Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02195 and DDA3937_RS02200 are separated by 10 nucleotides DDA3937_RS02200 and DDA3937_RS02205 are separated by 102 nucleotides DDA3937_RS02205 and DDA3937_RS02210 are separated by 71 nucleotides DDA3937_RS02210 and DDA3937_RS02215 are separated by 113 nucleotides
DDA3937_RS02195: DDA3937_RS02195 - FGGY-family carbohydrate kinase, at 487,113 to 488,624
_RS02195
DDA3937_RS02200: DDA3937_RS02200 - SDR family oxidoreductase, at 488,635 to 489,432
_RS02200
DDA3937_RS02205: DDA3937_RS02205 - type-1Aa cytolytic delta-endotoxin, at 489,535 to 490,194
_RS02205
DDA3937_RS02210: DDA3937_RS02210 - type-1Ba cytolytic delta-endotoxin, at 490,266 to 490,877
_RS02210
DDA3937_RS02215: DDA3937_RS02215 - type-2Aa cytolytic delta-endotoxin, at 490,991 to 491,590
_RS02215
Position (kb) 489
490
491 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 488.651 kb on - strand at 488.655 kb on + strand at 488.655 kb on + strand at 488.655 kb on + strand at 488.655 kb on + strand at 488.655 kb on + strand at 488.783 kb on + strand, within DDA3937_RS02200 at 488.783 kb on + strand, within DDA3937_RS02200 at 488.783 kb on + strand, within DDA3937_RS02200 at 488.783 kb on + strand, within DDA3937_RS02200 at 488.784 kb on - strand, within DDA3937_RS02200 at 488.784 kb on - strand, within DDA3937_RS02200 at 488.784 kb on - strand, within DDA3937_RS02200 at 488.847 kb on - strand, within DDA3937_RS02200 at 488.847 kb on - strand, within DDA3937_RS02200 at 488.857 kb on + strand, within DDA3937_RS02200 at 488.858 kb on - strand, within DDA3937_RS02200 at 488.858 kb on - strand, within DDA3937_RS02200 at 488.858 kb on - strand, within DDA3937_RS02200 at 488.929 kb on + strand, within DDA3937_RS02200 at 488.930 kb on - strand, within DDA3937_RS02200 at 488.979 kb on + strand, within DDA3937_RS02200 at 488.990 kb on + strand, within DDA3937_RS02200 at 488.991 kb on - strand, within DDA3937_RS02200 at 489.019 kb on + strand, within DDA3937_RS02200 at 489.020 kb on - strand, within DDA3937_RS02200 at 489.020 kb on - strand, within DDA3937_RS02200 at 489.020 kb on - strand at 489.051 kb on + strand, within DDA3937_RS02200 at 489.051 kb on + strand, within DDA3937_RS02200 at 489.052 kb on - strand, within DDA3937_RS02200 at 489.054 kb on + strand, within DDA3937_RS02200 at 489.055 kb on - strand, within DDA3937_RS02200 at 489.055 kb on - strand, within DDA3937_RS02200 at 489.084 kb on + strand, within DDA3937_RS02200 at 489.084 kb on + strand, within DDA3937_RS02200 at 489.085 kb on - strand, within DDA3937_RS02200 at 489.085 kb on - strand, within DDA3937_RS02200 at 489.085 kb on - strand, within DDA3937_RS02200 at 489.085 kb on - strand, within DDA3937_RS02200 at 489.088 kb on + strand, within DDA3937_RS02200 at 489.088 kb on + strand, within DDA3937_RS02200 at 489.088 kb on + strand, within DDA3937_RS02200 