Strain Fitness in Escherichia coli BL21 around ECD_03797

Experiment: Control_TnN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03795 and ECD_03796 are separated by 148 nucleotidesECD_03796 and ECD_03797 are separated by 105 nucleotidesECD_03797 and ECD_03798 overlap by 4 nucleotidesECD_03798 and ECD_03799 are separated by 149 nucleotides ECD_03795: ECD_03795 - 2-keto-3-deoxy-D-gluconate transporter, at 4,009,612 to 4,010,595 _03795 ECD_03796: ECD_03796 - 6-N-hydroxylaminopurine resistance protein, at 4,010,744 to 4,011,418 _03796 ECD_03797: ECD_03797 - sensory histidine kinase in two-component regulatory system with CpxR, at 4,011,524 to 4,012,897 _03797 ECD_03798: ECD_03798 - response regulator in two-component regulatory system with CpxA, at 4,012,894 to 4,013,592 _03798 ECD_03799: ECD_03799 - inhibitor of the cpx response; periplasmic adaptor protein, at 4,013,742 to 4,014,242 _03799 Position (kb) 4011 4012 4013Strain fitness (log2 ratio) -3 -2 -1 0 1at 4010.533 kb on - strandat 4010.544 kb on + strandat 4010.544 kb on + strandat 4010.545 kb on - strandat 4010.545 kb on - strandat 4010.629 kb on + strandat 4010.667 kb on + strandat 4010.668 kb on - strandat 4010.672 kb on - strandat 4010.697 kb on - strandat 4010.701 kb on + strandat 4010.763 kb on + strandat 4010.763 kb on + strandat 4010.764 kb on - strandat 4010.764 kb on - strandat 4010.764 kb on - strandat 4010.764 kb on - strandat 4010.764 kb on - strandat 4010.765 kb on + strandat 4010.765 kb on + strandat 4010.765 kb on + strandat 4010.765 kb on + strandat 4010.766 kb on - strandat 4010.816 kb on - strand, within ECD_03796at 4010.937 kb on - strand, within ECD_03796at 4010.937 kb on - strand, within ECD_03796at 4010.937 kb on - strand, within ECD_03796at 4011.032 kb on - strand, within ECD_03796at 4011.032 kb on - strand, within ECD_03796at 4011.038 kb on + strand, within ECD_03796at 4011.038 kb on + strand, within ECD_03796at 4011.038 kb on + strand, within ECD_03796at 4011.039 kb on - strand, within ECD_03796at 4011.039 kb on - strand, within ECD_03796at 4011.039 kb on - strand, within ECD_03796at 4011.072 kb on + strand, within ECD_03796at 4011.072 kb on + strand, within ECD_03796at 4011.073 kb on - strand, within ECD_03796at 4011.073 kb on - strand, within ECD_03796at 4011.116 kb on + strand, within ECD_03796at 4011.116 kb on + strand, within ECD_03796at 4011.164 kb on - strand, within ECD_03796at 4011.179 kb on + strand, within ECD_03796at 4011.179 kb on + strand, within ECD_03796at 4011.179 kb on + strand, within ECD_03796at 4011.179 kb on + strand, within ECD_03796at 4011.179 kb on + strand, within ECD_03796at 4011.179 kb on + strand, within ECD_03796at 4011.180 kb on - strand, within ECD_03796at 4011.180 kb on - strand, within ECD_03796at 4011.180 kb on - strand, within ECD_03796at 4011.180 kb on - strand, within ECD_03796at 4011.180 kb on - strand, within ECD_03796at 