Strain Fitness in Escherichia coli BL21 around ECD_03513

Experiment: Control_TnN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03512 and ECD_03513 are separated by 120 nucleotidesECD_03513 and ECD_03514 are separated by 52 nucleotides ECD_03512: ECD_03512 - xanthine permease, at 3,696,422 to 3,697,813 _03512 ECD_03513: ECD_03513 - putative inner membrane-anchored periplasmic AsmA family protein, at 3,697,934 to 3,699,643 _03513 ECD_03514: ECD_03514 - putative alpha-glucosidase, at 3,699,696 to 3,702,014 _03514 Position (kb) 3697 3698 3699 3700Strain fitness (log2 ratio) -2 -1 0 1 2at 3697.038 kb on + strand, within ECD_03512at 3697.044 kb on + strand, within ECD_03512at 3697.044 kb on + strand, within ECD_03512at 3697.044 kb on + strand, within ECD_03512at 3697.044 kb on + strand, within ECD_03512at 3697.044 kb on + strand, within ECD_03512at 3697.044 kb on + strand, within ECD_03512at 3697.044 kb on + strand, within ECD_03512at 3697.045 kb on - strand, within ECD_03512at 3697.069 kb on + strand, within ECD_03512at 3697.070 kb on - strand, within ECD_03512at 3697.077 kb on - strand, within ECD_03512at 3697.081 kb on - strand, within ECD_03512at 3697.136 kb on - strand, within ECD_03512at 3697.184 kb on - strand, within ECD_03512at 3697.184 kb on - strand, within ECD_03512at 3697.184 kb on - strand, within ECD_03512at 3697.202 kb on + strand, within ECD_03512at 3697.203 kb on - strand, within ECD_03512at 3697.203 kb on - strand, within ECD_03512at 3697.334 kb on + strand, within ECD_03512at 3697.335 kb on - strand, within ECD_03512at 3697.578 kb on + strand, within ECD_03512at 3697.578 kb on + strand, within ECD_03512at 3697.578 kb on + strand, within ECD_03512at 3697.578 kb on + strand, within ECD_03512at 3697.578 kb on + strand, within ECD_03512at 3697.579 kb on - strand, within ECD_03512at 3697.579 kb on - strand, within ECD_03512at 3697.765 kb on + strandat 3697.768 kb on + strandat 3697.769 kb on - strandat 3697.812 kb on - strandat 3697.833 kb on + strandat 3697.833 kb on + strandat 3697.834 kb on - strandat 3697.898 kb on + strandat 3697.898 kb on + strandat 3697.898 kb on + strandat 3697.899 kb on - strandat 3697.899 kb on - strandat 3697.907 kb on + strandat 3697.908 kb on - strandat 3697.961 kb on + strandat 3697.961 kb on + strandat 3697.962 kb on - strandat 3697.980 kb on + strandat 3698.000 kb on + strandat 3698.001 kb on - strandat 3698.001 kb on - strandat 3698.001 kb on - strandat 3698.035 kb on + strandat 3698.036 kb on - strandat 3698.036 kb on - strandat 3698.059 kb on + strandat 3698.116 kb on + strand, within ECD_03513at 3698.116 kb on + strand, within ECD_03513at 3698.117 kb on - strand, within ECD_03513at 3698.318 kb on - strand, within ECD_03513at 3698.326 kb on + strand, within ECD_03513at 3698.330 kb on - strand, within ECD_03513at 3698.338 kb on + strand, within ECD_03513at 3698.380 kb on - strand, within ECD_03513at 3698.405 kb on - strand, within ECD_03513at 3698.437 kb on + strand, within ECD_03513at 3698.481 kb on + strand, within ECD_03513at 3698.481 kb on + strand, within ECD_03513at 3698.481 kb on + strand, within ECD_03513at 3698.481 kb on + strand, within ECD_03513at 3698.482 kb on - strand, within ECD_03513at 3698.497 kb on + strand, within ECD_03513at 3698.497 kb on + strand, within ECD_03513at 3698.620 kb on + strand, within ECD_03513at 3698.622 