Experiment: Control_TnN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03795 and ECD_03796 are separated by 148 nucleotides ECD_03796 and ECD_03797 are separated by 105 nucleotides ECD_03797 and ECD_03798 overlap by 4 nucleotides ECD_03798 and ECD_03799 are separated by 149 nucleotides
ECD_03795: ECD_03795 - 2-keto-3-deoxy-D-gluconate transporter, at 4,009,612 to 4,010,595
_03795
ECD_03796: ECD_03796 - 6-N-hydroxylaminopurine resistance protein, at 4,010,744 to 4,011,418
_03796
ECD_03797: ECD_03797 - sensory histidine kinase in two-component regulatory system with CpxR, at 4,011,524 to 4,012,897
_03797
ECD_03798: ECD_03798 - response regulator in two-component regulatory system with CpxA, at 4,012,894 to 4,013,592
_03798
ECD_03799: ECD_03799 - inhibitor of the cpx response; periplasmic adaptor protein, at 4,013,742 to 4,014,242
_03799
Position (kb)
4011
4012
4013 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4010.533 kb on - strand at 4010.544 kb on + strand at 4010.544 kb on + strand at 4010.545 kb on - strand at 4010.545 kb on - strand at 4010.629 kb on + strand at 4010.667 kb on + strand at 4010.668 kb on - strand at 4010.672 kb on - strand at 4010.697 kb on - strand at 4010.701 kb on + strand at 4010.763 kb on + strand at 4010.763 kb on + strand at 4010.764 kb on - strand at 4010.764 kb on - strand at 4010.764 kb on - strand at 4010.764 kb on - strand at 4010.764 kb on - strand at 4010.765 kb on + strand at 4010.765 kb on + strand at 4010.765 kb on + strand at 4010.765 kb on + strand at 4010.766 kb on - strand at 4010.816 kb on - strand, within ECD_03796 at 4010.937 kb on - strand, within ECD_03796 at 4010.937 kb on - strand, within ECD_03796 at 4010.937 kb on - strand, within ECD_03796 at 4011.032 kb on - strand, within ECD_03796 at 4011.032 kb on - strand, within ECD_03796 at 4011.038 kb on + strand, within ECD_03796 at 4011.038 kb on + strand, within ECD_03796 at 4011.038 kb on + strand, within ECD_03796 at 4011.039 kb on - strand, within ECD_03796 at 4011.039 kb on - strand, within ECD_03796 at 4011.039 kb on - strand, within ECD_03796 at 4011.072 kb on + strand, within ECD_03796 at 4011.072 kb on + strand, within ECD_03796 at 4011.073 kb on - strand, within ECD_03796 at 4011.073 kb on - strand, within ECD_03796 at 4011.116 kb on + strand, within ECD_03796 at 4011.116 kb on + strand, within ECD_03796 at 4011.164 kb on - strand, within ECD_03796 at 4011.179 kb on + strand, within ECD_03796 at 4011.179 kb on + strand, within ECD_03796 at 4011.179 kb on + strand, within ECD_03796 at 4011.179 kb on + strand, within ECD_03796 at 4011.179 kb on + strand, within ECD_03796 at 4011.179 kb on + strand, within ECD_03796 at 4011.180 kb on - strand, within ECD_03796 at 4011.180 kb on - strand, within ECD_03796 at 4011.180 kb on - strand, within ECD_03796 at 4011.180 kb on - strand, within ECD_03796 at 4011.180 kb on - strand, within ECD_03796 