4011.181 kb on + strand, within ECD_03796at 4011.182 kb on - strand, within ECD_03796at 4011.283 kb on + strand, within ECD_03796at 4011.283 kb on + strand, within ECD_03796at 4011.283 kb on + strand, within ECD_03796at 4011.284 kb on - strand, within ECD_03796at 4011.440 kb on - strandat 4011.510 kb on + strandat 4011.511 kb on - strandat 4011.526 kb on - strandat 4011.535 kb on + strandat 4011.536 kb on - strandat 4011.537 kb on + strandat 4011.687 kb on + strand, within ECD_03797at 4011.752 kb on - strand, within ECD_03797at 4011.761 kb on - strand, within ECD_03797at 4011.800 kb on - strand, within ECD_03797at 4012.010 kb on - strand, within ECD_03797at 4012.010 kb on - strand, within ECD_03797at 4012.325 kb on - strand, within ECD_03797at 4012.477 kb on - strand, within ECD_03797at 4012.531 kb on - strand, within ECD_03797at 4012.670 kb on - strand, within ECD_03797at 4012.670 kb on - strand, within ECD_03797at 4012.670 kb on - strand, within ECD_03797at 4012.704 kb on - strand, within ECD_03797at 4012.893 kb on - strandat 4013.050 kb on + strand, within ECD_03798at 4013.304 kb on - strand, within ECD_03798at 4013.368 kb on - strand, within ECD_03798at 4013.405 kb on - strand, within ECD_03798at 4013.543 kb on - strandat 4013.543 kb on - strandat 4013.576 kb on - strandat 4013.598 kb on - strandat 4013.638 kb on - strandat 4013.650 kb on + strandat 4013.650 kb on + strandat 4013.650 kb on + strandat 4013.650 kb on + strandat 4013.651 kb on - strandat 4013.651 kb on - strandat 4013.651 kb on - strandat 4013.651 kb on - strandat 4013.661 kb on - strandat 4013.695 kb on - strandat 4013.749 kb on + strandat 4013.749 kb on + strandat 4013.749 kb on + strandat 4013.749 kb on + strandat 4013.749 kb on + strandat 4013.749 kb on + strandat 4013.749 kb on + strandat 4013.750 kb on - strandat 4013.750 kb on - strandat 4013.750 kb on - strandat 4013.753 kb on + strandat 4013.794 kb on + strand, within ECD_03799at 4013.794 kb on + strand, within ECD_03799at 4013.849 kb on + strand, within ECD_03799at 4013.861 kb on + strand, within ECD_03799at 4013.861 kb on + strand, within ECD_03799at 4013.873 kb on + strand, within ECD_03799at 4013.874 kb on - strand, within ECD_03799at 4013.874 kb on - strand, within ECD_03799at 4013.874 kb on - strand, within ECD_03799at 4013.874 kb on - strand, within ECD_03799at 4013.887 kb on + strand, within ECD_03799at 4013.887 kb on + strand, within ECD_03799at 4013.887 kb on + strand, within ECD_03799at 4013.888 kb on - strand, within ECD_03799

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_TnN
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4,010,533 - +0.4
4,010,544 + -2.0
4,010,544 + -0.5
4,010,545 - +0.6
4,010,545 - +0.3
4,010,629 + +0.6
4,010,667 + -0.1
4,010,668 - -1.5
4,010,672 - +0.6
4,010,697 - +0.0
4,010,701 + -0.7
4,010,763 + +0.0
4,010,763 + +0.9
4,010,764 - +0.5
4,010,764 - +0.2
