Strain Fitness in Escherichia coli BL21 around ECD_03781

Experiment: Control_TnN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03780 and ECD_03781 are separated by 152 nucleotidesECD_03781 and ECD_03782 are separated by 49 nucleotides ECD_03780: ECD_03780 - formate dehydrogenase formation protein, at 3,992,603 to 3,993,436 _03780 ECD_03781: ECD_03781 - DUF3829 family lipoprotein, at 3,993,589 to 3,994,644 _03781 ECD_03782: ECD_03782 - putative frv operon regulator; contains a PTS EIIA domain, at 3,994,694 to 3,996,442 _03782 Position (kb) 3993 3994 3995Strain fitness (log2 ratio) -2 -1 0 1at 3992.595 kb on - strandat 3992.644 kb on + strandat 3992.688 kb on + strand, within ECD_03780at 3992.688 kb on + strand, within ECD_03780at 3992.741 kb on + strand, within ECD_03780at 3992.742 kb on - strand, within ECD_03780at 3992.742 kb on - strand, within ECD_03780at 3992.792 kb on + strand, within ECD_03780at 3992.875 kb on + strand, within ECD_03780at 3992.956 kb on + strand, within ECD_03780at 3992.970 kb on + strand, within ECD_03780at 3992.989 kb on + strand, within ECD_03780at 3992.989 kb on + strand, within ECD_03780at 3992.990 kb on - strand, within ECD_03780at 3992.990 kb on - strand, within ECD_03780at 3992.990 kb on - strand, within ECD_03780at 3992.990 kb on - strand, within ECD_03780at 3992.990 kb on - strand, within ECD_03780at 3993.063 kb on + strand, within ECD_03780at 3993.064 kb on - strand, within ECD_03780at 3993.064 kb on - strand, within ECD_03780at 3993.109 kb on + strand, within ECD_03780at 3993.109 kb on + strand, within ECD_03780at 3993.109 kb on + strand, within ECD_03780at 3993.109 kb on + strand, within ECD_03780at 3993.199 kb on - strand, within ECD_03780at 3993.266 kb on + strand, within ECD_03780at 3993.267 kb on - strand, within ECD_03780at 3993.362 kb on - strandat 3993.376 kb on - strandat 3993.376 kb on - strandat 3993.408 kb on - strandat 3993.408 kb on - strandat 3993.410 kb on - strandat 3993.732 kb on + strand, within ECD_03781at 3993.763 kb on - strand, within ECD_03781at 3993.829 kb on + strand, within ECD_03781at 3993.829 kb on + strand, within ECD_03781at 3993.830 kb on - strand, within ECD_03781at 3993.830 kb on - strand, within ECD_03781at 3993.851 kb on + strand, within ECD_03781at 3993.851 kb on + strand, within ECD_03781at 3993.852 kb on - strand, within ECD_03781at 3993.941 kb on - strand, within ECD_03781at 3993.949 kb on + strand, within ECD_03781at 3994.051 kb on + strand, within ECD_03781at 3994.051 kb on + strand, within ECD_03781at 3994.052 kb on - strand, within ECD_03781at 3994.207 kb on + strand, within ECD_03781at 3994.607 kb on - strandat 3994.628 kb on - strandat 3994.630 kb on - strandat 3994.630 kb on - strandat 3994.630 kb on - strandat 3994.633 kb on - strandat 3994.658 kb on + strandat 3994.658 kb on + strandat 3994.717 kb on + strandat 3994.728 kb on + strandat 3994.728 kb on + strandat 3994.729 kb on - strandat 3994.772 kb on + strandat 3994.772 kb on + strandat 3994.772 kb on + strandat 3994.786 kb on - strandat 3994.886 kb on - strand, within ECD_03782at 3995.008 kb on + strand, within ECD_03782at 3995.011 kb on + strand, within ECD_03782at 3995.012 kb on - strand, within ECD_03782at 3995.012 kb on - strand, within ECD_03782at 3995.012 kb on - strand, within ECD_03782at 3995.053 kb on + strand, within ECD_03782at 3995.053 kb on + strand, within ECD_03782at 3995.053 kb on + strand, within ECD_03782at 3995.054 kb on - strand, within ECD_03782at 3995.232 kb on + strand, within ECD_03782at 3995.294 kb on + strand, within ECD_03782at 3995.294 kb on + strand, within ECD_03782at 3995.299 kb on + strand, within ECD_03782at 3995.300 kb on - strand, within ECD_03782at 3995.308 kb on + strand, within ECD_03782at 3995.324 kb on + strand, within ECD_03782at 3995.436 kb on + strand, within ECD_03782at 3995.489 kb on + strand, within ECD_03782at 3995.494 kb on + strand, within ECD_03782at 3995.498 kb on - strand, within ECD_03782at 3995.513 kb on - strand, within ECD_03782at 3995.601 kb on - strand, within ECD_03782at 3995.603 kb on + strand, within ECD_03782at 3995.641 kb on + strand, within ECD_03782at 3995.641 kb on + strand, within ECD_03782at 3995.641 kb on + strand, within ECD_03782at 3995.642 kb on - strand, within ECD_03782at 3995.644 kb on + strand, within ECD_03782

