3937_RS02215 at 491.096 kb on - strand, within DDA3937_RS02215 at 491.096 kb on - strand, within DDA3937_RS02215 at 491.096 kb on - strand, within DDA3937_RS02215 at 491.098 kb on + strand, within DDA3937_RS02215 at 491.098 kb on + strand, within DDA3937_RS02215 at 491.101 kb on + strand, within DDA3937_RS02215 at 491.108 kb on + strand, within DDA3937_RS02215 at 491.109 kb on - strand, within DDA3937_RS02215 at 491.117 kb on + strand, within DDA3937_RS02215 at 491.170 kb on + strand, within DDA3937_RS02215 at 491.171 kb on - strand, within DDA3937_RS02215 at 491.173 kb on + strand, within DDA3937_RS02215 at 491.173 kb on + strand, within DDA3937_RS02215 at 491.176 kb on - strand, within DDA3937_RS02215 at 491.176 kb on - strand, within DDA3937_RS02215 at 491.176 kb on - strand, within DDA3937_RS02215 at 491.176 kb on - strand, within DDA3937_RS02215 at 491.176 kb on - strand, within DDA3937_RS02215 at 491.191 kb on + strand, within DDA3937_RS02215 at 491.216 kb on - strand, within DDA3937_RS02215 at 491.220 kb on + strand, within DDA3937_RS02215 at 491.220 kb on + strand, within DDA3937_RS02215 at 491.220 kb on + strand, within DDA3937_RS02215 at 491.220 kb on + strand, within DDA3937_RS02215 at 491.221 kb on - strand, within DDA3937_RS02215 at 491.221 kb on - strand, within DDA3937_RS02215 at 491.221 kb on - strand, within DDA3937_RS02215 at 491.221 kb on - strand, within DDA3937_RS02215 at 491.375 kb on + strand, within DDA3937_RS02215 at 491.375 kb on + strand, within DDA3937_RS02215 at 491.375 kb on + strand, within DDA3937_RS02215 at 491.376 kb on - strand, within DDA3937_RS02215 at 491.488 kb on + strand, within DDA3937_RS02215 at 491.531 kb on + strand at 491.560 kb on + strand at 491.581 kb on + strand at 491.581 kb on + strand at 491.581 kb on + strand at 491.601 kb on + strand at 491.602 kb on - strand at 491.602 kb on - strand at 491.602 kb on - strand at 491.621 kb on + strand at 491.624 kb on + strand at 491.625 kb on - strand at 491.625 kb on - strand at 491.627 kb on + strand at 491.710 kb on + strand at 491.711 kb on - strand at 491.714 kb on + strand at 491.714 kb on + strand at 491.714 kb on + strand at 491.714 kb on + strand at 491.715 kb on - strand at 491.715 kb on - strand at 491.715 kb on - strand at 491.784 kb on - strand, within DDA3937_RS02220 at 491.843 kb on - strand, within DDA3937_RS02220 at 491.843 kb on - strand, within DDA3937_RS02220 at 491.846 kb on + strand, within DDA3937_RS02220 at 491.846 kb on + strand, within DDA3937_RS02220 at 491.846 kb on + strand, within DDA3937_RS02220 at 491.847 kb on - strand, within DDA3937_RS02220 at 491.847 kb on - strand, within DDA3937_RS02220 at 491.847 kb on - strand, within