at 489.088 kb on + strand, within DDA3937_RS02200 at 489.088 kb on + strand, within DDA3937_RS02200 at 489.088 kb on + strand, within DDA3937_RS02200 at 489.089 kb on - strand at 489.089 kb on - strand, within DDA3937_RS02200 at 489.089 kb on - strand, within DDA3937_RS02200 at 489.090 kb on + strand, within DDA3937_RS02200 at 489.091 kb on - strand, within DDA3937_RS02200 at 489.220 kb on + strand, within DDA3937_RS02200 at 489.300 kb on - strand, within DDA3937_RS02200 at 489.382 kb on + strand at 489.383 kb on - strand at 489.383 kb on - strand at 489.383 kb on - strand at 489.402 kb on + strand at 489.403 kb on - strand at 489.544 kb on + strand at 489.545 kb on - strand at 489.584 kb on + strand at 489.584 kb on + strand at 489.584 kb on + strand at 489.584 kb on + strand at 489.584 kb on + strand at 489.585 kb on - strand at 489.585 kb on - strand at 489.587 kb on + strand at 489.587 kb on + strand at 489.587 kb on + strand at 489.588 kb on - strand at 489.588 kb on - strand at 489.588 kb on - strand at 489.588 kb on - strand at 489.588 kb on - strand at 489.588 kb on - strand at 489.588 kb on - strand at 489.588 kb on - strand at 489.588 kb on - strand at 489.610 kb on - strand, within DDA3937_RS02205 at 489.700 kb on + strand, within DDA3937_RS02205 at 489.701 kb on - strand, within DDA3937_RS02205 at 489.701 kb on - strand, within DDA3937_RS02205 at 489.701 kb on - strand, within DDA3937_RS02205 at 489.705 kb on + strand, within DDA3937_RS02205 at 489.713 kb on + strand, within DDA3937_RS02205 at 489.713 kb on + strand, within DDA3937_RS02205 at 489.713 kb on + strand, within DDA3937_RS02205 at 489.714 kb on - strand, within DDA3937_RS02205 at 489.714 kb on - strand, within DDA3937_RS02205 at 489.714 kb on - strand, within DDA3937_RS02205 at 489.720 kb on + strand, within DDA3937_RS02205 at 489.721 kb on - strand at 489.795 kb on + strand, within DDA3937_RS02205 at 489.796 kb on - strand, within DDA3937_RS02205 at 489.796 kb on - strand, within DDA3937_RS02205 at 489.858 kb on + strand, within DDA3937_RS02205 at 489.859 kb on - strand, within DDA3937_RS02205 at 489.859 kb on - strand, within DDA3937_RS02205 at 489.929 kb on - strand, within DDA3937_RS02205 at 489.958 kb on - strand, within DDA3937_RS02205 at 489.958 kb on - strand, within DDA3937_RS02205 at 489.958 kb on - strand, within DDA3937_RS02205 at 490.038 kb on + strand, within DDA3937_RS02205 at 490.038 kb on + strand, within DDA3937_RS02205 at 490.039 kb on - strand, within DDA3937_RS02205 at 490.040 kb on + strand, within DDA3937_RS02205 at 490.040 kb on + strand, within DDA3937_RS02205 at 490.040 kb on + strand, within DDA3937_RS02205 at 490.174 kb on + strand at 490.174 kb on + strand at 490.174 kb on + strand at 490.174 kb on + strand at 490.175 kb on - strand at 490.190 kb on + strand at 490.191 kb on - strand at 490.191 kb on - strand at 