at 4011.181 kb on + strand, within ECD_03796 at 4011.182 kb on - strand, within ECD_03796 at 4011.283 kb on + strand, within ECD_03796 at 4011.283 kb on + strand, within ECD_03796 at 4011.283 kb on + strand, within ECD_03796 at 4011.284 kb on - strand, within ECD_03796 at 4011.440 kb on - strand at 4011.510 kb on + strand at 4011.511 kb on - strand at 4011.526 kb on - strand at 4011.535 kb on + strand at 4011.536 kb on - strand at 4011.537 kb on + strand at 4011.687 kb on + strand, within ECD_03797 at 4011.752 kb on - strand, within ECD_03797 at 4011.761 kb on - strand, within ECD_03797 at 4011.800 kb on - strand, within ECD_03797 at 4012.010 kb on - strand, within ECD_03797 at 4012.010 kb on - strand, within ECD_03797 at 4012.325 kb on - strand, within ECD_03797 at 4012.477 kb on - strand, within ECD_03797 at 4012.531 kb on - strand, within ECD_03797 at 4012.670 kb on - strand, within ECD_03797 at 4012.670 kb on - strand, within ECD_03797 at 4012.670 kb on - strand, within ECD_03797 at 4012.704 kb on - strand, within ECD_03797 at 4012.893 kb on - strand at 4013.050 kb on + strand, within ECD_03798 at 4013.304 kb on - strand, within ECD_03798 at 4013.368 kb on - strand, within ECD_03798 at 4013.405 kb on - strand, within ECD_03798 at 4013.543 kb on - strand at 4013.543 kb on - strand at 4013.576 kb on - strand at 4013.598 kb on - strand at 4013.638 kb on - strand at 4013.650 kb on + strand at 4013.650 kb on + strand at 4013.650 kb on + strand at 4013.650 kb on + strand at 4013.651 kb on - strand at 4013.651 kb on - strand at 4013.651 kb on - strand at 4013.651 kb on - strand at 4013.661 kb on - strand at 4013.695 kb on - strand at 4013.749 kb on + strand at 4013.749 kb on + strand at 4013.749 kb on + strand at 4013.749 kb on + strand at 4013.749 kb on + strand at 4013.749 kb on + strand at 4013.749 kb on + strand at 4013.750 kb on - strand at 4013.750 kb on - strand at 4013.750 kb on - strand at 4013.753 kb on + strand at 4013.794 kb on + strand, within ECD_03799 at 4013.794 kb on + strand, within ECD_03799 at 4013.849 kb on + strand, within ECD_03799 at 4013.861 kb on + strand, within ECD_03799 at 4013.861 kb on + strand, within ECD_03799 at 4013.873 kb on + strand, within ECD_03799 at 4013.874 kb on - strand, within ECD_03799 at 4013.874 kb on - strand, within ECD_03799 at 4013.874 kb on - strand, within ECD_03799 at 4013.874 kb on - strand, within ECD_03799 at 4013.887 kb on + strand, within ECD_03799 at 4013.887 kb on + strand, within ECD_03799 at 4013.887 kb on + strand, within ECD_03799 at 4013.888 kb on - strand, within ECD_03799
