Experiment: Control_TnN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03780 and ECD_03781 are separated by 152 nucleotides ECD_03781 and ECD_03782 are separated by 49 nucleotides
ECD_03780: ECD_03780 - formate dehydrogenase formation protein, at 3,992,603 to 3,993,436
_03780
ECD_03781: ECD_03781 - DUF3829 family lipoprotein, at 3,993,589 to 3,994,644
_03781
ECD_03782: ECD_03782 - putative frv operon regulator; contains a PTS EIIA domain, at 3,994,694 to 3,996,442
_03782
Position (kb)
3993
3994
3995 Strain fitness (log2 ratio)
-2
-1
0
1 at 3992.595 kb on - strand at 3992.644 kb on + strand at 3992.688 kb on + strand, within ECD_03780 at 3992.688 kb on + strand, within ECD_03780 at 3992.741 kb on + strand, within ECD_03780 at 3992.742 kb on - strand, within ECD_03780 at 3992.742 kb on - strand, within ECD_03780 at 3992.792 kb on + strand, within ECD_03780 at 3992.875 kb on + strand, within ECD_03780 at 3992.956 kb on + strand, within ECD_03780 at 3992.970 kb on + strand, within ECD_03780 at 3992.989 kb on + strand, within ECD_03780 at 3992.989 kb on + strand, within ECD_03780 at 3992.990 kb on - strand, within ECD_03780 at 3992.990 kb on - strand, within ECD_03780 at 3992.990 kb on - strand, within ECD_03780 at 3992.990 kb on - strand, within ECD_03780 at 3992.990 kb on - strand, within ECD_03780 at 3993.063 kb on + strand, within ECD_03780 at 3993.064 kb on - strand, within ECD_03780 at 3993.064 kb on - strand, within ECD_03780 at 3993.109 kb on + strand, within ECD_03780 at 3993.109 kb on + strand, within ECD_03780 at 3993.109 kb on + strand, within ECD_03780 at 3993.109 kb on + strand, within ECD_03780 at 3993.199 kb on - strand, within ECD_03780 at 3993.266 kb on + strand, within ECD_03780 at 3993.267 kb on - strand, within ECD_03780 at 3993.362 kb on - strand at 3993.376 kb on - strand at 3993.376 kb on - strand at 3993.408 kb on - strand at 3993.408 kb on - strand at 3993.410 kb on - strand at 3993.732 kb on + strand, within ECD_03781 at 3993.763 kb on - strand, within ECD_03781 at 3993.829 kb on + strand, within ECD_03781 at 3993.829 kb on + strand, within ECD_03781 at 3993.830 kb on - strand, within ECD_03781 at 3993.830 kb on - strand, within ECD_03781 at 3993.851 kb on + strand, within ECD_03781 at 3993.851 kb on + strand, within ECD_03781 at 3993.852 kb on - strand, within ECD_03781 at 3993.941 kb on - strand, within ECD_03781 at 3993.949 kb on + strand, within ECD_03781 at 3994.051 kb on + strand, within ECD_03781 at 3994.051 kb on + strand, within ECD_03781 at 3994.052 kb on - strand, within ECD_03781 at 3994.207 kb on + strand, within ECD_03781 at 3994.607 kb on - strand at 3994.628 kb on - strand at 3994.630 kb on - strand at 3994.630 kb on - strand at 3994.630 kb on - strand at 3994.633 kb on - strand at 3994.658 kb on + strand at 3994.658 kb on + strand at 3994.717 kb on + strand at 3994.728 kb on + strand at 3994.728 kb on + strand at 3994.729 kb on - strand at 3994.772 kb on + strand at 3994.772 kb on + strand at 3994.772 kb on + strand at 3994.786 kb on - strand at 3994.886 kb on - strand, within ECD_03782 at 3995.008 kb on + strand, within ECD_03782 at 3995.011 kb on + strand, within ECD_03782 at 3995.012 kb on - strand, within ECD_03782 at 3995.012 kb on - strand, within ECD_03782 at 3995.012 kb on - strand, within ECD_03782 at 3995.053 kb on + strand, within ECD_03782 at 3995.053 kb on + strand, within ECD_03782 at 3995.053 kb on + strand, within ECD_03782 at 3995.054 kb on - strand, within ECD_03782 at 3995.232 kb on + strand, within ECD_03782 at 3995.294 