Strain Fitness in Escherichia coli BL21 around ECD_03887

Experiment: Control_TnN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03886 and ECD_03887 are separated by 29 nucleotidesECD_03887 and ECD_03888 are separated by 280 nucleotides ECD_03886: ECD_03886 - malate synthase A, at 4,123,363 to 4,124,964 _03886 ECD_03887: ECD_03887 - isocitrate lyase, at 4,124,994 to 4,126,298 _03887 ECD_03888: ECD_03888 - isocitrate dehydrogenase kinase/phosphatase, at 4,126,579 to 4,128,315 _03888 Position (kb) 4124 4125 4126 4127Strain fitness (log2 ratio) -2 -1 0 1 2at 4123.997 kb on - strand, within ECD_03886at 4124.053 kb on + strand, within ECD_03886at 4124.054 kb on - strand, within ECD_03886at 4124.054 kb on - strand, within ECD_03886at 4124.166 kb on + strand, within ECD_03886at 4124.167 kb on - strand, within ECD_03886at 4124.197 kb on + strand, within ECD_03886at 4124.197 kb on + strand, within ECD_03886at 4124.198 kb on - strand, within ECD_03886at 4124.209 kb on + strand, within ECD_03886at 4124.209 kb on + strand, within ECD_03886at 4124.310 kb on + strand, within ECD_03886at 4124.408 kb on + strand, within ECD_03886at 4124.408 kb on + strand, within ECD_03886at 4124.613 kb on + strand, within ECD_03886at 4124.613 kb on + strand, within ECD_03886at 4124.614 kb on - strand, within ECD_03886at 4124.687 kb on - strand, within ECD_03886at 4124.921 kb on + strandat 4124.922 kb on - strandat 4124.974 kb on + strandat 4124.974 kb on + strandat 4124.974 kb on + strandat 4124.974 kb on + strandat 4124.974 kb on + strandat 4124.974 kb on + strandat 4124.974 kb on + strandat 4124.974 kb on + strandat 4124.974 kb on + strandat 4124.974 kb on + strandat 4124.974 kb on + strandat 4124.975 kb on - strandat 4124.975 kb on - strandat 4124.975 kb on - strandat 4124.975 kb on - strandat 4124.975 kb on - strandat 4124.975 kb on - strandat 4124.975 kb on - strandat 4124.975 kb on - strandat 4124.978 kb on + strandat 4124.979 kb on - strandat 4125.005 kb on + strandat 4125.062 kb on + strandat 4125.062 kb on + strandat 4125.063 kb on - strandat 4125.072 kb on + strandat 4125.187 kb on - strand, within ECD_03887at 4125.187 kb on - strand, within ECD_03887at 4125.258 kb on + strand, within ECD_03887at 4125.258 kb on + strand, within ECD_03887at 4125.259 kb on - strand, within ECD_03887at 4125.433 kb on - strand, within ECD_03887at 4125.441 kb on + strand, within ECD_03887at 4125.441 kb on + strand, within ECD_03887at 4125.441 kb on + strand, within ECD_03887at 4125.601 kb on + strand, within ECD_03887at 4125.716 kb on + strand, within ECD_03887at 4125.735 kb on + strand, within ECD_03887at 4125.750 kb on - strand, within ECD_03887at 4125.837 kb on + strand, within ECD_03887at 4125.939 kb on + strand, within ECD_03887at 4125.939 kb on + strand, within ECD_03887at 4125.939 kb on + strand, within ECD_03887at 4125.939 kb on + strand, within ECD_03887at 4125.940 kb on - strand, within ECD_03887at 