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnN remove 4,010,533 - +0.4 4,010,544 + -2.0 4,010,544 + -0.5 4,010,545 - +0.6 4,010,545 - +0.3 4,010,629 + +0.6 4,010,667 + -0.1 4,010,668 - -1.5 4,010,672 - +0.6 4,010,697 - +0.0 4,010,701 + -0.7 4,010,763 + +0.0 4,010,763 + +0.9 4,010,764 - +0.5 4,010,764 - +0.2 4,010,764 - -0.3 4,010,764 - +0.1 4,010,764 - -0.2 4,010,765 + -0.6 4,010,765 + -0.0 4,010,765 + -0.4 4,010,765 + -0.2 4,010,766 - -0.6 4,010,816 - ECD_03796 0.11 +0.3 4,010,937 - ECD_03796 0.29 -0.4 4,010,937 - ECD_03796 0.29 -0.2 4,010,937 - ECD_03796 0.29 +0.4 4,011,032 - ECD_03796 0.43 -0.7 4,011,032 - ECD_03796 0.43 +0.4 4,011,038 + ECD_03796 0.44 -0.7 4,011,038 + ECD_03796 0.44 +1.7 4,011,038 + ECD_03796 0.44 -0.0 4,011,039 - ECD_03796 0.44 +0.5 4,011,039 - ECD_03796 0.44 -0.7 4,011,039 - ECD_03796 0.44 +0.3 4,011,072 + ECD_03796 0.49 +0.1 4,011,072 + ECD_03796 0.49 +0.2 4,011,073 - ECD_03796 0.49 -0.1 4,011,073 - ECD_03796 0.49 -0.1 4,011,116 + ECD_03796 0.55 +1.0 4,011,116 + ECD_03796 0.55 +0.4 4,011,164 - ECD_03796 0.62 -0.1 4,011,179 + ECD_03796 0.64 +0.1 4,011,179 + ECD_03796 0.64 -0.9 4,011,179 + ECD_03796 0.64 +0.3 4,011,179 + ECD_03796 0.64 +0.8 4,011,179 + ECD_03796 0.64 +0.2 4,011,179 + ECD_03796 0.64 -0.0 4,011,180 - ECD_03796 0.65 -1.1 4,011,180 - ECD_03796 0.65 +0.5 4,011,180 - ECD_03796 0.65 -0.4 4,011,180 - ECD_03796 0.65 -0.5 4,011,180 - ECD_03796 0.65 +0.0 4,011,181 + ECD_03796 0.65 +0.1 4,011,182 - ECD_03796 0.65 +0.8 4,011,283 + ECD_03796 0.80 +0.5 4,011,283 + ECD_03796 0.80 +1.0 4,011,283 + ECD_03796 0.80 +0.4 4,011,284 - ECD_03796 0.80 -0.2 4,011,440 - +0.2 4,011,510 + +0.4 4,011,511 - -0.3 4,011,526 - +0.2 4,011,535 + -0.8 4,011,536 - +0.5 4,011,537 + -0.6 4,011,687 + ECD_03797 0.12 -1.7 4,011,752 - ECD_03797 0.17 -1.2 4,011,761 - ECD_03797 0.17 -0.2 4,011,800 - ECD_03797 0.20 -0.7 4,012,010 - ECD_03797 0.35 -0.4 4,012,010 - ECD_03797 0.35 -1.8 4,012,325 - ECD_03797 0.58 -0.6 4,012,477 - ECD_03797 0.69 -1.1 4,012,531 - ECD_03797 0.73 -0.7 4,012,670 - ECD_03797 0.83 -0.2 4,012,670 - ECD_03797 0.83 -2.9 4,012,670 - ECD_03797 0.83 -1.8 4,012,704 - ECD_03797 0.86 -2.4 4,012,893 - -0.6 4,013,050 + ECD_03798 0.22 -1.0 4,013,304 - ECD_03798 0.59 -0.0 4,013,368 - ECD_03798 0.68 +0.1 4,013,405 - ECD_03798 0.73 -0.9 4,013,543 - +0.2 4,013,543 - -1.3 4,013,576 - -0.5 4,013,598 - +0.4 4,013,638 - +0.4 4,013,650 + -0.0 4,013,650 + +0.3 4,013,650 + +0.7 4,013,650 + -0.2 4,013,651 - -0.4 4,013,651 - +0.0 4,013,651 - -0.1 4,013,651 - -0.0 4,013,661 - -0.2 4,013,695 - +0.1 4,013,749 + +0.7 4,013,749 + -0.9 4,013,749 + -0.9 4,013,749 + -1.2 4,013,749 + +0.1 4,013,749 + -0.0 4,013,749 + +0.3 4,013,750 - +0.5 4,013,750 - +0.2 4,013,750 - +0.3 4,013,753 + +0.4 4,013,794 + ECD_03799 0.10 +0.3 4,013,794 + ECD_03799 0.10 +0.1 4,013,849 + ECD_03799 0.21 +0.3 4,013,861 + ECD_03799 0.24 -0.3 4,013,861 + ECD_03799 0.24 -1.3 4,013,873 + ECD_03799 0.26 -0.2 4,013,874 - ECD_03799 0.26 +0.1 4,013,874 - ECD_03799 0.26 -0.5 4,013,874 - ECD_03799 0.26 +0.4 4,013,874 - ECD_03799 0.26 +0.5 4,013,887 + ECD_03799 0.29 -0.9 4,013,887 + ECD_03799 0.29 +0.3 4,013,887 + ECD_03799 0.29 +0.2 4,013,888 - ECD_03799 0.29 -0.1
Or see this region's nucleotide sequence