Experiment: Control_TnN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03745 and ECD_03746 are separated by 16 nucleotides ECD_03746 and ECD_03747 are separated by 154 nucleotides
ECD_03745: ECD_03745 - Cpx stress response Thr/Ser protein kinase; MazF antagonist protein, at 3,949,152 to 3,950,138
_03745
ECD_03746: ECD_03746 - periplasmic protein disulfide isomerase I, at 3,950,155 to 3,950,781
_03746
ECD_03747: ECD_03747 - DUF945 family protein, at 3,950,936 to 3,952,366
_03747
Position (kb)
3950
3951 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3949.157 kb on + strand at 3949.157 kb on + strand at 3949.157 kb on + strand at 3949.183 kb on + strand at 3949.261 kb on - strand, within ECD_03745 at 3949.275 kb on + strand, within ECD_03745 at 3949.538 kb on - strand, within ECD_03745 at 3949.545 kb on - strand, within ECD_03745 at 3949.606 kb on - strand, within ECD_03745 at 3949.640 kb on + strand, within ECD_03745 at 3949.640 kb on + strand, within ECD_03745 at 3949.744 kb on + strand, within ECD_03745 at 3949.769 kb on + strand, within ECD_03745 at 3949.769 kb on + strand, within ECD_03745 at 3949.770 kb on - strand, within ECD_03745 at 3949.818 kb on - strand, within ECD_03745 at 3949.818 kb on - strand, within ECD_03745 at 3949.895 kb on + strand, within ECD_03745 at 3949.905 kb on + strand, within ECD_03745 at 3949.906 kb on - strand, within ECD_03745 at 3949.980 kb on + strand, within ECD_03745 at 3949.981 kb on - strand, within ECD_03745 at 3950.063 kb on - strand at 3950.083 kb on + strand at 3950.102 kb on - strand at 3950.122 kb on + strand at 3950.123 kb on - strand at 3950.129 kb on + strand at 3950.129 kb on + strand at 3950.129 kb on + strand at 3950.129 kb on + strand at 3950.129 kb on + strand at 3950.129 kb on + strand at 3950.129 kb on + strand at 3950.130 kb on - strand at 3950.130 kb on - strand at 3950.130 kb on - strand at 3950.130 kb on - strand at 3950.133 kb on + strand at 3950.133 kb on + strand at 3950.134 kb on - strand at 3950.149 kb on + strand at 3950.150 kb on - strand at 3950.150 kb on - strand at 3950.186 kb on + strand at 3950.219 kb on - strand, within ECD_03746 at 3950.229 kb on + strand, within ECD_03746 at 3950.230 kb on - strand, within ECD_03746 at 3950.237 kb on - strand, within ECD_03746 at 3950.241 kb on + strand, within ECD_03746 at 3950.334 kb on + strand, within ECD_03746 at 3950.387 kb on - strand, within ECD_03746 at 3950.498 kb on + strand, within ECD_03746 at 3950.498 kb on + strand, within ECD_03746 at 3950.543 kb on + strand, within ECD_03746 at 3950.543 kb on + strand, within ECD_03746 at 3950.547 kb on + strand, within ECD_03746 at 3950.559 kb on + strand, within ECD_03746 at 3950.560 kb on - strand, within ECD_03746 at 3950.560 kb on - strand, within ECD_03746 at 3950.562 kb on + strand, within ECD_03746 at 3950.575 kb on + strand, within ECD_03746 at 3950.706 kb on + strand, within ECD_03746 at 3950.744 kb on - strand at 3950.848 kb on + strand