Strain Fitness in Escherichia coli BL21 around ECD_03786

Experiment: Control_TnN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03784 and ECD_03785 are separated by 10 nucleotidesECD_03785 and ECD_03786 are separated by 476 nucleotidesECD_03786 and ECD_03787 are separated by 40 nucleotidesECD_03787 and ECD_03788 are separated by 9 nucleotides ECD_03784: ECD_03784 - putative PTS enzyme, IIB component/IIC component, at 3,997,502 to 3,998,953 _03784 ECD_03785: ECD_03785 - putative enzyme IIA component of PTS, at 3,998,964 to 3,999,410 _03785 ECD_03786: ECD_03786 - putative glycoporin, at 3,999,887 to 4,001,281 _03786 ECD_03787: ECD_03787 - L-rhamnose mutarotase, at 4,001,322 to 4,001,636 _03787 ECD_03788: ECD_03788 - rhamnulose-1-phosphate aldolase, at 4,001,646 to 4,002,470 _03788 Position (kb) 3999 4000 4001 4002Strain fitness (log2 ratio) -3 -2 -1 0 1at 3998.892 kb on + strandat 3998.892 kb on + strandat 3998.892 kb on + strandat 3998.892 kb on + strandat 3998.893 kb on - strandat 3998.893 kb on - strandat 3998.893 kb on - strandat 3998.893 kb on - strandat 3998.935 kb on + strandat 3998.936 kb on - strandat 3998.939 kb on + strandat 3998.940 kb on - strandat 3998.940 kb on - strandat 3998.986 kb on - strandat 3999.184 kb on - strand, within ECD_03785at 3999.187 kb on - strand, within ECD_03785at 3999.399 kb on - strandat 3999.934 kb on + strandat 3999.934 kb on + strandat 4000.044 kb on + strand, within ECD_03786at 4000.106 kb on - strand, within ECD_03786at 4000.163 kb on - strand, within ECD_03786at 4000.313 kb on - strand, within ECD_03786at 4000.390 kb on + strand, within ECD_03786at 4000.462 kb on - strand, within ECD_03786at 4000.483 kb on + strand, within ECD_03786at 4000.529 kb on - strand, within ECD_03786at 4000.564 kb on + strand, within ECD_03786at 4000.565 kb on - strand, within ECD_03786at 4000.568 kb on + strand, within ECD_03786at 4000.568 kb on + strand, within ECD_03786at 4000.570 kb on + strand, within ECD_03786at 4000.683 kb on + strand, within ECD_03786at 4000.685 kb on + strand, within ECD_03786at 4000.832 kb on - strand, within ECD_03786at 4000.883 kb on - strand, within ECD_03786at 4000.963 kb on + strand, within ECD_03786at 4001.024 kb on + strand, within ECD_03786at 4001.026 kb on + strand, within ECD_03786at 4001.030 kb on + strand, within ECD_03786at 4001.132 kb on + strand, within ECD_03786at 4001.133 kb on - strand, within ECD_03786at 4001.170 kb on + strandat 4001.174 kb on + strandat 4001.186 kb on + strandat 4001.187 kb on - strandat 4001.187 kb on - strandat 4001.189 kb on + strandat 4001.189 kb on + strandat 4001.189 kb on + strandat 4001.190 kb on - strandat 4001.323 kb on + strandat 4001.323 kb on + strandat 4001.333 kb on - strandat 4001.333 kb on - strandat 4001.333 kb on - strandat 4001.379 kb on - strand, within ECD_03787at 4001.387 kb on + strand, within ECD_03787at 4001.387 kb on + strand, within ECD_03787at 4001.399 kb on + strand, within ECD_03787at 4001.400 kb on - strand, within ECD_03787at 4001.400 kb on - strand, within ECD_03787at 4001.401 kb on + strand, within ECD_03787at 4001.402 kb on - strand, within ECD_03787at 4001.402 kb on - strand, within ECD_03787at 4001.402 kb on - strand, within ECD_03787at 4001.402 kb on - strand, within ECD_03787at 4001.402 kb on - strand, within ECD_03787at 4001.470 kb on - strand, within ECD_03787at 4001.490 kb on - strand, within ECD_03787at 4001.519 kb on + strand, within ECD_03787at 4001.585 kb on - strand, within ECD_03787at 4001.585 kb on - strand, within ECD_03787at 4001.585 kb on - strand, within ECD_03787at 4001.647 kb on + strandat 4001.647 kb on + strandat 4001.676 kb on - strandat 4001.676 kb on - strandat 4001.747 kb on - strand, within ECD_03788at 4001.758 kb on - strand, within ECD_03788at 4001.760 kb on + strand, within ECD_03788at 4001.760 kb on + strand, within ECD_03788at 4001.760 kb on + strand, within ECD_03788at 4001.760 kb on + strand, within ECD_03788at 4001.760 kb on + strand, within ECD_03788at 4001.761 kb on - strand, within ECD_03788at 4001.761 kb on - strand, within ECD_03788at 4001.761 kb on - strand, within ECD_03788at 4001.790 kb on + strand, within ECD_03788at 4001.791 kb on - strand, within ECD_03788at 4002.013 kb on - strand, within ECD_03788at 4002.013 kb on - strand, within ECD_03788at 4002.016 kb on + strand, within ECD_03788at 4002.016 kb on + strand, within ECD_03788at 4002.016 kb on + strand, within ECD_03788at 4002.016 kb on + strand, within ECD_03788at 4002.016 kb on + strand, within ECD_03788at 4002.016 kb on + strand, within ECD_03788at 4002.016 kb on + strand, within ECD_03788at 4002.016 kb on + strand, within ECD_03788at 4002.016 kb on + strand, within ECD_03788at 4002.017 kb on - strand, within ECD_03788at 4002.017 kb on - strand, within ECD_03788at 4002.017 kb on - strand, within ECD_03788at 4002.017 kb on - strand, within ECD_03788at 4002.017 kb on - strand, within ECD_03788at 4002.161 kb on + strand, within ECD_03788at 4002.162 kb on - strand, within ECD_03788at 4002.166 kb on + strand, within ECD_03788at 4002.193 kb on - strand, within ECD_03788at 4002.201 kb on + strand, within ECD_03788at 4002.202 kb on - strand, within ECD_03788at 4002.206 kb on + strand, within ECD_03788at 4002.207 kb on - strand, within ECD_03788at 4002.207 kb on - strand, within ECD_03788at 4002.261 kb on - strand, within ECD_03788at 4002.269 kb on + strand, within ECD_03788at 4002.269 kb on + strand, within ECD_03788at 4002.270 kb on - strand, within ECD_03788

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_TnN
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3,998,892 + +0.5
3,998,892 + -0.7
3,998,892 + -0.1
3,998,892 + -1.0
3,998,893 - -0.8
3,998,893 - +0.6
3,998,893 - +0.2
3,998,893 - +0.0
3,998,935 + +0.3
3,998,936 - +0.2
3,998,939 + +0.8
3,998,940 - +0.1
3,998,940 - -0.0
3,998,986 - -0.5
3,999,184 - ECD_03785 0.49 +0.2
3,999,187 - ECD_03785 0.50 -0.3
3,999,399 - -0.4
3,999,934 + -0.4
3,999,934 + -0.1
