Experiment: Control_TnN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03504 and ECD_03505 are separated by 257 nucleotides ECD_03505 and ECD_03506 are separated by 54 nucleotides ECD_03506 and ECD_03507 are separated by 18 nucleotides
ECD_03504: ECD_03504 - DNA ligase, NAD(+)-dependent, at 3,686,280 to 3,687,962
_03504
ECD_03505: ECD_03505 - guanylate kinase, at 3,688,220 to 3,688,843
_03505
ECD_03506: ECD_03506 - RNA polymerase, omega subunit, at 3,688,898 to 3,689,173
_03506
ECD_03507: ECD_03507 - bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase, at 3,689,192 to 3,691,300
_03507
Position (kb)
3688
3689
3690 Strain fitness (log2 ratio)
-1
0
1 at 3687.932 kb on + strand at 3687.932 kb on + strand at 3687.932 kb on + strand at 3687.932 kb on + strand at 3687.933 kb on - strand at 3687.933 kb on - strand at 3687.933 kb on - strand at 3687.936 kb on + strand at 3687.936 kb on + strand at 3687.936 kb on + strand at 3687.937 kb on - strand at 3687.937 kb on - strand at 3687.939 kb on + strand at 3687.939 kb on + strand at 3687.939 kb on + strand at 3687.939 kb on + strand at 3687.940 kb on - strand at 3687.940 kb on - strand at 3687.954 kb on + strand at 3687.954 kb on + strand at 3687.955 kb on - strand at 3687.955 kb on - strand at 3687.955 kb on - strand at 3687.977 kb on + strand at 3687.977 kb on + strand at 3687.977 kb on + strand at 3687.993 kb on + strand at 3687.994 kb on - strand at 3687.995 kb on + strand at 3687.995 kb on + strand at 3687.995 kb on + strand at 3687.995 kb on + strand at 3687.995 kb on + strand at 3687.995 kb on + strand at 3687.996 kb on - strand at 3687.996 kb on - strand at 3687.996 kb on - strand at 3687.996 kb on - strand at 3687.996 kb on - strand at 3687.996 kb on - strand at 3687.996 kb on - strand at 3688.065 kb on + strand at 3688.145 kb on - strand at 3688.145 kb on - strand at 3688.179 kb on + strand at 3688.179 kb on + strand at 3688.179 kb on + strand at 3688.179 kb on + strand at 3688.179 kb on + strand at 3688.179 kb on + strand at 3688.179 kb on + strand at 3688.179 kb on + strand at 3688.183 kb on + strand at 3688.183 kb on + strand at 3688.206 kb on + strand at 3688.893 kb on + strand at 3688.893 kb on + strand at 3688.897 kb on + strand at 3688.908 kb on + strand at 3689.040 kb on + strand, within ECD_03506 at 3689.040 kb on + strand, within ECD_03506 at 3689.152 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnN remove 3,687,932 + -1.0 3,687,932 + +0.3 3,687,932 + -0.2 3,687,932 + -0.2 3,687,933 - -0.2 3,687,933 - +0.4 3,687,933 - +0.3 3,687,936 + -0.0 3,687,936 + +0.6 3,687,936 + +0.6 3,687,937 - +0.1 3,687,937 - -0.2 3,687,939 + -0.0 3,687,939 + -0.4 3,687,939 + -0.1 3,687,939 + -0.6 3,687,940 - +0.4 3,687,940 - -0.1 3,687,954 + -0.2 3,687,954 + +1.2 3,687,955 - -0.1 3,687,955 - +1.2 3,687,955 - +0.8 3,687,977 + +0.1 3,687,977 + +0.2 3,687,977 + +0.3 3,687,993 + +0.1 3,687,994 - -0.6 3,687,995 + +0.4 3,687,995 + +0.1 3,687,995 + +0.4 3,687,995 + +0.0 3,687,995 + +0.4 3,687,995 + -0.1 3,687,996 - +0.0 3,687,996 - +0.2 3,687,996 - +0.3 3,687,996 - +0.3 3,687,996 - -0.5 3,687,996 - -0.4 3,687,996 - +0.7 3,688,065 + -0.1 3,688,145 - +0.1 3,688,145 - -0.7 3,688,179 + -0.7 3,688,179 + -0.4 3,688,179 + +0.1 3,688,179 + -0.6 3,688,179 + -0.0 3,688,179 + +0.6 3,688,179 + -0.1 3,688,179 + -0.3 3,688,183 + -0.4 3,688,183 + -0.3 3,688,206 + +0.4 3,688,893 + -1.1 3,688,893 + +0.3 3,688,897 + -0.6 3,688,908 + +0.2 3,689,040 + ECD_03506 0.51 -0.6 3,689,040 + ECD_03506 0.51 +0.2 3,689,152 + +0.7
Or see this region's nucleotide sequence