kb on + strand, within ECD_03782 at 3995.294 kb on + strand, within ECD_03782 at 3995.299 kb on + strand, within ECD_03782 at 3995.300 kb on - strand, within ECD_03782 at 3995.308 kb on + strand, within ECD_03782 at 3995.324 kb on + strand, within ECD_03782 at 3995.436 kb on + strand, within ECD_03782 at 3995.489 kb on + strand, within ECD_03782 at 3995.494 kb on + strand, within ECD_03782 at 3995.498 kb on - strand, within ECD_03782 at 3995.513 kb on - strand, within ECD_03782 at 3995.601 kb on - strand, within ECD_03782 at 3995.603 kb on + strand, within ECD_03782 at 3995.641 kb on + strand, within ECD_03782 at 3995.641 kb on + strand, within ECD_03782 at 3995.641 kb on + strand, within ECD_03782 at 3995.642 kb on - strand, within ECD_03782 at 3995.644 kb on + strand, within ECD_03782
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnN remove 3,992,595 - -0.2 3,992,644 + +0.4 3,992,688 + ECD_03780 0.10 +0.9 3,992,688 + ECD_03780 0.10 +1.2 3,992,741 + ECD_03780 0.17 -0.6 3,992,742 - ECD_03780 0.17 +0.4 3,992,742 - ECD_03780 0.17 +0.9 3,992,792 + ECD_03780 0.23 -0.3 3,992,875 + ECD_03780 0.33 -0.6 3,992,956 + ECD_03780 0.42 +0.4 3,992,970 + ECD_03780 0.44 -1.3 3,992,989 + ECD_03780 0.46 +0.6 3,992,989 + ECD_03780 0.46 -0.8 3,992,990 - ECD_03780 0.46 +0.2 3,992,990 - ECD_03780 0.46 -0.0 3,992,990 - ECD_03780 0.46 +0.6 3,992,990 - ECD_03780 0.46 +0.6 3,992,990 - ECD_03780 0.46 +0.3 3,993,063 + ECD_03780 0.55 +0.4 3,993,064 - ECD_03780 0.55 +0.0 3,993,064 - ECD_03780 0.55 +0.7 3,993,109 + ECD_03780 0.61 -0.3 3,993,109 + ECD_03780 0.61 -2.0 3,993,109 + ECD_03780 0.61 +0.6 3,993,109 + ECD_03780 0.61 +0.4 3,993,199 - ECD_03780 0.71 +0.2 3,993,266 + ECD_03780 0.79 +0.6 3,993,267 - ECD_03780 0.80 -1.1 3,993,362 - +0.5 3,993,376 - +1.0 3,993,376 - +0.4 3,993,408 - +1.1 3,993,408 - +0.5 3,993,410 - +0.2 3,993,732 + ECD_03781 0.14 -0.8 3,993,763 - ECD_03781 0.16 +0.1 3,993,829 + ECD_03781 0.23 -0.3 3,993,829 + ECD_03781 0.23 -1.0 3,993,830 - ECD_03781 0.23 -0.2 3,993,830 - ECD_03781 0.23 +0.3 3,993,851 + ECD_03781 0.25 -1.9 3,993,851 + ECD_03781 0.25 +0.5 3,993,852 - ECD_03781 0.25 -0.5 3,993,941 - ECD_03781 0.33 -0.3 3,993,949 + ECD_03781 0.34 -0.8 3,994,051 + ECD_03781 0.44 +0.2 3,994,051 + ECD_03781 0.44 -1.1 3,994,052 - ECD_03781 0.44 -0.5 3,994,207 + ECD_03781 0.59 -0.5 3,994,607 - +0.7 3,994,628 - -0.5 3,994,630 - -0.1 3,994,630 - -0.1 3,994,630 - +0.6 3,994,633 - +0.5 3,994,658 + +0.3 3,994,658 + +0.3 3,994,717 + +0.3 3,994,728 + +0.4 3,994,728 + +0.2 3,994,729 - +0.4 3,994,772 + +0.5 3,994,772 + +0.6 3,994,772 + +1.1 3,994,786 - -0.6 3,994,886 - ECD_03782 0.11 -0.4 3,995,008 + ECD_03782 0.18 +0.9 3,995,011 + ECD_03782 0.18 -1.2 3,995,012 - ECD_03782 0.18 +0.1 3,995,012 - ECD_03782 0.18 -0.2 3,995,012 - ECD_03782 0.18 -0.3 3,995,053 + ECD_03782 0.21 +0.3 3,995,053 + ECD_03782 0.21 +0.5 3,995,053 + ECD_03782 0.21 +0.5 3,995,054 - ECD_03782 0.21 -0.4 3,995,232 + ECD_03782 0.31 +0.4 3,995,294 + ECD_03782 0.34 +0.3 3,995,294 + ECD_03782 0.34 +0.2 3,995,299 + ECD_03782 0.35 -0.0 3,995,300 - ECD_03782 0.35 -0.2 3,995,308 + ECD_03782 0.35 +0.7 3,995,324 + ECD_03782 0.36 -0.5 3,995,436 + ECD_03782 0.42 +0.8 3,995,489 + ECD_03782 0.45 +0.2 3,995,494 + ECD_03782 0.46 +0.3 3,995,498 - ECD_03782 0.46 +0.6 3,995,513 - ECD_03782 0.47 -0.6 3,995,601 - ECD_03782 0.52 +1.3 3,995,603 + ECD_03782 0.52 -0.5 3,995,641 + ECD_03782 0.54 -0.1 3,995,641 + ECD_03782 0.54 -0.2 3,995,641 + ECD_03782 0.54 -0.3 3,995,642 - ECD_03782 0.54 +0.0 3,995,644 + ECD_03782 0.54 -0.1
Or see this region's nucleotide sequence