4,000,044 + ECD_03786 0.11 -0.3
4,000,106 - ECD_03786 0.16 -0.1
4,000,163 - ECD_03786 0.20 +0.3
4,000,313 - ECD_03786 0.31 +0.6
4,000,390 + ECD_03786 0.36 +0.5
4,000,462 - ECD_03786 0.41 +0.0
4,000,483 + ECD_03786 0.43 +0.2
4,000,529 - ECD_03786 0.46 +0.2
4,000,564 + ECD_03786 0.49 -0.1
4,000,565 - ECD_03786 0.49 -0.2
4,000,568 + ECD_03786 0.49 -0.6
4,000,568 + ECD_03786 0.49 -0.1
4,000,570 + ECD_03786 0.49 +0.4
4,000,683 + ECD_03786 0.57 -0.3
4,000,685 + ECD_03786 0.57 -0.0
4,000,832 - ECD_03786 0.68 -1.6
4,000,883 - ECD_03786 0.71 +0.3
4,000,963 + ECD_03786 0.77 +0.2
4,001,024 + ECD_03786 0.82 -0.7
4,001,026 + ECD_03786 0.82 +0.2
4,001,030 + ECD_03786 0.82 -0.7
4,001,132 + ECD_03786 0.89 -1.2
4,001,133 - ECD_03786 0.89 -0.5
4,001,170 + -0.0
4,001,174 + +0.1
4,001,186 + +0.0
4,001,187 - -0.9
4,001,187 - +0.3
4,001,189 + +0.0
4,001,189 + -0.2
4,001,189 + -0.1
4,001,190 - +1.2
4,001,323 + +0.6
4,001,323 + +0.0
4,001,333 - +0.1
4,001,333 - -0.6
4,001,333 - -0.1
4,001,379 - ECD_03787 0.18 -0.5
4,001,387 + ECD_03787 0.21 +0.2
4,001,387 + ECD_03787 0.21 -1.5
4,001,399 + ECD_03787 0.24 +0.1
4,001,400 - ECD_03787 0.25 -0.6
4,001,400 - ECD_03787 0.25 +0.6
4,001,401 + ECD_03787 0.25 -0.2
4,001,402 - ECD_03787 0.25 -0.3
4,001,402 - ECD_03787 0.25 +0.4
4,001,402 - ECD_03787 0.25 +0.8
4,001,402 - ECD_03787 0.25 -0.4
4,001,402 - ECD_03787 0.25 +0.3
4,001,470 - ECD_03787 0.47 -0.6
4,001,490 - ECD_03787 0.53 -1.1
4,001,519 + ECD_03787 0.63 +1.0
4,001,585 - ECD_03787 0.83 +1.4
4,001,585 - ECD_03787 0.83 -0.3
4,001,585 - ECD_03787 0.83 +0.6
4,001,647 + -0.2
4,001,647 + -0.6
4,001,676 - -0.3
4,001,676 - -0.1
4,001,747 - ECD_03788 0.12 +0.4
4,001,758 - ECD_03788 0.14 +0.4
4,001,760 + ECD_03788 0.14 -0.2
4,001,760 + ECD_03788 0.14 -0.2
4,001,760 + ECD_03788 0.14 +0.1
4,001,760 + ECD_03788 0.14 +0.2
4,001,760 + ECD_03788 0.14 -0.4
4,001,761 - ECD_03788 0.14 -0.2
4,001,761 - ECD_03788 0.14 -0.2
4,001,761 - ECD_03788 0.14 +0.2
4,001,790 + ECD_03788 0.17 +0.4
4,001,791 - ECD_03788 0.18 -0.9
4,002,013 - ECD_03788 0.44 +0.2
4,002,013 - ECD_03788 0.44 +0.6
4,002,016 + ECD_03788 0.45 +0.5
4,002,016 + ECD_03788 0.45 +0.3
4,002,016 + ECD_03788 0.45 -0.0
4,002,016 + ECD_03788 0.45 -1.1
4,002,016 + ECD_03788 0.45 +0.1
4,002,016 + ECD_03788 0.45 +0.3
4,002,016 + ECD_03788 0.45 -0.2
4,002,016 + ECD_03788 0.45 +0.4
4,002,016 + ECD_03788 0.45 -0.1
4,002,017 - ECD_03788 0.45 +0.7
4,002,017 - ECD_03788 0.45 -0.5
4,002,017 - ECD_03788 0.45 +0.4
4,002,017 - ECD_03788 0.45 -0.6
4,002,017 - ECD_03788 0.45 -0.0
4,002,161 + ECD_03788 0.62 -0.4
4,002,162 - ECD_03788 0.63 +0.3
4,002,166 + ECD_03788 0.63 +0.1
4,002,193 - ECD_03788 0.66 -2.8
4,002,201 + ECD_03788 0.67 +0.5
4,002,202 - ECD_03788 0.67 -1.5
4,002,206 + ECD_03788 0.68 +0.9
4,002,207 - ECD_03788 0.68 +0.3
4,002,207 - ECD_03788 0.68 +0.3
4,002,261 - ECD_03788 0.75 -0.2
4,002,269 + ECD_03788 0.76 -0.6
4,002,269 + ECD_03788 0.76 -0.5
4,002,270 - ECD_03788 0.76 +0.1

Or see this region's nucleotide sequence