kb on + strand, within ECD_03513at 3698.622 kb on + strand, within ECD_03513at 3698.622 kb on + strand, within ECD_03513at 3698.622 kb on + strand, within ECD_03513at 3698.622 kb on + strand, within ECD_03513at 3698.622 kb on + strand, within ECD_03513at 3698.622 kb on + strand, within ECD_03513at 3698.622 kb on + strand, within ECD_03513at 3698.622 kb on + strand, within ECD_03513at 3698.623 kb on - strand, within ECD_03513at 3698.623 kb on - strand, within ECD_03513at 3698.623 kb on - strand, within ECD_03513at 3698.623 kb on - strand, within ECD_03513at 3698.623 kb on - strand, within ECD_03513at 3698.623 kb on - strand, within ECD_03513at 3698.623 kb on - strand, within ECD_03513at 3698.628 kb on + strand, within ECD_03513at 3698.629 kb on - strand, within ECD_03513at 3698.629 kb on - strand, within ECD_03513at 3698.667 kb on + strand, within ECD_03513at 3698.667 kb on + strand, within ECD_03513at 3698.667 kb on + strand, within ECD_03513at 3698.668 kb on - strand, within ECD_03513at 3698.841 kb on - strand, within ECD_03513at 3698.870 kb on - strand, within ECD_03513at 3699.014 kb on + strand, within ECD_03513at 3699.015 kb on - strand, within ECD_03513at 3699.016 kb on + strand, within ECD_03513at 3699.016 kb on + strand, within ECD_03513at 3699.016 kb on + strand, within ECD_03513at 3699.016 kb on + strand, within ECD_03513at 3699.016 kb on + strand, within ECD_03513at 3699.016 kb on + strand, within ECD_03513at 3699.016 kb on + strand, within ECD_03513at 3699.017 kb on - strand, within ECD_03513at 3699.017 kb on - strand, within ECD_03513at 3699.017 kb on - strand, within ECD_03513at 3699.017 kb on - strand, within ECD_03513at 3699.196 kb on + strand, within ECD_03513at 3699.196 kb on + strand, within ECD_03513at 3699.196 kb on + strand, within ECD_03513at 3699.196 kb on + strand, within ECD_03513at 3699.197 kb on - strand, within ECD_03513at 3699.310 kb on + strand, within ECD_03513at 3699.311 kb on - strand, within ECD_03513at 3699.331 kb on + strand, within ECD_03513at 3699.332 kb on - strand, within ECD_03513at 3699.332 kb on - strand, within ECD_03513at 3699.394 kb on + strand, within ECD_03513at 3699.394 kb on + strand, within ECD_03513at 3699.394 kb on + strand, within ECD_03513at 3699.394 kb on + strand, within ECD_03513at 3699.395 kb on - strand, within ECD_03513at 3699.395 kb on - strand, within ECD_03513at 3699.395 kb on - strand, within ECD_03513at 3699.457 kb on - strand, within ECD_03513at 3699.479 kb on - strandat 3699.529 kb on + strandat 3699.619 kb on + strandat 3699.619 kb on + strandat 3699.692 kb on + strandat 3699.692 kb on + strandat 3699.692 kb on + strandat 3699.697 kb on + strandat 3699.697 kb on + strandat 3699.697 kb on + strandat 3699.698 kb on - strandat 3699.698 kb on - strandat 3699.698 kb on - strandat 3699.698 kb on - strandat 3699.704 kb on + strandat 3699.704 kb on + strandat 3699.705 kb on - strandat 3699.705 kb on - strandat 3699.784 kb on - strandat 3699.860 kb on + strandat 3699.860 kb on + strandat 3699.861 kb on - strandat 3699.878 kb on + strandat 3699.878 kb on + strandat 3699.878 kb on + strandat 3699.878 kb on + strandat 3699.942 kb on - strand, within ECD_03514at 3699.976 kb on + strand, within ECD_03514at 3699.977 kb on - strand, within ECD_03514at 3699.977 kb on - strand, within ECD_03514at 3700.012 kb on - strand, within ECD_03514at 