Experiment: Control_TnN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03784 and ECD_03785 are separated by 10 nucleotides ECD_03785 and ECD_03786 are separated by 476 nucleotides ECD_03786 and ECD_03787 are separated by 40 nucleotides ECD_03787 and ECD_03788 are separated by 9 nucleotides
ECD_03784: ECD_03784 - putative PTS enzyme, IIB component/IIC component, at 3,997,502 to 3,998,953
_03784
ECD_03785: ECD_03785 - putative enzyme IIA component of PTS, at 3,998,964 to 3,999,410
_03785
ECD_03786: ECD_03786 - putative glycoporin, at 3,999,887 to 4,001,281
_03786
ECD_03787: ECD_03787 - L-rhamnose mutarotase, at 4,001,322 to 4,001,636
_03787
ECD_03788: ECD_03788 - rhamnulose-1-phosphate aldolase, at 4,001,646 to 4,002,470
_03788
Position (kb)
3999
4000
4001
4002 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3998.892 kb on + strand at 3998.892 kb on + strand at 3998.892 kb on + strand at 3998.892 kb on + strand at 3998.893 kb on - strand at 3998.893 kb on - strand at 3998.893 kb on - strand at 3998.893 kb on - strand at 3998.935 kb on + strand at 3998.936 kb on - strand at 3998.939 kb on + strand at 3998.940 kb on - strand at 3998.940 kb on - strand at 3998.986 kb on - strand at 3999.184 kb on - strand, within ECD_03785 at 3999.187 kb on - strand, within ECD_03785 at 3999.399 kb on - strand at 3999.934 kb on + strand at 3999.934 kb on + strand at 4000.044 kb on + strand, within ECD_03786 at 4000.106 kb on - strand, within ECD_03786 at 4000.163 kb on - strand, within ECD_03786 at 4000.313 kb on - strand, within ECD_03786 at 4000.390 kb on + strand, within ECD_03786 at 4000.462 kb on - strand, within ECD_03786 at 4000.483 kb on + strand, within ECD_03786 at 4000.529 kb on - strand, within ECD_03786 at 4000.564 kb on + strand, within ECD_03786 at 4000.565 kb on - strand, within ECD_03786 at 4000.568 kb on + strand, within ECD_03786 at 4000.568 kb on + strand, within ECD_03786 at 4000.570 kb on + strand, within ECD_03786 at 4000.683 kb on + strand, within ECD_03786 at 4000.685 kb on + strand, within ECD_03786 at 4000.832 kb on - strand, within ECD_03786 at 4000.883 kb on - strand, within ECD_03786 at 4000.963 kb on + strand, within ECD_03786 at 4001.024 kb on + strand, within ECD_03786 at 4001.026 kb on + strand, within ECD_03786 at 4001.030 kb on + strand, within ECD_03786 at 4001.132 kb on + strand, within ECD_03786 at 4001.133 kb on - strand, within ECD_03786 at 4001.170 kb on + strand at 4001.174 kb on + strand at 4001.186 kb on + strand at 4001.187 kb on - strand at 4001.187 kb on - strand at 4001.189 kb on + strand at 4001.189 kb on + strand at 4001.189 kb on + strand at 4001.190 kb on - strand at 4001.323 kb on + strand at 4001.323 kb on + strand at 4001.333 kb on - strand at 4001.333 kb on - strand at 4001.333 kb on - strand at 4001.379 kb on - strand, within ECD_03787 at 4001.387 kb on + strand, within ECD_03787 at 4001.387 kb on + strand, within ECD_03787 at 4001.399 kb on + strand, within ECD_03787 at 4001.400 