490.191 kb on - strand at 490.191 kb on - strand at 490.191 kb on - strand at 490.197 kb on + strand at 490.253 kb on + strand at 490.356 kb on + strand, within DDA3937_RS02210 at 490.357 kb on - strand, within DDA3937_RS02210 at 490.391 kb on + strand, within DDA3937_RS02210 at 490.457 kb on - strand, within DDA3937_RS02210 at 490.457 kb on - strand, within DDA3937_RS02210 at 490.503 kb on - strand at 490.554 kb on + strand, within DDA3937_RS02210 at 490.555 kb on - strand, within DDA3937_RS02210 at 490.559 kb on + strand, within DDA3937_RS02210 at 490.570 kb on + strand, within DDA3937_RS02210 at 490.570 kb on + strand, within DDA3937_RS02210 at 490.570 kb on + strand, within DDA3937_RS02210 at 490.571 kb on - strand, within DDA3937_RS02210 at 490.571 kb on - strand, within DDA3937_RS02210 at 490.575 kb on - strand, within DDA3937_RS02210 at 490.584 kb on - strand, within DDA3937_RS02210 at 490.587 kb on - strand, within DDA3937_RS02210 at 490.602 kb on + strand, within DDA3937_RS02210 at 490.603 kb on - strand, within DDA3937_RS02210 at 490.649 kb on + strand, within DDA3937_RS02210 at 490.692 kb on + strand, within DDA3937_RS02210 at 490.692 kb on + strand, within DDA3937_RS02210 at 490.693 kb on - strand at 490.738 kb on - strand, within DDA3937_RS02210 at 490.748 kb on + strand, within DDA3937_RS02210 at 490.786 kb on - strand, within DDA3937_RS02210 at 490.798 kb on + strand, within DDA3937_RS02210 at 490.798 kb on + strand, within DDA3937_RS02210 at 490.798 kb on + strand, within DDA3937_RS02210 at 490.801 kb on + strand, within DDA3937_RS02210 at 490.801 kb on + strand, within DDA3937_RS02210 at 490.802 kb on - strand, within DDA3937_RS02210 at 490.844 kb on + strand at 490.845 kb on - strand at 490.848 kb on - strand at 490.848 kb on - strand at 490.894 kb on + strand at 490.915 kb on + strand at 490.916 kb on - strand at 490.930 kb on + strand at 490.945 kb on - strand at 490.962 kb on + strand at 490.962 kb on + strand at 490.976 kb on - strand at 490.993 kb on - strand at 491.023 kb on + strand at 491.048 kb on - strand at 491.095 kb on + strand, within DDA3937_RS02215 at 491.096 kb on - strand, within DDA3937_RS02215 at 491.096 kb on - strand, within DDA3937_RS02215 at 491.096 kb on - strand, within DDA3937_RS02215 at 491.098 kb on + strand, within DDA3937_RS02215 at 491.098 kb on + strand, within DDA3937_RS02215 at 491.101 kb on + strand, within DDA3937_RS02215 at 491.108 kb on + strand, within DDA3937_RS02215 at 491.109 kb on - strand, within DDA3937_RS02215 at 491.117 kb on + strand, within DDA3937_RS02215 at 491.170 kb on + strand, within DDA3937_RS02215 at 491.171 kb on - strand, within DDA3937_RS02215 at 491.173 kb on + strand, within DDA3937_RS02215 at 491.173 kb on + strand, within DDA3937_RS02215 at 491.176 kb on - strand, within DDA3937_RS02215 at 491.176 kb on - strand, within DDA3937_RS02215 at 491.176 kb on - strand, within DDA3937_RS02215 at 491.176 kb on - strand, within DDA3937_RS02215 at 491.176 kb on - strand, within DDA3937_RS02215 at 491.191 kb on + strand, within DDA3937_RS02215