3700.030 kb on + strand, within ECD_03514at 3700.031 kb on - strand, within ECD_03514at 3700.129 kb on + strand, within ECD_03514at 3700.130 kb on - strand, within ECD_03514at 3700.130 kb on - strand, within ECD_03514at 3700.130 kb on - strand, within ECD_03514at 3700.130 kb on - strand, within ECD_03514at 3700.185 kb on + strand, within ECD_03514at 3700.186 kb on - strand, within ECD_03514at 3700.192 kb on + strand, within ECD_03514at 3700.192 kb on + strand, within ECD_03514at 3700.192 kb on + strand, within ECD_03514at 3700.192 kb on + strand, within ECD_03514at 3700.192 kb on + strand, within ECD_03514at 3700.192 kb on + strand, within ECD_03514at 3700.192 kb on + strand, within ECD_03514at 3700.192 kb on + strand, within ECD_03514at 3700.193 kb on - strand, within ECD_03514at 3700.193 kb on - strand, within ECD_03514at 3700.193 kb on - strand, within ECD_03514at 3700.193 kb on - strand, within ECD_03514at 3700.364 kb on - strand, within ECD_03514at 3700.391 kb on + strand, within ECD_03514at 3700.463 kb on + strand, within ECD_03514at 3700.464 kb on - strand, within ECD_03514at 3700.555 kb on + strand, within ECD_03514at 3700.555 kb on + strand, within ECD_03514at 3700.560 kb on - strand, within ECD_03514at 3700.565 kb on - strand, within ECD_03514

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_TnN
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3,697,038 + ECD_03512 0.44 +0.5
3,697,044 + ECD_03512 0.45 -1.6
3,697,044 + ECD_03512 0.45 +0.0
3,697,044 + ECD_03512 0.45 +0.1
3,697,044 + ECD_03512 0.45 +1.2
3,697,044 + ECD_03512 0.45 -0.3
3,697,044 + ECD_03512 0.45 -0.7
3,697,044 + ECD_03512 0.45 +2.0
3,697,045 - ECD_03512 0.45 +2.4
3,697,069 + ECD_03512 0.46 +1.0
3,697,070 - ECD_03512 0.47 -0.1
3,697,077 - ECD_03512 0.47 +0.0
3,697,081 - ECD_03512 0.47 -0.8
3,697,136 - ECD_03512 0.51 +0.6
3,697,184 - ECD_03512 0.55 +1.2
3,697,184 - ECD_03512 0.55 +0.7
3,697,184 - ECD_03512 0.55 +0.3
3,697,202 + ECD_03512 0.56 +0.2
3,697,203 - ECD_03512 0.56 -0.6
3,697,203 - ECD_03512 0.56 -0.3
3,697,334 + ECD_03512 0.66 -0.5
3,697,335 - ECD_03512 0.66 +0.1
3,697,578 + ECD_03512 0.83 -0.1
3,697,578 + ECD_03512 0.83 +0.0
3,697,578 + ECD_03512 0.83 -0.2
3,697,578 + ECD_03512 0.83 +1.0
3,697,578 + ECD_03512 0.83 -0.5
3,697,579 - ECD_03512 0.83 +0.6
3,697,579 - ECD_03512 0.83 -0.3
3,697,765 + -0.2
3,697,768 + +0.4
3,697,769 - -0.3
3,697,812 - +0.1
3,697,833 + -0.3
3,697,833 + -0.4
3,697,834 - -0.0
3,697,898 + -0.3
3,697,898 + -0.1
3,697,898 + +1.3
3,697,899 - -0.2
3,697,899 - -0.2
3,697,907 + +0.7
3,697,908 - +0.2
3,697,961 + +0.3
3,697,961 + -0.3
3,697,962 - +1.1
3,697,980 + -0.2
3,698,000 + +1.1
3,698,001 - -0.5
3,698,001 - +0.1
3,698,001 - -0.7
3,698,035 + -0.3
3,698,036 - -0.3
3,698,036 - +0.1
3,698,059 + -0.0
3,698,116 + ECD_03513 0.11 -0.7
3,698,116 + ECD_03513 0.11 -1.1
3,698,117 - ECD_03513 0.11 -2.1
3,698,318 - ECD_03513 0.22 -0.5
3,698,326 + ECD_03513 0.23 -0.0
3,698,330 - ECD_03513 0.23 -0.3
3,698,338 + ECD_03513 0.24 +0.1
3,698,380 - ECD_03513 0.26 -0.3
3,698,405 - ECD_03513 0.28 +0.8
3,698,437 + ECD_03513 0.29 -0.5
3,698,481 + ECD_03513 0.32 +0.7
3,698,481 + ECD_03513 0.32 -0.1
3,698,481 + ECD_03513 0.32 -0.3
3,698,481 + ECD_03513 0.32 -0.5
3,698,482 - ECD_03513 0.32 +0.7
3,698,497 + ECD_03513 0.33 -0.2
3,698,497 + ECD_03513 0.33 -0.1
3,698,620 + ECD_03513 0.40 +1.8
