Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01045 and DDA3937_RS01050 are separated by 17 nucleotides DDA3937_RS01050 and DDA3937_RS01055 are separated by 303 nucleotides DDA3937_RS01055 and DDA3937_RS01060 are separated by 9 nucleotides DDA3937_RS01060 and DDA3937_RS01065 are separated by 106 nucleotides DDA3937_RS01065 and DDA3937_RS01070 are separated by 234 nucleotides DDA3937_RS01070 and DDA3937_RS01075 are separated by 1 nucleotides
DDA3937_RS01045: DDA3937_RS01045 - tRNA-Thr, at 241,227 to 241,302
_RS01045
DDA3937_RS01050: DDA3937_RS01050 - tRNA-Tyr, at 241,320 to 241,404
_RS01050
DDA3937_RS01055: DDA3937_RS01055 - tRNA-Gly, at 241,708 to 241,782
_RS01055
DDA3937_RS01060: DDA3937_RS01060 - tRNA-Thr, at 241,792 to 241,867
_RS01060
DDA3937_RS01065: DDA3937_RS01065 - elongation factor Tu, at 241,974 to 243,158
_RS01065
DDA3937_RS01070: DDA3937_RS01070 - preprotein translocase subunit SecE, at 243,393 to 243,776
_RS01070
DDA3937_RS01075: DDA3937_RS01075 - transcription termination/antitermination protein NusG, at 243,778 to 244,323
_RS01075
Position (kb) 241
242
243
244 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 240.989 kb on - strand at 240.989 kb on - strand at 241.008 kb on + strand at 241.009 kb on + strand at 241.009 kb on + strand at 241.009 kb on + strand at 241.009 kb on + strand at 241.009 kb on + strand at 241.009 kb on + strand at 241.009 kb on + strand at 241.009 kb on + strand at 241.009 kb on + strand at 241.009 kb on + strand at 241.009 kb on + strand at 241.009 kb on + strand at 241.009 kb on + strand at 241.009 kb on + strand at 241.009 kb on + strand at 241.009 kb on + strand at 241.009 kb on + strand at 241.009 kb on + strand at 241.010 kb on - strand at 241.010 kb on - strand at 241.010 kb on - strand at 241.010 kb on - strand at 241.010 kb on - strand at 241.010 kb on - strand at 241.010 kb on - strand at 241.010 kb on - strand at 241.010 kb on - strand at 241.010 kb on - strand at 241.010 kb on - strand at 241.010 kb on - strand at 241.010 kb on - strand at 241.010 kb on - strand at 241.030 kb on + strand at 241.030 kb on + strand at 241.030 kb on + strand at 241.030 kb on + strand at 241.031 kb on - strand at 241.031 kb on - strand at 241.031 kb on - strand at 241.060 kb on + strand at 241.078 kb on - strand at 241.096 kb on + strand at 241.097 kb on - strand at 241.115 kb on + strand at 241.116 kb on - strand at 241.116 kb on - strand at 241.118 kb on + strand at 241.118 kb on + strand at 241.118 kb on + strand at 241.118 kb on + strand at 241.118 kb on + strand at 241.118 kb on + strand at 241.118 kb on + strand at 241.118 kb on + strand at 241.118 kb on + strand at 241.119 kb on - strand at 241.119 kb on - strand at 241.119 kb on - strand at 241.516 kb on + strand at 241.593 kb on + strand at 241.650 kb on + strand at 241.652 kb on + strand at 241.669 kb on + strand at 241.669 kb on + strand at 241.785 kb on + strand at 241.785 kb on + strand at 241.786 kb on - strand at 241.799 kb on + strand at 241.916 kb on - strand at 241.980 kb on - strand at 242.626 kb on + strand, within DDA3937_RS01065 at 242.626 kb on + strand, within DDA3937_RS01065
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 240,989 - +0.0 240,989 - -0.9 241,008 + -1.4 241,009 + +1.0 241,009 + -0.0 241,009 + +0.0 241,009 + +0.0 241,009 + -0.9 241,009 + +1.5 241,009 + +0.1 241,009 + -0.4 241,009 + +0.2 241,009 + +0.5 241,009 + -0.2 241,009 + -0.4 241,009 + +2.4 241,009 + +0.6 241,009 + +1.0 241,009 + -0.4 241,009 + +0.3 241,009 + -0.9 241,010 - +0.6 241,010 - +0.2 241,010 - -2.4 241,010 - -1.0 241,010 - +1.4 241,010 - +0.2 241,010 - -0.3 241,010 - +0.4 241,010 - +0.0 241,010 - +0.6 241,010 - -1.4 241,010 - -0.4 241,010 - -0.8 241,010 - +1.4 241,030 + -0.1 241,030 + -0.3 241,030 + -0.6 241,030 + -0.3 241,031 - -0.5 241,031 - +0.0 241,031 - +1.4 241,060 + +0.4 241,078 - +0.6 241,096 + -0.1 241,097 - -0.6 241,115 + +2.0 241,116 - -1.0 241,116 - +0.4 241,118 + -0.3 241,118 + +0.5 241,118 + -0.0 241,118 + -0.2 241,118 + -0.1 241,118 + +0.5 241,118 + +0.3 241,118 + -0.1 241,118 + +0.1 241,119 - -0.2 241,119 - +0.6 241,119 - +0.3 241,516 + +0.4 241,593 + -1.0 241,650 + -1.5 241,652 + +0.1 241,669 + +0.6 241,669 + -1.1 241,785 + +1.0 241,785 + +0.0 241,786 - -3.0 241,799 + +0.2 241,916 - -0.2 241,980 - +0.4 242,626 + DDA3937_RS01065 0.55 -2.8 242,626 + DDA3937_RS01065 0.55 -1.4
Or see this region's nucleotide sequence