4125.941 kb on + strand, within ECD_03887at 4125.941 kb on + strand, within ECD_03887at 4126.027 kb on - strand, within ECD_03887at 4126.027 kb on - strand, within ECD_03887at 4126.098 kb on + strand, within ECD_03887at 4126.125 kb on + strand, within ECD_03887at 4126.125 kb on + strand, within ECD_03887at 4126.125 kb on + strand, within ECD_03887at 4126.173 kb on + strandat 4126.175 kb on + strandat 4126.175 kb on + strandat 4126.175 kb on + strandat 4126.175 kb on + strandat 4126.175 kb on + strandat 4126.175 kb on + strandat 4126.176 kb on - strandat 4126.183 kb on + strandat 4126.183 kb on + strandat 4126.212 kb on + strandat 4126.232 kb on + strandat 4126.233 kb on - strandat 4126.233 kb on - strandat 4126.259 kb on + strandat 4126.297 kb on - strandat 4126.323 kb on - strandat 4126.393 kb on + strandat 4126.393 kb on + strandat 4126.393 kb on + strandat 4126.394 kb on - strandat 4126.394 kb on - strandat 4126.394 kb on - strandat 4126.394 kb on - strandat 4126.394 kb on - strandat 4126.403 kb on - strandat 4126.403 kb on - strandat 4126.403 kb on - strandat 4126.403 kb on - strandat 4126.500 kb on + strandat 4126.500 kb on + strandat 4126.518 kb on + strandat 4126.536 kb on + strandat 4126.537 kb on - strandat 4126.598 kb on + strandat 4126.599 kb on - strandat 4126.640 kb on - strandat 4126.782 kb on + strand, within ECD_03888at 4126.783 kb on - strand, within ECD_03888at 4126.783 kb on - strand, within ECD_03888at 4126.783 kb on - strand, within ECD_03888at 4126.834 kb on + strand, within ECD_03888at 4126.834 kb on + strand, within ECD_03888at 4126.897 kb on + strand, within ECD_03888at 4126.950 kb on + strand, within ECD_03888at 4126.977 kb on + strand, within ECD_03888at 4126.981 kb on - strand, within ECD_03888at 4127.082 kb on + strand, within ECD_03888at 4127.101 kb on + strand, within ECD_03888at 4127.101 kb on + strand, within ECD_03888at 4127.159 kb on + strand, within ECD_03888at 4127.160 kb on - strand, within ECD_03888at 4127.279 kb on + strand, within ECD_03888at 4127.279 kb on + strand, within ECD_03888at 4127.279 kb on + strand, within ECD_03888at 4127.280 kb on - strand, within ECD_03888at 4127.280 kb on - strand, within ECD_03888at 4127.283 kb on + strand, within ECD_03888at 4127.283 kb on + strand, within ECD_03888at 4127.289 kb on + strand, within ECD_03888at 4127.290 kb on - strand, within ECD_03888

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_TnN
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4,123,997 - ECD_03886 0.40 +0.4
4,124,053 + ECD_03886 0.43 +1.1
4,124,054 - ECD_03886 0.43 -0.1
4,124,054 - ECD_03886 0.43 +0.3
4,124,166 + ECD_03886 0.50 +0.0
4,124,167 - ECD_03886 0.50 +0.5
4,124,197 + ECD_03886 0.52 +0.2
4,124,197 + ECD_03886 0.52 +0.2
4,124,198 - ECD_03886 0.52 -0.4
4,124,209 + ECD_03886 0.53 -1.2
4,124,209 + ECD_03886 0.53 -0.7
4,124,310 + ECD_03886 0.59 -0.3
4,124,408 + ECD_03886 0.65 +0.9
4,124,408 + ECD_03886 0.65 -0.1