kb on - strand, within ECD_03787 at 4001.400 kb on - strand, within ECD_03787 at 4001.401 kb on + strand, within ECD_03787 at 4001.402 kb on - strand, within ECD_03787 at 4001.402 kb on - strand, within ECD_03787 at 4001.402 kb on - strand, within ECD_03787 at 4001.402 kb on - strand, within ECD_03787 at 4001.402 kb on - strand, within ECD_03787 at 4001.470 kb on - strand, within ECD_03787 at 4001.490 kb on - strand, within ECD_03787 at 4001.519 kb on + strand, within ECD_03787 at 4001.585 kb on - strand, within ECD_03787 at 4001.585 kb on - strand, within ECD_03787 at 4001.585 kb on - strand, within ECD_03787 at 4001.647 kb on + strand at 4001.647 kb on + strand at 4001.676 kb on - strand at 4001.676 kb on - strand at 4001.747 kb on - strand, within ECD_03788 at 4001.758 kb on - strand, within ECD_03788 at 4001.760 kb on + strand, within ECD_03788 at 4001.760 kb on + strand, within ECD_03788 at 4001.760 kb on + strand, within ECD_03788 at 4001.760 kb on + strand, within ECD_03788 at 4001.760 kb on + strand, within ECD_03788 at 4001.761 kb on - strand, within ECD_03788 at 4001.761 kb on - strand, within ECD_03788 at 4001.761 kb on - strand, within ECD_03788 at 4001.790 kb on + strand, within ECD_03788 at 4001.791 kb on - strand, within ECD_03788 at 4002.013 kb on - strand, within ECD_03788 at 4002.013 kb on - strand, within ECD_03788 at 4002.016 kb on + strand, within ECD_03788 at 4002.016 kb on + strand, within ECD_03788 at 4002.016 kb on + strand, within ECD_03788 at 4002.016 kb on + strand, within ECD_03788 at 4002.016 kb on + strand, within ECD_03788 at 4002.016 kb on + strand, within ECD_03788 at 4002.016 kb on + strand, within ECD_03788 at 4002.016 kb on + strand, within ECD_03788 at 4002.016 kb on + strand, within ECD_03788 at 4002.017 kb on - strand, within ECD_03788 at 4002.017 kb on - strand, within ECD_03788 at 4002.017 kb on - strand, within ECD_03788 at 4002.017 kb on - strand, within ECD_03788 at 4002.017 kb on - strand, within ECD_03788 at 4002.161 kb on + strand, within ECD_03788 at 4002.162 kb on - strand, within ECD_03788 at 4002.166 kb on + strand, within ECD_03788 at 4002.193 kb on - strand, within ECD_03788 at 4002.201 kb on + strand, within ECD_03788 at 4002.202 kb on - strand, within ECD_03788 at 4002.206 kb on + strand, within ECD_03788 at 4002.207 kb on - strand, within ECD_03788 at 4002.207 kb on - strand, within ECD_03788 at 4002.261 kb on - strand, within ECD_03788 at 4002.269 kb on + strand, within ECD_03788 at 4002.269 kb on + strand, within ECD_03788 at 4002.270 kb on - strand, within ECD_03788