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_TnN
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3,992,595 - -0.2
3,992,644 + +0.4
3,992,688 + ECD_03780 0.10 +0.9
3,992,688 + ECD_03780 0.10 +1.2
3,992,741 + ECD_03780 0.17 -0.6
3,992,742 - ECD_03780 0.17 +0.4
3,992,742 - ECD_03780 0.17 +0.9
3,992,792 + ECD_03780 0.23 -0.3
3,992,875 + ECD_03780 0.33 -0.6
3,992,956 + ECD_03780 0.42 +0.4
3,992,970 + ECD_03780 0.44 -1.3
3,992,989 + ECD_03780 0.46 +0.6
3,992,989 + ECD_03780 0.46 -0.8
3,992,990 - ECD_03780 0.46 +0.2
3,992,990 - ECD_03780 0.46 -0.0
3,992,990 - ECD_03780 0.46 +0.6
3,992,990 - ECD_03780 0.46 +0.6
3,992,990 - ECD_03780 0.46 +0.3
3,993,063 + ECD_03780 0.55 +0.4
3,993,064 - ECD_03780 0.55 +0.0
3,993,064 - ECD_03780 0.55 +0.7
3,993,109 + ECD_03780 0.61 -0.3
3,993,109 + ECD_03780 0.61 -2.0
3,993,109 + ECD_03780 0.61 +0.6
3,993,109 + ECD_03780 0.61 +0.4
3,993,199 - ECD_03780 0.71 +0.2
3,993,266 + ECD_03780 0.79 +0.6
3,993,267 - ECD_03780 0.80 -1.1
3,993,362 - +0.5
3,993,376 - +1.0
3,993,376 - +0.4
3,993,408 - +1.1
3,993,408 - +0.5
3,993,410 - +0.2
3,993,732 + ECD_03781 0.14 -0.8
3,993,763 - ECD_03781 0.16 +0.1
3,993,829 + ECD_03781 0.23 -0.3
3,993,829 + ECD_03781 0.23 -1.0
3,993,830 - ECD_03781 0.23 -0.2
3,993,830 - ECD_03781 0.23 +0.3
3,993,851 + ECD_03781 0.25 -1.9
3,993,851 + ECD_03781 0.25 +0.5
3,993,852 - ECD_03781 0.25 -0.5
3,993,941 - ECD_03781 0.33 -0.3
3,993,949 + ECD_03781 0.34 -0.8
3,994,051 + ECD_03781 0.44 +0.2
3,994,051 + ECD_03781 0.44 -1.1
3,994,052 - ECD_03781 0.44 -0.5
3,994,207 + ECD_03781 0.59 -0.5
3,994,607 - +0.7
3,994,628 - -0.5
3,994,630 - -0.1
3,994,630 - -0.1
3,994,630 - +0.6
3,994,633 - +0.5
3,994,658 + +0.3
3,994,658 + +0.3
3,994,717 + +0.3
3,994,728 + +0.4
3,994,728 + +0.2
3,994,729 - +0.4
3,994,772 + +0.5
3,994,772 + +0.6
3,994,772 + +1.1
3,994,786 - -0.6
3,994,886 - ECD_03782 0.11 -0.4
3,995,008 + ECD_03782 0.18 +0.9
3,995,011 + ECD_03782 0.18 -1.2
3,995,012 - ECD_03782 0.18 +0.1
3,995,012 - ECD_03782 0.18 -0.2
3,995,012 - ECD_03782 0.18 -0.3
3,995,053 + ECD_03782 0.21 +0.3
3,995,053 + ECD_03782 0.21 +0.5
3,995,053 + ECD_03782 0.21 +0.5
3,995,054 - ECD_03782 0.21 -0.4
3,995,232 + ECD_03782 0.31 +0.4
3,995,294 + ECD_03782 0.34 +0.3
3,995,294 + ECD_03782 0.34 +0.2
3,995,299 + ECD_03782 0.35 -0.0
3,995,300 - ECD_03782 0.35 -0.2
3,995,308 + ECD_03782 0.35 +0.7
3,995,324 + ECD_03782 0.36 -0.5
3,995,436 + ECD_03782 0.42 +0.8
3,995,489 + ECD_03782 0.45 +0.2
3,995,494 + ECD_03782 0.46 +0.3
3,995,498 - ECD_03782 0.46 +0.6
3,995,513 - ECD_03782 0.47 -0.6
3,995,601 - ECD_03782 0.52 +1.3
3,995,603 + ECD_03782 0.52 -0.5
3,995,641 + ECD_03782 0.54 -0.1
3,995,641 + ECD_03782 0.54 -0.2
3,995,641 + ECD_03782 0.54 -0.3
3,995,642 - ECD_03782 0.54 +0.0
3,995,644 + ECD_03782 0.54 -0.1

Or see this region's nucleotide sequence