Experiment: Control_TnN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04037 and ECD_04038 overlap by 8 nucleotides ECD_04038 and ECD_04039 are separated by 85 nucleotides ECD_04039 and ECD_04040 are separated by 75 nucleotides
ECD_04037: ECD_04037 - methyl-directed mismatch repair protein, at 4,303,932 to 4,305,779
_04037
ECD_04038: ECD_04038 - delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase, at 4,305,772 to 4,306,722
_04038
ECD_04039: ECD_04039 - global sRNA chaperone; HF-I, host factor for RNA phage Q beta replication, at 4,306,808 to 4,307,116
_04039
ECD_04040: ECD_04040 - GTPase, stimulated by 50S subunit binding; Mn(2+) homeostasis regulator, at 4,307,192 to 4,308,472
_04040
Position (kb) 4305
4306
4307 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4304.802 kb on + strand, within ECD_04037 at 4304.803 kb on - strand, within ECD_04037 at 4304.894 kb on + strand, within ECD_04037 at 4304.898 kb on + strand, within ECD_04037 at 4304.899 kb on - strand, within ECD_04037 at 4304.920 kb on + strand, within ECD_04037 at 4304.920 kb on + strand, within ECD_04037 at 4304.921 kb on - strand, within ECD_04037 at 4305.057 kb on + strand, within ECD_04037 at 4305.057 kb on + strand, within ECD_04037 at 4305.251 kb on + strand, within ECD_04037 at 4305.305 kb on - strand, within ECD_04037 at 4305.431 kb on - strand, within ECD_04037 at 4305.431 kb on - strand, within ECD_04037 at 4305.559 kb on + strand, within ECD_04037 at 4305.559 kb on + strand, within ECD_04037 at 4305.560 kb on - strand, within ECD_04037 at 4305.691 kb on + strand at 4305.731 kb on - strand at 4305.878 kb on + strand, within ECD_04038 at 4305.906 kb on + strand, within ECD_04038 at 4305.906 kb on + strand, within ECD_04038 at 4305.984 kb on + strand, within ECD_04038 at 4306.710 kb on + strand at 4306.741 kb on + strand at 4306.785 kb on + strand at 4306.785 kb on + strand at 4306.785 kb on + strand at 4306.785 kb on + strand at 4306.791 kb on + strand at 4306.791 kb on + strand at 4306.987 kb on + strand, within ECD_04039 at 4307.023 kb on + strand, within ECD_04039 at 4307.050 kb on + strand, within ECD_04039 at 4307.050 kb on + strand, within ECD_04039 at 4307.050 kb on + strand, within ECD_04039 at 4307.050 kb on + strand, within ECD_04039 at 4307.054 kb on + strand, within ECD_04039 at 4307.054 kb on + strand, within ECD_04039 at 4307.054 kb on + strand, within ECD_04039 at 4307.054 kb on + strand, within ECD_04039 at 4307.054 kb on + strand, within ECD_04039 at 4307.054 kb on + strand, within ECD_04039 at 4307.065 kb on + strand, within ECD_04039 at 4307.080 kb on + strand, within ECD_04039 at 4307.173 kb on + strand at 4307.177 kb on + strand at 4307.185 kb on + strand at 4307.187 kb on + strand at 4307.187 kb on + strand at 4307.187 kb on + strand at 4307.187 kb on + strand at 4307.187 kb on + strand at 4307.240 kb on + strand at 4307.551 kb on + strand, within ECD_04040 at 4307.551 kb on + strand, within ECD_04040
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnN remove 4,304,802 + ECD_04037 0.47 +0.1 4,304,803 - ECD_04037 0.47 -0.2 4,304,894 + ECD_04037 0.52 -0.2 4,304,898 + ECD_04037 0.52 -1.1 4,304,899 - ECD_04037 0.52 +0.2 4,304,920 + ECD_04037 0.53 -0.5 4,304,920 + ECD_04037 0.53 +0.6 4,304,921 - ECD_04037 0.54 +0.0 4,305,057 + ECD_04037 0.61 +1.1 4,305,057 + ECD_04037 0.61 +0.6 4,305,251 + ECD_04037 0.71 +0.5 4,305,305 - ECD_04037 0.74 +0.1 4,305,431 - ECD_04037 0.81 +0.2 4,305,431 - ECD_04037 0.81 +0.7 4,305,559 + ECD_04037 0.88 -0.5 4,305,559 + ECD_04037 0.88 +1.1 4,305,560 - ECD_04037 0.88 -1.5 4,305,691 + +0.6 4,305,731 - -2.2 4,305,878 + ECD_04038 0.11 -0.8 4,305,906 + ECD_04038 0.14 -0.1 4,305,906 + ECD_04038 0.14 +0.5 4,305,984 + ECD_04038 0.22 -0.1 4,306,710 + -0.0 4,306,741 + -0.3 4,306,785 + -0.2 4,306,785 + +2.4 4,306,785 + +0.1 4,306,785 + +0.4 4,306,791 + +0.3 4,306,791 + +0.9 4,306,987 + ECD_04039 0.58 +0.9 4,307,023 + ECD_04039 0.70 -0.5 4,307,050 + ECD_04039 0.78 -0.2 4,307,050 + ECD_04039 0.78 +0.3 4,307,050 + ECD_04039 0.78 +0.3 4,307,050 + ECD_04039 0.78 +0.2 4,307,054 + ECD_04039 0.80 +0.3 4,307,054 + ECD_04039 0.80 -0.3 4,307,054 + ECD_04039 0.80 -0.7 4,307,054 + ECD_04039 0.80 +0.1 4,307,054 + ECD_04039 0.80 -0.5 4,307,054 + ECD_04039 0.80 -0.2 4,307,065 + ECD_04039 0.83 -1.3 4,307,080 + ECD_04039 0.88 +0.8 4,307,173 + +0.3 4,307,177 + -0.4 4,307,185 + +1.0 4,307,187 + +0.5 4,307,187 + +0.6 4,307,187 + +0.2 4,307,187 + +0.8 4,307,187 + +0.3 4,307,240 + +0.2 4,307,551 + ECD_04040 0.28 +0.1 4,307,551 + ECD_04040 0.28 -0.5
Or see this region's nucleotide sequence