at 3950.944 kb on + strand at 3951.002 kb on + strand at 3951.044 kb on - strand at 3951.127 kb on + strand, within ECD_03747 at 3951.328 kb on + strand, within ECD_03747 at 3951.328 kb on + strand, within ECD_03747 at 3951.402 kb on + strand, within ECD_03747 at 3951.402 kb on + strand, within ECD_03747 at 3951.403 kb on - strand, within ECD_03747 at 3951.403 kb on - strand, within ECD_03747 at 3951.722 kb on + strand, within ECD_03747 at 3951.723 kb on - strand, within ECD_03747 at 3951.724 kb on + strand, within ECD_03747 at 3951.725 kb on - strand, within ECD_03747 at 3951.725 kb on - strand, within ECD_03747 at 3951.743 kb on + strand, within ECD_03747 at 3951.754 kb on + strand, within ECD_03747
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnN remove 3,949,157 + +0.4 3,949,157 + +0.5 3,949,157 + -1.1 3,949,183 + +0.0 3,949,261 - ECD_03745 0.11 +1.1 3,949,275 + ECD_03745 0.12 +0.6 3,949,538 - ECD_03745 0.39 +1.1 3,949,545 - ECD_03745 0.40 -0.1 3,949,606 - ECD_03745 0.46 +0.2 3,949,640 + ECD_03745 0.49 -0.2 3,949,640 + ECD_03745 0.49 +0.9 3,949,744 + ECD_03745 0.60 +0.8 3,949,769 + ECD_03745 0.63 -0.1 3,949,769 + ECD_03745 0.63 +0.3 3,949,770 - ECD_03745 0.63 -0.3 3,949,818 - ECD_03745 0.67 +0.9 3,949,818 - ECD_03745 0.67 +2.6 3,949,895 + ECD_03745 0.75 -0.6 3,949,905 + ECD_03745 0.76 +0.7 3,949,906 - ECD_03745 0.76 +2.3 3,949,980 + ECD_03745 0.84 -0.8 3,949,981 - ECD_03745 0.84 +1.5 3,950,063 - -2.0 3,950,083 + +1.0 3,950,102 - -0.6 3,950,122 + +0.0 3,950,123 - +0.3 3,950,129 + +0.4 3,950,129 + +0.3 3,950,129 + -0.2 3,950,129 + +0.1 3,950,129 + -0.3 3,950,129 + -0.7 3,950,129 + +0.7 3,950,130 - +0.4 3,950,130 - +0.6 3,950,130 - +0.3 3,950,130 - +1.5 3,950,133 + -0.3 3,950,133 + +0.2 3,950,134 - +0.5 3,950,149 + +0.1 3,950,150 - +0.4 3,950,150 - -0.3 3,950,186 + +1.3 3,950,219 - ECD_03746 0.10 -0.9 3,950,229 + ECD_03746 0.12 -0.7 3,950,230 - ECD_03746 0.12 +0.5 3,950,237 - ECD_03746 0.13 -0.3 3,950,241 + ECD_03746 0.14 -0.4 3,950,334 + ECD_03746 0.29 -0.0 3,950,387 - ECD_03746 0.37 -0.7 3,950,498 + ECD_03746 0.55 -1.2 3,950,498 + ECD_03746 0.55 -0.5 3,950,543 + ECD_03746 0.62 -1.1 3,950,543 + ECD_03746 0.62 +0.2 3,950,547 + ECD_03746 0.63 -2.3 3,950,559 + ECD_03746 0.64 -0.7 3,950,560 - ECD_03746 0.65 +0.0 3,950,560 - ECD_03746 0.65 -0.5 3,950,562 + ECD_03746 0.65 -0.9 3,950,575 + ECD_03746 0.67 +0.1 3,950,706 + ECD_03746 0.88 -0.6 3,950,744 - +0.4 3,950,848 + +0.3 3,950,944 + -0.9 3,951,002 + +0.4 3,951,044 - -0.0 3,951,127 + ECD_03747 0.13 -0.3 3,951,328 + ECD_03747 0.27 +0.9 3,951,328 + ECD_03747 0.27 -0.1 3,951,402 + ECD_03747 0.33 -0.5 3,951,402 + ECD_03747 0.33 -0.3 3,951,403 - ECD_03747 0.33 -0.4 3,951,403 - ECD_03747 0.33 +0.2 3,951,722 + ECD_03747 0.55 +0.2 3,951,723 - ECD_03747 0.55 +0.6 3,951,724 + ECD_03747 0.55 -1.4 3,951,725 - ECD_03747 0.55 +0.6 3,951,725 - ECD_03747 0.55 +0.3 3,951,743 + ECD_03747 0.56 +0.6 3,951,754 + ECD_03747 0.57 +0.2
Or see this region's nucleotide sequence