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnN remove 3,998,892 + +0.5 3,998,892 + -0.7 3,998,892 + -0.1 3,998,892 + -1.0 3,998,893 - -0.8 3,998,893 - +0.6 3,998,893 - +0.2 3,998,893 - +0.0 3,998,935 + +0.3 3,998,936 - +0.2 3,998,939 + +0.8 3,998,940 - +0.1 3,998,940 - -0.0 3,998,986 - -0.5 3,999,184 - ECD_03785 0.49 +0.2 3,999,187 - ECD_03785 0.50 -0.3 3,999,399 - -0.4 3,999,934 + -0.4 3,999,934 + -0.1 4,000,044 + ECD_03786 0.11 -0.3 4,000,106 - ECD_03786 0.16 -0.1 4,000,163 - ECD_03786 0.20 +0.3 4,000,313 - ECD_03786 0.31 +0.6 4,000,390 + ECD_03786 0.36 +0.5 4,000,462 - ECD_03786 0.41 +0.0 4,000,483 + ECD_03786 0.43 +0.2 4,000,529 - ECD_03786 0.46 +0.2 4,000,564 + ECD_03786 0.49 -0.1 4,000,565 - ECD_03786 0.49 -0.2 4,000,568 + ECD_03786 0.49 -0.6 4,000,568 + ECD_03786 0.49 -0.1 4,000,570 + ECD_03786 0.49 +0.4 4,000,683 + ECD_03786 0.57 -0.3 4,000,685 + ECD_03786 0.57 -0.0 4,000,832 - ECD_03786 0.68 -1.6 4,000,883 - ECD_03786 0.71 +0.3 4,000,963 + ECD_03786 0.77 +0.2 4,001,024 + ECD_03786 0.82 -0.7 4,001,026 + ECD_03786 0.82 +0.2 4,001,030 + ECD_03786 0.82 -0.7 4,001,132 + ECD_03786 0.89 -1.2 4,001,133 - ECD_03786 0.89 -0.5 4,001,170 + -0.0 4,001,174 + +0.1 4,001,186 + +0.0 4,001,187 - -0.9 4,001,187 - +0.3 4,001,189 + +0.0 4,001,189 + -0.2 4,001,189 + -0.1 4,001,190 - +1.2 4,001,323 + +0.6 4,001,323 + +0.0 4,001,333 - +0.1 4,001,333 - -0.6 4,001,333 - -0.1 4,001,379 - ECD_03787 0.18 -0.5 4,001,387 + ECD_03787 0.21 +0.2 4,001,387 + ECD_03787 0.21 -1.5 4,001,399 + ECD_03787 0.24 +0.1 4,001,400 - ECD_03787 0.25 -0.6 4,001,400 - ECD_03787 0.25 +0.6 4,001,401 + ECD_03787 0.25 -0.2 4,001,402 - ECD_03787 0.25 -0.3 4,001,402 - ECD_03787 0.25 +0.4 4,001,402 - ECD_03787 0.25 +0.8 4,001,402 - ECD_03787 0.25 -0.4 4,001,402 - ECD_03787 0.25 +0.3 4,001,470 - ECD_03787 0.47 -0.6 4,001,490 - ECD_03787 0.53 -1.1 4,001,519 + ECD_03787 0.63 +1.0 4,001,585 - ECD_03787 0.83 +1.4 4,001,585 - ECD_03787 0.83 -0.3 4,001,585 - ECD_03787 0.83 +0.6 4,001,647 + -0.2 4,001,647 + -0.6 4,001,676 - -0.3 4,001,676 - -0.1 4,001,747 - ECD_03788 0.12 +0.4 4,001,758 - ECD_03788 0.14 +0.4 4,001,760 + ECD_03788 0.14 -0.2 4,001,760 + ECD_03788 0.14 -0.2 4,001,760 + ECD_03788 0.14 +0.1 4,001,760 + ECD_03788 0.14 +0.2 4,001,760 + ECD_03788 0.14 -0.4 4,001,761 - ECD_03788 0.14 -0.2 4,001,761 - ECD_03788 0.14 -0.2 4,001,761 - ECD_03788 0.14 +0.2 4,001,790 + ECD_03788 0.17 +0.4 4,001,791 - ECD_03788 0.18 -0.9 4,002,013 - ECD_03788 0.44 +0.2 4,002,013 - ECD_03788 0.44 +0.6 4,002,016 + ECD_03788 0.45 +0.5 4,002,016 + ECD_03788 0.45 +0.3 4,002,016 + ECD_03788 0.45 -0.0 4,002,016 + ECD_03788 0.45 -1.1 4,002,016 + ECD_03788 0.45 +0.1 4,002,016 + ECD_03788 0.45 +0.3 4,002,016 + ECD_03788 0.45 -0.2 4,002,016 + ECD_03788 0.45 +0.4 4,002,016 + ECD_03788 0.45 -0.1 4,002,017 - ECD_03788 0.45 +0.7 4,002,017 - ECD_03788 0.45 -0.5 4,002,017 - ECD_03788 0.45 +0.4 4,002,017 - ECD_03788 0.45 -0.6 4,002,017 - ECD_03788 0.45 -0.0 4,002,161 + ECD_03788 0.62 -0.4 4,002,162 - ECD_03788 0.63 +0.3 4,002,166 + ECD_03788 0.63 +0.1 4,002,193 - ECD_03788 0.66 -2.8 4,002,201 + ECD_03788 0.67 +0.5 4,002,202 - ECD_03788 0.67 -1.5 4,002,206 + ECD_03788 0.68 +0.9 4,002,207 - ECD_03788 0.68 +0.3 4,002,207 - ECD_03788 0.68 +0.3 4,002,261 - ECD_03788 0.75 -0.2 4,002,269 + ECD_03788 0.76 -0.6 4,002,269 + ECD_03788 0.76 -0.5 4,002,270 - ECD_03788 0.76 +0.1
Or see this region's nucleotide sequence