3,698,622 + ECD_03513 0.40 -0.7
3,698,622 + ECD_03513 0.40 +0.4
3,698,622 + ECD_03513 0.40 +1.2
3,698,622 + ECD_03513 0.40 -0.2
3,698,622 + ECD_03513 0.40 -0.9
3,698,622 + ECD_03513 0.40 +0.1
3,698,622 + ECD_03513 0.40 -0.1
3,698,622 + ECD_03513 0.40 -0.8
3,698,622 + ECD_03513 0.40 +0.3
3,698,623 - ECD_03513 0.40 +0.9
3,698,623 - ECD_03513 0.40 +0.5
3,698,623 - ECD_03513 0.40 -0.2
3,698,623 - ECD_03513 0.40 +0.1
3,698,623 - ECD_03513 0.40 -0.9
3,698,623 - ECD_03513 0.40 +0.4
3,698,623 - ECD_03513 0.40 -0.7
3,698,628 + ECD_03513 0.41 -0.1
3,698,629 - ECD_03513 0.41 +0.5
3,698,629 - ECD_03513 0.41 +0.1
3,698,667 + ECD_03513 0.43 -0.2
3,698,667 + ECD_03513 0.43 +0.2
3,698,667 + ECD_03513 0.43 -0.0
3,698,668 - ECD_03513 0.43 -1.2
3,698,841 - ECD_03513 0.53 +0.0
3,698,870 - ECD_03513 0.55 +0.6
3,699,014 + ECD_03513 0.63 +0.1
3,699,015 - ECD_03513 0.63 -0.5
3,699,016 + ECD_03513 0.63 -0.8
3,699,016 + ECD_03513 0.63 +0.4
3,699,016 + ECD_03513 0.63 -1.5
3,699,016 + ECD_03513 0.63 +0.7
3,699,016 + ECD_03513 0.63 -0.6
3,699,016 + ECD_03513 0.63 -0.8
3,699,016 + ECD_03513 0.63 -0.7
3,699,017 - ECD_03513 0.63 +0.2
3,699,017 - ECD_03513 0.63 +0.1
3,699,017 - ECD_03513 0.63 +0.0
3,699,017 - ECD_03513 0.63 +0.2
3,699,196 + ECD_03513 0.74 -0.5
3,699,196 + ECD_03513 0.74 -0.5
3,699,196 + ECD_03513 0.74 +0.5
3,699,196 + ECD_03513 0.74 -0.1
3,699,197 - ECD_03513 0.74 -0.6
3,699,310 + ECD_03513 0.80 -0.9
3,699,311 - ECD_03513 0.81 -1.6
3,699,331 + ECD_03513 0.82 +0.1
3,699,332 - ECD_03513 0.82 -0.1
3,699,332 - ECD_03513 0.82 +1.1
3,699,394 + ECD_03513 0.85 +0.1
3,699,394 + ECD_03513 0.85 -0.5
3,699,394 + ECD_03513 0.85 -1.1
3,699,394 + ECD_03513 0.85 +1.6
3,699,395 - ECD_03513 0.85 +0.4
3,699,395 - ECD_03513 0.85 +0.8
3,699,395 - ECD_03513 0.85 -0.1
3,699,457 - ECD_03513 0.89 -0.2
3,699,479 - +0.3
3,699,529 + +0.5
3,699,619 + -1.7
3,699,619 + +1.5
3,699,692 + -0.2
3,699,692 + -0.4
3,699,692 + -0.1
3,699,697 + -1.3
3,699,697 + -0.1
3,699,697 + +0.4
3,699,698 - -0.4
3,699,698 - +0.5
3,699,698 - -0.1
3,699,698 - +0.1
3,699,704 + -0.2
3,699,704 + +0.5
3,699,705 - +1.6
3,699,705 - +0.4
3,699,784 - +0.2
3,699,860 + +0.4
3,699,860 + +0.6
3,699,861 - +1.1
3,699,878 + +0.1
3,699,878 + -0.7
3,699,878 + -0.2
3,699,878 + +0.7
3,699,942 - ECD_03514 0.11 -0.0
3,699,976 + ECD_03514 0.12 +0.0
3,699,977 - ECD_03514 0.12 -0.3
3,699,977 - ECD_03514 0.12 -0.4
3,700,012 - ECD_03514 0.14 -0.3
3,700,030 + ECD_03514 0.14 -0.0
3,700,031 - ECD_03514 0.14 -0.5
3,700,129 + ECD_03514 0.19 -0.1
3,700,130 - ECD_03514 0.19 +0.7
3,700,130 - ECD_03514 0.19 +0.2
3,700,130 - ECD_03514 0.19 +1.0
3,700,130 - ECD_03514 0.19 -0.0
3,700,185 + ECD_03514 0.21 -1.2
3,700,186 - ECD_03514 0.21 -1.2
3,700,192 + ECD_03514 0.21 -0.7
3,700,192 + ECD_03514 0.21 +0.3
3,700,192 + ECD_03514 0.21 -0.0
3,700,192 + ECD_03514 0.21 +0.8
3,700,192 + ECD_03514 0.21 +0.7
3,700,192 + ECD_03514 0.21 +0.7
3,700,192 + ECD_03514 0.21 -0.8
3,700,192 + ECD_03514 0.21 -0.9
3,700,193 - ECD_03514 0.21 +2.2
3,700,193 - ECD_03514 0.21 +0.2
3,700,193 - ECD_03514 0.21 +0.7
3,700,193 - ECD_03514 0.21 +0.9
3,700,364 - ECD_03514 0.29 -0.7
3,700,391 + ECD_03514 0.30 +0.6
3,700,463 + ECD_03514 0.33 -0.2
3,700,464 - ECD_03514 0.33 -1.2
3,700,555 + ECD_03514 0.37 -0.4
3,700,555 + ECD_03514 0.37 -0.8
3,700,560 - ECD_03514 0.37 +0.3
3,700,565 - ECD_03514 0.37 -0.2

Or see this region's nucleotide sequence