Strain Fitness in Escherichia coli BL21 around ECD_04165

Experiment: Control_TnN

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_04162 and ECD_04163 are separated by 82 nucleotidesECD_04163 and ECD_04164 overlap by 82 nucleotidesECD_04164 and ECD_04165 are separated by 189 nucleotidesECD_04165 and ECD_04166 are separated by 16 nucleotidesECD_04166 and ECD_04167 are separated by 11 nucleotides ECD_04162: ECD_04162 - hypothetical protein, at 4,433,346 to 4,433,639 _04162 ECD_04163: ECD_04163 - IS1 protein InsB, at 4,433,722 to 4,434,225 _04163 ECD_04164: ECD_04164 - IS1 protein InsA, at 4,434,144 to 4,434,419 _04164 ECD_04165: ECD_04165 - putative DNA-binding transcriptional regulator, at 4,434,609 to 4,435,391 _04165 ECD_04166: ECD_04166 - putative epimerase, at 4,435,408 to 4,436,040 _04166 ECD_04167: ECD_04167 - putative phosphotransferase enzyme IIA component, at 4,436,052 to 4,436,483 _04167 Position (kb) 4434 4435 4436Strain fitness (log2 ratio) -1 0 1 2at 4434.495 kb on + strandat 4434.495 kb on + strandat 4434.495 kb on + strandat 4434.607 kb on + strandat 4434.607 kb on + strandat 4434.608 kb on - strandat 4434.615 kb on + strandat 4434.627 kb on + strandat 4434.668 kb on + strandat 4434.669 kb on - strandat 4434.669 kb on - strandat 4434.705 kb on - strand, within ECD_04165at 4434.707 kb on + strand, within ECD_04165at 4434.708 kb on - strand, within ECD_04165at 4434.708 kb on - strand, within ECD_04165at 4434.714 kb on + strand, within ECD_04165at 4434.714 kb on + strand, within ECD_04165at 4434.715 kb on - strand, within ECD_04165at 4434.715 kb on - strand, within ECD_04165at 4434.723 kb on + strand, within ECD_04165at 4434.773 kb on + strand, within ECD_04165at 4434.795 kb on - strand, within ECD_04165at 4434.873 kb on - strand, within ECD_04165at 4434.967 kb on + strand, within ECD_04165at 4434.967 kb on + strand, within ECD_04165at 4435.134 kb on + strand, within ECD_04165at 4435.134 kb on + strand, within ECD_04165at 4435.135 kb on - strand, within ECD_04165at 4435.348 kb on + strandat 4435.410 kb on - strandat 4435.429 kb on + strandat 4435.429 kb on + strandat 4435.430 kb on - strandat 4435.430 kb on - strandat 4435.430 kb on - strandat 4435.479 kb on + strand, within ECD_04166at 4435.479 kb on + strand, within ECD_04166at 4435.480 kb on - strand, within ECD_04166at 4435.480 kb on - strand, within ECD_04166at 4435.480 kb on - strand, within ECD_04166at 4435.480 kb on - strand, within ECD_04166at 4435.524 kb on + strand, within ECD_04166at 4435.602 kb on + strand, within ECD_04166at 4435.702 kb on - strand, within ECD_04166at 4435.705 kb on + strand, within ECD_04166at 4435.760 kb on + strand, within ECD_04166at 4435.921 kb on - strand, within ECD_04166at 4436.040 kb on + strandat 4436.159 kb on + strand, within ECD_04167at 4436.245 kb on - strand, within ECD_04167at 4436.256 kb on - strand, within ECD_04167at 4436.267 kb on + strand, within ECD_04167at 4436.326 kb on + strand, within ECD_04167at 4436.343 kb on - strand, within ECD_04167at 4436.371 kb on + strand, within ECD_04167at 4436.371 kb on + strand, within ECD_04167at 4436.371 kb on + strand, within ECD_04167at 4436.371 kb on + strand, within ECD_04167at 4436.371 kb on + strand, within ECD_04167at 4436.372 kb on - strand, within ECD_04167

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Control_TnN
remove
4,434,495 + -1.4
4,434,495 + +0.6
4,434,495 + +0.9
4,434,607 + +0.7
4,434,607 + +0.7
4,434,608 - +0.0
4,434,615 + +0.4
4,434,627 + +1.0
4,434,668 + -0.8
4,434,669 - -0.2
4,434,669 - +0.5
4,434,705 - ECD_04165 0.12 -0.1
4,434,707 + ECD_04165 0.13 -0.1
4,434,708 - ECD_04165 0.13 -0.6
4,434,708 - ECD_04165 0.13 -0.7
4,434,714 + ECD_04165 0.13 -1.2
4,434,714 + ECD_04165 0.13 +0.1
4,434,715 - ECD_04165 0.14 -1.5
4,434,715 - ECD_04165 0.14 -0.0
4,434,723 + ECD_04165 0.15 -0.5
4,434,773 + ECD_04165 0.21 -0.4
4,434,795 - ECD_04165 0.24 -1.6
4,434,873 - ECD_04165 0.34 -0.6
4,434,967 + ECD_04165 0.46 -0.6
4,434,967 + ECD_04165 0.46 -0.1
4,435,134 + ECD_04165 0.67 -0.3
4,435,134 + ECD_04165 0.67 -0.9
4,435,135 - ECD_04165 0.67 +0.2
4,435,348 + +0.5
4,435,410 - +0.8
4,435,429 + +1.5
4,435,429 + -0.2
4,435,430 - +1.5
4,435,430 - +0.5
4,435,430 - -0.7
4,435,479 + ECD_04166 0.11 +0.5
4,435,479 + ECD_04166 0.11 +0.4
4,435,480 - ECD_04166 0.11 -0.7
4,435,480 - ECD_04166 0.11 -0.4
4,435,480 - ECD_04166 0.11 -1.3
4,435,480 - ECD_04166 0.11 -0.0
4,435,524 + ECD_04166 0.18 +0.1
4,435,602 + ECD_04166 0.31 -0.0
4,435,702 - ECD_04166 0.46 +0.7
4,435,705 + ECD_04166 0.47 -0.9
4,435,760 + ECD_04166 0.56 +0.1
4,435,921 - ECD_04166 0.81 +0.3
4,436,040 + -0.5
4,436,159 + ECD_04167 0.25 -0.1
4,436,245 - ECD_04167 0.45 -0.0
4,436,256 - ECD_04167 0.47 +2.5
4,436,267 + ECD_04167 0.50 -0.0
4,436,326 + ECD_04167 0.63 +0.9
4,436,343 - ECD_04167 0.67 +0.2
4,436,371 + ECD_04167 0.74 +0.3
4,436,371 + ECD_04167 0.74 -0.2
4,436,371 + ECD_04167 0.74 -0.3
4,436,371 + ECD_04167 0.74 -0.6
4,436,371 + ECD_04167 0.74 +0.6
4,436,372 - ECD_04167 0.74 +0.7

Or see this region's nucleotide sequence