DDA3937_RS02220 at 491.848 kb on + strand, within DDA3937_RS02220 at 491.848 kb on + strand, within DDA3937_RS02220 at 491.848 kb on + strand at 491.848 kb on + strand, within DDA3937_RS02220 at 491.848 kb on + strand, within DDA3937_RS02220 at 491.849 kb on - strand, within DDA3937_RS02220 at 491.849 kb on - strand, within DDA3937_RS02220 at 491.849 kb on - strand, within DDA3937_RS02220 at 491.849 kb on - strand, within DDA3937_RS02220 at 491.849 kb on - strand at 491.918 kb on + strand, within DDA3937_RS02220 at 491.919 kb on - strand, within DDA3937_RS02220 at 491.953 kb on + strand, within DDA3937_RS02220 at 492.008 kb on + strand, within DDA3937_RS02220 at 492.075 kb on + strand, within DDA3937_RS02220 at 492.163 kb on - strand, within DDA3937_RS02220 at 492.194 kb on - strand, within DDA3937_RS02220 at 492.194 kb on - strand, within DDA3937_RS02220 at 492.214 kb on - strand, within DDA3937_RS02220 at 492.374 kb on + strand at 492.472 kb on - strand at 492.473 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 490,038 + DDA3937_RS02205 0.76 +0.7 490,038 + DDA3937_RS02205 0.76 -1.1 490,039 - DDA3937_RS02205 0.76 +0.2 490,040 + DDA3937_RS02205 0.77 -0.3 490,040 + DDA3937_RS02205 0.77 +0.2 490,040 + DDA3937_RS02205 0.77 -0.2 490,174 + +0.5 490,174 + -0.7 490,174 + +1.2 490,174 + +0.3 490,175 - -0.1 490,190 + -0.5 490,191 - -0.1 490,191 - -0.5 490,191 - -0.3 490,191 - +0.1 490,191 - -0.2 490,197 + -0.0 490,253 + +0.2 490,356 + DDA3937_RS02210 0.15 -0.9 490,357 - DDA3937_RS02210 0.15 -1.8 490,391 + DDA3937_RS02210 0.20 -0.7 490,457 - DDA3937_RS02210 0.31 -0.9 490,457 - DDA3937_RS02210 0.31 -1.3 490,503 - -2.1 490,554 + DDA3937_RS02210 0.47 -0.7 490,555 - DDA3937_RS02210 0.47 +0.2 490,559 + DDA3937_RS02210 0.48 -1.3 490,570 + DDA3937_RS02210 0.50 +0.2 490,570 + DDA3937_RS02210 0.50 -0.2 490,570 + DDA3937_RS02210 0.50 -2.3 490,571 - DDA3937_RS02210 0.50 +0.3 490,571 - DDA3937_RS02210 0.50 -1.8 490,575 - DDA3937_RS02210 0.50 -1.1 490,584 - DDA3937_RS02210 0.52 +0.2 490,587 - DDA3937_RS02210 0.52 +0.2 490,602 + DDA3937_RS02210 0.55 +1.6 490,603 - DDA3937_RS02210 0.55 -0.8 490,649 + DDA3937_RS02210 0.63 -1.5 490,692 + DDA3937_RS02210 0.70 +0.2 490,692 + DDA3937_RS02210 0.70 -0.6 490,693 - -0.3 490,738 - DDA3937_RS02210 0.77 +1.2 490,748 + DDA3937_RS02210 0.79 +0.4 490,786 - DDA3937_RS02210 0.85 -1.3 490,798 + DDA3937_RS02210 0.87 -0.3 490,798 + DDA3937_RS02210 0.87 +1.2 490,798 + DDA3937_RS02210 0.87 -0.6 490,801 + DDA3937_RS02210 0.87 -0.3 490,801 + DDA3937_RS02210 0.87 +0.0 490,802 - DDA3937_RS02210 0.88 +0.0 490,844 + +0.5 490,845 - +0.9 490,848 - +1.0 490,848 - -1.3 490,894 + +0.2 490,915 + -1.1 490,916 - +0.2 490,930 + -1.3 490,945 - -0.3 490,962 + -1.6 490,962 + -1.3 490,976 - +0.2 490,993 - -0.6 491,023 + -0.3 491,048 - +1.2 491,095 + DDA3937_RS02215 0.17 +0.6 491,096 - DDA3937_RS02215 0.17 +1.8 491,096 - DDA3937_RS02215 0.17 +0.2 491,096 - DDA3937_RS02215 0.17 -0.4 491,098 + DDA3937_RS02215 0.18 -0.9 491,098 + DDA3937_RS02215 0.18 +0.3 491,101 + DDA3937_RS02215 0.18 +0.7 491,108 + DDA3937_RS02215 0.20 +0.7 491,109 - DDA3937_RS02215 0.20 +0.6 491,117 + DDA3937_RS02215 0.21 -0.6 491,170 + DDA3937_RS02215 0.30 -1.6 491,171 - DDA3937_RS02215 0.30 -0.3 491,173 + DDA3937_RS02215 0.30 -0.7 491,173 + DDA3937_RS02215 0.30 -0.0 491,176 - DDA3937_RS02215 0.31 -0.7 491,176 - DDA3937_RS02215 0.31 -0.8 491,176 - DDA3937_RS02215 0.31 -1.0 491,176 - DDA3937_RS02215 0.31 -0.2 491,176 - DDA3937_RS02215 0.31 -1.3 491,191 + DDA3937_RS02215 0.33 -0.8 491,216 - DDA3937_RS02215 0.38 -0.2 491,220 + DDA3937_RS02215 0.38 -0.1 491,220 + DDA3937_RS02215 0.38 +1.7 491,220 + DDA3937_RS02215 0.38 -0.5 491,220 + DDA3937_RS02215 0.38 -0.3 491,221 - DDA3937_RS02215 0.38 -0.3 491,221 - DDA3937_RS02215 0.38 -1.0 491,221 - DDA3937_RS02215 0.38 -0.1 491,221 - DDA3937_RS02215 0.38 -0.3 491,375 + DDA3937_RS02215 0.64 -0.1 491,375 + DDA3937_RS02215 0.64 +0.4 491,375 + DDA3937_RS02215 0.64 -1.8 491,376 - DDA3937_RS02215 0.64 +0.9 491,488 + DDA3937_RS02215 0.83 -1.2 491,531 + -0.1 491,560 + +0.1 491,581 + -1.0 491,581 + +0.2 491,581 + +0.2 491,601 + -2.3 491,602 - -1.0 491,602 - -0.6 491,602 - +0.5 491,621 + -0.6 491,624 + -1.3 491,625 - +0.4 491,625 - -0.2 491,627 + +0.8 491,710 + +0.6 491,711 - +0.1 491,714 + +0.7 491,714 + +1.8 491,714 + -0.3 491,714 + -0.8 491,715 - -1.2 491,715 - -0.3 491,715 - +0.0 491,784 - DDA3937_RS02220 0.19 -0.3 491,843 - DDA3937_RS02220 0.29 -0.8 491,843 - DDA3937_RS02220 0.29 -0.6 491,846 + DDA3937_RS02220 0.29 -2.3 491,846 + DDA3937_RS02220 0.29 -0.6 491,846 + DDA3937_RS02220 0.29 +0.3 491,847 - DDA3937_RS02220 0.29 +0.2 491,847 - DDA3937_RS02220 0.29 +0.5 491,847 - DDA3937_RS02220 0.29 +0.0 491,848 + DDA3937_RS02220 0.29 -0.9 491,848 + DDA3937_RS02220 0.29 +0.5 491,848 + +1.2 491,848 + DDA3937_RS02220 0.29 -0.7 491,848 + DDA3937_RS02220 0.29 -2.5 491,849 - DDA3937_RS02220 0.30 -0.1 491,849 - DDA3937_RS02220 0.30 +1.0 491,849 - DDA3937_RS02220 0.30 -0.2 491,849 - DDA3937_RS02220 0.30 -1.2 491,849 - -0.8 491,918 + DDA3937_RS02220 0.40 -0.2 491,919 - DDA3937_RS02220 0.41 -0.1 491,953 + DDA3937_RS02220 0.46 +0.7 492,008 + DDA3937_RS02220 0.55 -1.6 492,075 + DDA3937_RS02220 0.65 -0.3 492,163 - DDA3937_RS02220 0.79 -1.0 492,194 - DDA3937_RS02220 0.84 -0.3 492,194 - DDA3937_RS02220 0.84 -1.1 492,214 - DDA3937_RS02220 0.87 -0.8 492,374 + -0.3 492,472 - +0.5 492,473 + -0.0
Or see this region's nucleotide sequence