Experiment: Control_TnN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04162 and ECD_04163 are separated by 82 nucleotides ECD_04163 and ECD_04164 overlap by 82 nucleotides ECD_04164 and ECD_04165 are separated by 189 nucleotides ECD_04165 and ECD_04166 are separated by 16 nucleotides ECD_04166 and ECD_04167 are separated by 11 nucleotides
ECD_04162: ECD_04162 - hypothetical protein, at 4,433,346 to 4,433,639
_04162
ECD_04163: ECD_04163 - IS1 protein InsB, at 4,433,722 to 4,434,225
_04163
ECD_04164: ECD_04164 - IS1 protein InsA, at 4,434,144 to 4,434,419
_04164
ECD_04165: ECD_04165 - putative DNA-binding transcriptional regulator, at 4,434,609 to 4,435,391
_04165
ECD_04166: ECD_04166 - putative epimerase, at 4,435,408 to 4,436,040
_04166
ECD_04167: ECD_04167 - putative phosphotransferase enzyme IIA component, at 4,436,052 to 4,436,483
_04167
Position (kb)
4434
4435
4436 Strain fitness (log2 ratio)
-1
0
1
2 at 4434.495 kb on + strand at 4434.495 kb on + strand at 4434.495 kb on + strand at 4434.607 kb on + strand at 4434.607 kb on + strand at 4434.608 kb on - strand at 4434.615 kb on + strand at 4434.627 kb on + strand at 4434.668 kb on + strand at 4434.669 kb on - strand at 4434.669 kb on - strand at 4434.705 kb on - strand, within ECD_04165 at 4434.707 kb on + strand, within ECD_04165 at 4434.708 kb on - strand, within ECD_04165 at 4434.708 kb on - strand, within ECD_04165 at 4434.714 kb on + strand, within ECD_04165 at 4434.714 kb on + strand, within ECD_04165 at 4434.715 kb on - strand, within ECD_04165 at 4434.715 kb on - strand, within ECD_04165 at 4434.723 kb on + strand, within ECD_04165 at 4434.773 kb on + strand, within ECD_04165 at 4434.795 kb on - strand, within ECD_04165 at 4434.873 kb on - strand, within ECD_04165 at 4434.967 kb on + strand, within ECD_04165 at 4434.967 kb on + strand, within ECD_04165 at 4435.134 kb on + strand, within ECD_04165 at 4435.134 kb on + strand, within ECD_04165 at 4435.135 kb on - strand, within ECD_04165 at 4435.348 kb on + strand at 4435.410 kb on - strand at 4435.429 kb on + strand at 4435.429 kb on + strand at 4435.430 kb on - strand at 4435.430 kb on - strand at 4435.430 kb on - strand at 4435.479 kb on + strand, within ECD_04166 at 4435.479 kb on + strand, within ECD_04166 at 4435.480 kb on - strand, within ECD_04166 at 4435.480 kb on - strand, within ECD_04166 at 4435.480 kb on - strand, within ECD_04166 at 4435.480 kb on - strand, within ECD_04166 at 4435.524 kb on + strand, within ECD_04166 at 4435.602 kb on + strand, within ECD_04166 at 4435.702 kb on - strand, within ECD_04166 at 4435.705 kb on + strand, within ECD_04166 at 4435.760 kb on + strand, within ECD_04166 at 4435.921 kb on - strand, within ECD_04166 at 4436.040 kb on + strand at 4436.159 kb on + strand, within ECD_04167 at 4436.245 kb on - strand, within ECD_04167 at 4436.256 kb on - strand, within ECD_04167 at 4436.267 kb on + strand, within ECD_04167 at 4436.326 kb on + strand, within ECD_04167 at 4436.343 kb on - strand, within ECD_04167 at 4436.371 kb on + strand, within ECD_04167 at 4436.371 kb on + strand, within ECD_04167 at 4436.371 kb on + strand, within ECD_04167 at 4436.371 kb on + strand, within ECD_04167 at 4436.371 kb on + strand, within ECD_04167 at 4436.372 kb on - strand, within ECD_04167
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnN remove 4,434,495 + -1.4 4,434,495 + +0.6 4,434,495 + +0.9 4,434,607 + +0.7 4,434,607 + +0.7 4,434,608 - +0.0 4,434,615 + +0.4 4,434,627 + +1.0 4,434,668 + -0.8 4,434,669 - -0.2 4,434,669 - +0.5 4,434,705 - ECD_04165 0.12 -0.1 4,434,707 + ECD_04165 0.13 -0.1 4,434,708 - ECD_04165 0.13 -0.6 4,434,708 - ECD_04165 0.13 -0.7 4,434,714 + ECD_04165 0.13 -1.2 4,434,714 + ECD_04165 0.13 +0.1 4,434,715 - ECD_04165 0.14 -1.5 4,434,715 - ECD_04165 0.14 -0.0 4,434,723 + ECD_04165 0.15 -0.5 4,434,773 + ECD_04165 0.21 -0.4 4,434,795 - ECD_04165 0.24 -1.6 4,434,873 - ECD_04165 0.34 -0.6 4,434,967 + ECD_04165 0.46 -0.6 4,434,967 + ECD_04165 0.46 -0.1 4,435,134 + ECD_04165 0.67 -0.3 4,435,134 + ECD_04165 0.67 -0.9 4,435,135 - ECD_04165 0.67 +0.2 4,435,348 + +0.5 4,435,410 - +0.8 4,435,429 + +1.5 4,435,429 + -0.2 4,435,430 - +1.5 4,435,430 - +0.5 4,435,430 - -0.7 4,435,479 + ECD_04166 0.11 +0.5 4,435,479 + ECD_04166 0.11 +0.4 4,435,480 - ECD_04166 0.11 -0.7 4,435,480 - ECD_04166 0.11 -0.4 4,435,480 - ECD_04166 0.11 -1.3 4,435,480 - ECD_04166 0.11 -0.0 4,435,524 + ECD_04166 0.18 +0.1 4,435,602 + ECD_04166 0.31 -0.0 4,435,702 - ECD_04166 0.46 +0.7 4,435,705 + ECD_04166 0.47 -0.9 4,435,760 + ECD_04166 0.56 +0.1 4,435,921 - ECD_04166 0.81 +0.3 4,436,040 + -0.5 4,436,159 + ECD_04167 0.25 -0.1 4,436,245 - ECD_04167 0.45 -0.0 4,436,256 - ECD_04167 0.47 +2.5 4,436,267 + ECD_04167 0.50 -0.0 4,436,326 + ECD_04167 0.63 +0.9 4,436,343 - ECD_04167 0.67 +0.2 4,436,371 + ECD_04167 0.74 +0.3 4,436,371 + ECD_04167 0.74 -0.2 4,436,371 + ECD_04167 0.74 -0.3 4,436,371 + ECD_04167 0.74 -0.6 4,436,371 + ECD_04167 0.74 +0.6 4,436,372 - ECD_04167 0.74 +0.7
Or see this region's nucleotide sequence