4,124,613 + ECD_03886 0.78 -0.2
4,124,613 + ECD_03886 0.78 +0.1
4,124,614 - ECD_03886 0.78 -0.1
4,124,687 - ECD_03886 0.83 +0.9
4,124,921 + -0.5
4,124,922 - +1.3
4,124,974 + -0.1
4,124,974 + +0.3
4,124,974 + -0.1
4,124,974 + -0.0
4,124,974 + -0.2
4,124,974 + +0.3
4,124,974 + -0.7
4,124,974 + +0.2
4,124,974 + +0.1
4,124,974 + +0.5
4,124,974 + +0.1
4,124,975 - +0.7
4,124,975 - +0.9
4,124,975 - -0.3
4,124,975 - -0.9
4,124,975 - +0.7
4,124,975 - +0.2
4,124,975 - +1.0
4,124,975 - +0.4
4,124,978 + -0.4
4,124,979 - +0.2
4,125,005 + +0.3
4,125,062 + +0.3
4,125,062 + +0.1
4,125,063 - -0.2
4,125,072 + +0.0
4,125,187 - ECD_03887 0.15 -0.6
4,125,187 - ECD_03887 0.15 -0.4
4,125,258 + ECD_03887 0.20 +2.0
4,125,258 + ECD_03887 0.20 +0.3
4,125,259 - ECD_03887 0.20 +0.8
4,125,433 - ECD_03887 0.34 -0.3
4,125,441 + ECD_03887 0.34 +1.5
4,125,441 + ECD_03887 0.34 +0.7
4,125,441 + ECD_03887 0.34 -0.1
4,125,601 + ECD_03887 0.47 +0.4
4,125,716 + ECD_03887 0.55 -0.2
4,125,735 + ECD_03887 0.57 +1.4
4,125,750 - ECD_03887 0.58 -0.2
4,125,837 + ECD_03887 0.65 +2.1
4,125,939 + ECD_03887 0.72 +0.6
4,125,939 + ECD_03887 0.72 +0.3
4,125,939 + ECD_03887 0.72 +0.3
4,125,939 + ECD_03887 0.72 +0.3
4,125,940 - ECD_03887 0.72 +0.1
4,125,941 + ECD_03887 0.73 -0.1
4,125,941 + ECD_03887 0.73 -1.0
4,126,027 - ECD_03887 0.79 +0.1
4,126,027 - ECD_03887 0.79 +0.1
4,126,098 + ECD_03887 0.85 +0.5
4,126,125 + ECD_03887 0.87 -0.1
4,126,125 + ECD_03887 0.87 -0.3
4,126,125 + ECD_03887 0.87 -0.3
4,126,173 + +0.7
4,126,175 + -0.8
4,126,175 + +0.1
4,126,175 + -0.2
4,126,175 + -0.1
4,126,175 + +0.1
4,126,175 + +0.2
4,126,176 - -0.1
4,126,183 + +0.1
4,126,183 + -0.2
4,126,212 + +0.1
4,126,232 + -0.9
4,126,233 - -0.0
4,126,233 - +0.0
4,126,259 + +1.2
4,126,297 - -0.0
4,126,323 - -0.2
4,126,393 + -0.3
4,126,393 + +1.0
4,126,393 + +0.4
4,126,394 - -0.3
4,126,394 - -2.2
4,126,394 - +0.6
4,126,394 - +0.2
4,126,394 - -0.2
4,126,403 - +0.4
4,126,403 - -0.3
4,126,403 - +0.2
4,126,403 - +0.8
4,126,500 + +0.0
4,126,500 + -0.5
4,126,518 + +0.4
4,126,536 + -0.0
4,126,537 - -0.1
4,126,598 + +0.0
4,126,599 - +0.3
4,126,640 - -0.6
4,126,782 + ECD_03888 0.12 -0.1
4,126,783 - ECD_03888 0.12 +0.7
4,126,783 - ECD_03888 0.12 -1.5
4,126,783 - ECD_03888 0.12 -2.3
4,126,834 + ECD_03888 0.15 -0.5
4,126,834 + ECD_03888 0.15 -0.9
4,126,897 + ECD_03888 0.18 +0.2
4,126,950 + ECD_03888 0.21 -0.4
4,126,977 + ECD_03888 0.23 +0.3
4,126,981 - ECD_03888 0.23 -0.0
4,127,082 + ECD_03888 0.29 +0.5
4,127,101 + ECD_03888 0.30 +0.6
4,127,101 + ECD_03888 0.30 +0.3
4,127,159 + ECD_03888 0.33 +0.7
4,127,160 - ECD_03888 0.33 -0.4
4,127,279 + ECD_03888 0.40 +0.2
4,127,279 + ECD_03888 0.40 -0.4
4,127,279 + ECD_03888 0.40 -1.9
4,127,280 - ECD_03888 0.40 +0.5
4,127,280 - ECD_03888 0.40 +0.4
4,127,283 + ECD_03888 0.41 +0.0
4,127,283 + ECD_03888 0.41 +0.9
4,127,289 + ECD_03888 0.41 -0.8
4,127,290 - ECD_03888 0.41 +0.1

Or see this region's nucleotide sequence