Experiment: Control_TnN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_10004 and ECD_10005 are separated by 908 nucleotides ECD_10005 and ECD_10006 are separated by 39 nucleotides ECD_10006 and ECD_10007 are separated by 88 nucleotides ECD_10007 and ECD_10008 are separated by 191 nucleotides
ECD_10004: ECD_10004 - T7 DNA-directed RNA polymerase, at 750,421 to 753,072
_10004
ECD_10005: ECD_10005 - Excisionase, at 753,981 to 754,199
_10005
ECD_10006: ECD_10006 - hypothetical protein, at 754,239 to 754,406
_10006
ECD_10007: ECD_10007 - ea8.5, at 754,495 to 754,776
_10007
ECD_10008: ECD_10008 - ea22, at 754,968 to 755,516
_10008
Position (kb)
753
754
755 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 753.142 kb on - strand at 753.150 kb on - strand at 753.182 kb on - strand at 753.192 kb on - strand at 753.316 kb on - strand at 753.330 kb on - strand at 753.524 kb on + strand at 753.525 kb on - strand at 753.525 kb on - strand at 753.526 kb on + strand at 753.526 kb on + strand at 753.526 kb on + strand at 753.526 kb on + strand at 753.526 kb on + strand at 753.526 kb on + strand at 753.527 kb on - strand at 753.527 kb on - strand at 753.609 kb on - strand at 753.609 kb on - strand at 753.706 kb on - strand at 753.710 kb on + strand at 753.777 kb on - strand at 753.791 kb on - strand at 753.791 kb on - strand at 753.857 kb on + strand at 753.951 kb on - strand at 753.951 kb on - strand at 753.951 kb on - strand at 753.955 kb on - strand at 754.111 kb on - strand, within ECD_10005 at 754.196 kb on - strand at 754.196 kb on - strand at 754.196 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnN remove 753,142 - +0.8 753,150 - +0.3 753,182 - -0.3 753,192 - -0.4 753,316 - -0.5 753,330 - -0.6 753,524 + +0.2 753,525 - +0.0 753,525 - +0.9 753,526 + +2.0 753,526 + -0.2 753,526 + +0.9 753,526 + -0.5 753,526 + +1.3 753,526 + -0.1 753,527 - +0.0 753,527 - +0.3 753,609 - -0.3 753,609 - +0.0 753,706 - +0.5 753,710 + +0.7 753,777 - -0.9 753,791 - +0.1 753,791 - -0.3 753,857 + +0.2 753,951 - -0.0 753,951 - +0.5 753,951 - +0.0 753,955 - -0.2 754,111 - ECD_10005 0.59 -1.4 754,196 - -1.0 754,196 - +0.3 754,196 - -1.9
Or see this region's nucleotide sequence