4,010,764 - -0.3
4,010,764 - +0.1
4,010,764 - -0.2
4,010,765 + -0.6
4,010,765 + -0.0
4,010,765 + -0.4
4,010,765 + -0.2
4,010,766 - -0.6
4,010,816 - ECD_03796 0.11 +0.3
4,010,937 - ECD_03796 0.29 -0.4
4,010,937 - ECD_03796 0.29 -0.2
4,010,937 - ECD_03796 0.29 +0.4
4,011,032 - ECD_03796 0.43 -0.7
4,011,032 - ECD_03796 0.43 +0.4
4,011,038 + ECD_03796 0.44 -0.7
4,011,038 + ECD_03796 0.44 +1.7
4,011,038 + ECD_03796 0.44 -0.0
4,011,039 - ECD_03796 0.44 +0.5
4,011,039 - ECD_03796 0.44 -0.7
4,011,039 - ECD_03796 0.44 +0.3
4,011,072 + ECD_03796 0.49 +0.1
4,011,072 + ECD_03796 0.49 +0.2
4,011,073 - ECD_03796 0.49 -0.1
4,011,073 - ECD_03796 0.49 -0.1
4,011,116 + ECD_03796 0.55 +1.0
4,011,116 + ECD_03796 0.55 +0.4
4,011,164 - ECD_03796 0.62 -0.1
4,011,179 + ECD_03796 0.64 +0.1
4,011,179 + ECD_03796 0.64 -0.9
4,011,179 + ECD_03796 0.64 +0.3
4,011,179 + ECD_03796 0.64 +0.8
4,011,179 + ECD_03796 0.64 +0.2
4,011,179 + ECD_03796 0.64 -0.0
4,011,180 - ECD_03796 0.65 -1.1
4,011,180 - ECD_03796 0.65 +0.5
4,011,180 - ECD_03796 0.65 -0.4
4,011,180 - ECD_03796 0.65 -0.5
4,011,180 - ECD_03796 0.65 +0.0
4,011,181 + ECD_03796 0.65 +0.1
4,011,182 - ECD_03796 0.65 +0.8
4,011,283 + ECD_03796 0.80 +0.5
4,011,283 + ECD_03796 0.80 +1.0
4,011,283 + ECD_03796 0.80 +0.4
4,011,284 - ECD_03796 0.80 -0.2
4,011,440 - +0.2
4,011,510 + +0.4
4,011,511 - -0.3
4,011,526 - +0.2
4,011,535 + -0.8
4,011,536 - +0.5
4,011,537 + -0.6
4,011,687 + ECD_03797 0.12 -1.7
4,011,752 - ECD_03797 0.17 -1.2
4,011,761 - ECD_03797 0.17 -0.2
4,011,800 - ECD_03797 0.20 -0.7
4,012,010 - ECD_03797 0.35 -0.4
4,012,010 - ECD_03797 0.35 -1.8
4,012,325 - ECD_03797 0.58 -0.6
4,012,477 - ECD_03797 0.69 -1.1
4,012,531 - ECD_03797 0.73 -0.7
4,012,670 - ECD_03797 0.83 -0.2
4,012,670 - ECD_03797 0.83 -2.9
4,012,670 - ECD_03797 0.83 -1.8
4,012,704 - ECD_03797 0.86 -2.4
4,012,893 - -0.6
4,013,050 + ECD_03798 0.22 -1.0
4,013,304 - ECD_03798 0.59 -0.0
4,013,368 - ECD_03798 0.68 +0.1
4,013,405 - ECD_03798 0.73 -0.9
4,013,543 - +0.2
4,013,543 - -1.3
4,013,576 - -0.5
4,013,598 - +0.4
4,013,638 - +0.4
4,013,650 + -0.0
4,013,650 + +0.3
4,013,650 + +0.7
4,013,650 + -0.2
4,013,651 - -0.4
4,013,651 - +0.0
4,013,651 - -0.1
4,013,651 - -0.0
4,013,661 - -0.2
4,013,695 - +0.1
4,013,749 + +0.7
4,013,749 + -0.9
4,013,749 + -0.9
4,013,749 + -1.2
4,013,749 + +0.1
4,013,749 + -0.0
4,013,749 + +0.3
4,013,750 - +0.5
4,013,750 - +0.2
4,013,750 - +0.3
4,013,753 + +0.4
4,013,794 + ECD_03799 0.10 +0.3
4,013,794 + ECD_03799 0.10 +0.1
4,013,849 + ECD_03799 0.21 +0.3
4,013,861 + ECD_03799 0.24 -0.3
4,013,861 + ECD_03799 0.24 -1.3
4,013,873 + ECD_03799 0.26 -0.2
4,013,874 - ECD_03799 0.26 +0.1
4,013,874 - ECD_03799 0.26 -0.5
4,013,874 - ECD_03799 0.26 +0.4
4,013,874 - ECD_03799 0.26 +0.5
4,013,887 + ECD_03799 0.29 -0.9
4,013,887 + ECD_03799 0.29 +0.3
4,013,887 + ECD_03799 0.29 +0.2
4,013,888 - ECD_03799 0.29 -0.1

Or see this region's nucleotide sequence