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 488,651 - -0.4 488,655 + +0.2 488,655 + +0.1 488,655 + +0.2 488,655 + +0.3 488,655 + +1.1 488,783 + DDA3937_RS02200 0.19 +0.0 488,783 + DDA3937_RS02200 0.19 -0.0 488,783 + DDA3937_RS02200 0.19 +0.9 488,783 + DDA3937_RS02200 0.19 -0.8 488,784 - DDA3937_RS02200 0.19 -0.0 488,784 - DDA3937_RS02200 0.19 +0.2 488,784 - DDA3937_RS02200 0.19 -0.3 488,847 - DDA3937_RS02200 0.27 +0.0 488,847 - DDA3937_RS02200 0.27 +0.5 488,857 + DDA3937_RS02200 0.28 +0.8 488,858 - DDA3937_RS02200 0.28 +0.3 488,858 - DDA3937_RS02200 0.28 -0.1 488,858 - DDA3937_RS02200 0.28 -0.0 488,929 + DDA3937_RS02200 0.37 +0.5 488,930 - DDA3937_RS02200 0.37 -0.2 488,979 + DDA3937_RS02200 0.43 +1.3 488,990 + DDA3937_RS02200 0.44 +0.4 488,991 - DDA3937_RS02200 0.45 +0.6 489,019 + DDA3937_RS02200 0.48 -0.0 489,020 - DDA3937_RS02200 0.48 -0.9 489,020 - DDA3937_RS02200 0.48 -0.2 489,020 - -1.9 489,051 + DDA3937_RS02200 0.52 -0.6 489,051 + DDA3937_RS02200 0.52 -0.1 489,052 - DDA3937_RS02200 0.52 -1.5 489,054 + DDA3937_RS02200 0.53 +0.4 489,055 - DDA3937_RS02200 0.53 +0.0 489,055 - DDA3937_RS02200 0.53 -0.1 489,084 + DDA3937_RS02200 0.56 +0.8 489,084 + DDA3937_RS02200 0.56 +0.1 489,085 - DDA3937_RS02200 0.56 -1.2 489,085 - DDA3937_RS02200 0.56 +0.6 489,085 - DDA3937_RS02200 0.56 -0.3 489,085 - DDA3937_RS02200 0.56 -1.9 489,088 + DDA3937_RS02200 0.57 -0.1 489,088 + DDA3937_RS02200 0.57 +0.0 489,088 + DDA3937_RS02200 0.57 -0.9 489,088 + DDA3937_RS02200 0.57 -1.0 489,088 + DDA3937_RS02200 0.57 -0.0 489,088 + DDA3937_RS02200 0.57 +0.4 489,089 - +0.2 489,089 - DDA3937_RS02200 0.57 -0.2 489,089 - DDA3937_RS02200 0.57 +0.1 489,090 + DDA3937_RS02200 0.57 +0.5 489,091 - DDA3937_RS02200 0.57 -0.5 489,220 + DDA3937_RS02200 0.73 -0.3 489,300 - DDA3937_RS02200 0.83 +0.4 489,382 + -0.6 489,383 - +1.3 489,383 - +0.4 489,383 - -0.9 489,402 + -0.8 489,403 - +0.8 489,544 + -0.0 489,545 - +0.3 489,584 + -0.9 489,584 + -0.8 489,584 + +0.9 489,584 + -0.3 489,584 + -2.8 489,585 - +0.7 489,585 - +0.6 489,587 + -0.4 489,587 + -0.3 489,587 + +1.0 489,588 - -0.6 489,588 - -0.0 489,588 - +0.7 489,588 - +0.2 489,588 - -0.4 489,588 - -0.6 489,588 - +0.0 489,588 - +0.7 489,588 - -0.3 489,610 - DDA3937_RS02205 0.11 -0.2 489,700 + DDA3937_RS02205 0.25 +0.7 489,701 - DDA3937_RS02205 0.25 -0.6 489,701 - DDA3937_RS02205 0.25 -0.4 489,701 - DDA3937_RS02205 0.25 -0.8 489,705 + DDA3937_RS02205 0.26 -1.3 489,713 + DDA3937_RS02205 0.27 +1.5 489,713 + DDA3937_RS02205 0.27 -0.4 489,713 + DDA3937_RS02205 0.27 -0.4 489,714 - DDA3937_RS02205 0.27 -2.8 489,714 - DDA3937_RS02205 0.27 -0.2 489,714 - DDA3937_RS02205 0.27 +0.8 489,720 + DDA3937_RS02205 0.28 +0.2 489,721 - +0.4 489,795 + DDA3937_RS02205 0.39 -0.9 489,796 - DDA3937_RS02205 0.40 -0.1 489,796 - DDA3937_RS02205 0.40 -0.3 489,858 + DDA3937_RS02205 0.49 -0.2 489,859 - DDA3937_RS02205 0.49 +0.5 489,859 - DDA3937_RS02205 0.49 -0.3 489,929 - DDA3937_RS02205 0.60 -0.3 489,958 - DDA3937_RS02205 0.64 -0.5 489,958 - DDA3937_RS02205 0.64 -0.5 489,958 - DDA3937_RS02205 0.64 +0.0 490,038 + DDA3937_RS02205 0.76 +0.7 490,038 + DDA3937_RS02205 0.76 -1.1 490,039 - DDA3937_RS02205 0.76 +0.2 490,040 + DDA3937_RS02205 0.77 -0.3 490,040 + DDA3937_RS02205 0.77 +0.2 490,040 + DDA3937_RS02205 0.77 -0.2 490,174 + +0.5 490,174 + -0.7 490,174 + +1.2 490,174 + +0.3 490,175 - -0.1 490,190 + -0.5 490,191 - -0.1 490,191 - -0.5 490,191 - -0.3 490,191 - +0.1 490,191 - -0.2 490,197 + -0.0 490,253 + +0.2 490,356 + DDA3937_RS02210 0.15 -0.9 490,357 - DDA3937_RS02210 0.15 -1.8 490,391 + DDA3937_RS02210 0.20 -0.7 490,457 - DDA3937_RS02210 0.31 -0.9 490,457 - DDA3937_RS02210 0.31 -1.3 490,503 - -2.1 490,554 + DDA3937_RS02210 0.47 -0.7 490,555 - DDA3937_RS02210 0.47 +0.2 490,559 + DDA3937_RS02210 0.48 -1.3 490,570 + DDA3937_RS02210 0.50 +0.2 490,570 + DDA3937_RS02210 0.50 -0.2 490,570 + DDA3937_RS02210 0.50 -2.3 490,571 - DDA3937_RS02210 0.50 +0.3 490,571 - DDA3937_RS02210 0.50 -1.8 490,575 - DDA3937_RS02210 0.50 -1.1 490,584 - DDA3937_RS02210 0.52 +0.2 490,587 - DDA3937_RS02210 0.52 +0.2 490,602 + DDA3937_RS02210 0.55 +1.6 490,603 - DDA3937_RS02210 0.55 -0.8 490,649 + DDA3937_RS02210 0.63 -1.5 490,692 + DDA3937_RS02210 0.70 +0.2 490,692 + DDA3937_RS02210 0.70 -0.6 490,693 - -0.3 490,738 - DDA3937_RS02210 0.77 +1.2 490,748 + DDA3937_RS02210 0.79 +0.4 490,786 - DDA3937_RS02210 0.85 -1.3 490,798 + DDA3937_RS02210 0.87 -0.3 490,798 + DDA3937_RS02210 0.87 +1.2 490,798 + DDA3937_RS02210 0.87 -0.6 490,801 + DDA3937_RS02210 0.87 -0.3 490,801 + DDA3937_RS02210 0.87 +0.0 490,802 - DDA3937_RS02210 0.88 +0.0 490,844 + +0.5 490,845 - +0.9 490,848 - +1.0 490,848 - -1.3 490,894 + +0.2 490,915 + -1.1 490,916 - +0.2 490,930 + -1.3 490,945 - -0.3 490,962 + -1.6 490,962 + -1.3 490,976 - +0.2 490,993 - -0.6 491,023 + -0.3 491,048 - +1.2 491,095 + DDA3937_RS02215 0.17 +0.6 491,096 - DDA3937_RS02215 0.17 +1.8 491,096 - DDA3937_RS02215 0.17 +0.2 491,096 - DDA3937_RS02215 0.17 -0.4 491,098 + DDA3937_RS02215 0.18 -0.9 491,098 + DDA3937_RS02215 0.18 +0.3 491,101 + DDA3937_RS02215 0.18 +0.7 491,108 + DDA3937_RS02215 0.20 +0.7 491,109 - DDA3937_RS02215 0.20 +0.6 491,117 + DDA3937_RS02215 0.21 -0.6 491,170 + DDA3937_RS02215 0.30 -1.6 491,171 - DDA3937_RS02215 0.30 -0.3 491,173 + DDA3937_RS02215 0.30 -0.7 491,173 + DDA3937_RS02215 0.30 -0.0 491,176 - DDA3937_RS02215 0.31 -0.7 491,176 - DDA3937_RS02215 0.31 -0.8 491,176 - DDA3937_RS02215 0.31 -1.0 491,176 - DDA3937_RS02215 0.31 -0.2 491,176 - DDA3937_RS02215 0.31 -1.3 491,191 + DDA3937_RS02215 0.33 -0.8
Or see this region's nucleotide sequence