Experiment: Control_TnN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02866 and ECD_02867 are separated by 12 nucleotides ECD_02867 and ECD_02868 overlap by 8 nucleotides ECD_02868 and ECD_02869 overlap by 8 nucleotides ECD_02869 and ECD_02870 overlap by 1 nucleotides
ECD_02866: ECD_02866 - hydrogenase 2 accessory protein, at 3,007,150 to 3,007,398
_02866
ECD_02867: ECD_02867 - protein involved with the maturation of hydrogenases 1 and 2, at 3,007,411 to 3,007,752
_02867
ECD_02868: ECD_02868 - hydrogenase 2-specific chaperone, at 3,007,745 to 3,008,233
_02868
ECD_02869: ECD_02869 - maturation protease for hydrogenase 2, at 3,008,226 to 3,008,720
_02869
ECD_02870: ECD_02870 - hydrogenase 2, large subunit, at 3,008,720 to 3,010,423
_02870
Position (kb)
3008
3009 Strain fitness (log2 ratio)
-1
0
1
2 at 3007.327 kb on + strand, within ECD_02866 at 3007.327 kb on + strand, within ECD_02866 at 3007.327 kb on + strand, within ECD_02866 at 3007.328 kb on - strand, within ECD_02866 at 3007.328 kb on - strand, within ECD_02866 at 3007.328 kb on - strand, within ECD_02866 at 3007.328 kb on - strand, within ECD_02866 at 3007.328 kb on - strand, within ECD_02866 at 3007.353 kb on + strand, within ECD_02866 at 3007.353 kb on + strand, within ECD_02866 at 3007.354 kb on - strand, within ECD_02866 at 3007.393 kb on - strand at 3007.393 kb on - strand at 3007.556 kb on + strand, within ECD_02867 at 3007.557 kb on - strand, within ECD_02867 at 3007.567 kb on + strand, within ECD_02867 at 3007.567 kb on + strand, within ECD_02867 at 3007.568 kb on - strand, within ECD_02867 at 3007.568 kb on - strand, within ECD_02867 at 3007.568 kb on - strand, within ECD_02867 at 3007.802 kb on + strand, within ECD_02868 at 3007.802 kb on + strand, within ECD_02868 at 3007.803 kb on - strand, within ECD_02868 at 3007.803 kb on - strand, within ECD_02868 at 3007.921 kb on - strand, within ECD_02868 at 3007.960 kb on + strand, within ECD_02868 at 3007.969 kb on - strand, within ECD_02868 at 3007.969 kb on - strand, within ECD_02868 at 3008.112 kb on + strand, within ECD_02868 at 3008.112 kb on + strand, within ECD_02868 at 3008.113 kb on - strand, within ECD_02868 at 3008.113 kb on - strand, within ECD_02868 at 3008.187 kb on - strand at 3008.220 kb on - strand at 3008.543 kb on + strand, within ECD_02869 at 3008.632 kb on + strand, within ECD_02869 at 3008.633 kb on - strand, within ECD_02869 at 3008.633 kb on - strand, within ECD_02869 at 3008.714 kb on + strand at 3008.715 kb on - strand at 3008.721 kb on + strand at 3008.765 kb on + strand at 3008.766 kb on - strand at 3008.766 kb on - strand at 3008.766 kb on - strand at 3008.810 kb on - strand at 3008.872 kb on - strand at 3008.938 kb on - strand, within ECD_02870 at 3009.149 kb on - strand, within ECD_02870 at 3009.149 kb on - strand, within ECD_02870 at 3009.164 kb on - strand, within ECD_02870 at 3009.194 kb on - strand, within ECD_02870 at 3009.278 kb on - strand, within ECD_02870 at 3009.278 kb on - strand, within ECD_02870 at 3009.278 kb on - strand, within ECD_02870 at 3009.278 kb on - strand, within ECD_02870 at 3009.281 kb on - strand, within ECD_02870 at 3009.339 kb on + strand, within ECD_02870 at 3009.340 kb on - strand, within ECD_02870 at 3009.366 kb on + strand, within ECD_02870 at 3009.367 kb on - strand, within ECD_02870 at 3009.417 kb on + strand, within ECD_02870 at 3009.417 kb on + strand, within ECD_02870 at 3009.418 kb on - strand, within ECD_02870 at 3009.460 kb on - strand, within ECD_02870 at 3009.490 kb on - strand, within ECD_02870 at 3009.580 kb on - strand, within ECD_02870 at 3009.580 kb on - strand, within ECD_02870 at 3009.632 kb on - strand, within ECD_02870 at 3009.632 kb on - strand, within ECD_02870 at 3009.650 kb on - strand, within ECD_02870 at 3009.650 kb on - strand, within ECD_02870 at 3009.650 kb on - strand, within ECD_02870 at 3009.650 kb on - strand, within ECD_02870 at 3009.650 kb on - strand, within ECD_02870 at 3009.651 kb on + strand, within ECD_02870 at 3009.651 kb on + strand, within ECD_02870 at 3009.651 kb on + strand, within ECD_02870 at 3009.652 kb on - strand, within ECD_02870 at 3009.699 kb on + strand, within ECD_02870 at 3009.699 kb on + strand, within ECD_02870 at 3009.699 kb on + strand, within ECD_02870 at 3009.699 kb on + strand, within ECD_02870 at 3009.699 kb on + strand, within ECD_02870 at 3009.699 kb on + strand, within ECD_02870 at 3009.699 kb on + strand, within ECD_02870 at 3009.700 kb on - strand, within ECD_02870 at 3009.700 kb on - strand, within ECD_02870
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnN remove 3,007,327 + ECD_02866 0.71 +2.0 3,007,327 + ECD_02866 0.71 +0.3 3,007,327 + ECD_02866 0.71 +0.3 3,007,328 - ECD_02866 0.71 +1.9 3,007,328 - ECD_02866 0.71 -0.7 3,007,328 - ECD_02866 0.71 +0.0 3,007,328 - ECD_02866 0.71 -0.7 3,007,328 - ECD_02866 0.71 +0.2 3,007,353 + ECD_02866 0.82 +0.1 3,007,353 + ECD_02866 0.82 +0.9 3,007,354 - ECD_02866 0.82 -0.8 3,007,393 - -0.0 3,007,393 - +1.4 3,007,556 + ECD_02867 0.42 +0.5 3,007,557 - ECD_02867 0.43 -1.5 3,007,567 + ECD_02867 0.46 +0.1 3,007,567 + ECD_02867 0.46 -0.2 3,007,568 - ECD_02867 0.46 -0.7 3,007,568 - ECD_02867 0.46 +0.1 3,007,568 - ECD_02867 0.46 +0.3 3,007,802 + ECD_02868 0.12 +0.9 3,007,802 + ECD_02868 0.12 +0.1 3,007,803 - ECD_02868 0.12 -0.4 3,007,803 - ECD_02868 0.12 +0.2 3,007,921 - ECD_02868 0.36 +0.9 3,007,960 + ECD_02868 0.44 -0.0 3,007,969 - ECD_02868 0.46 -0.7 3,007,969 - ECD_02868 0.46 +0.4 3,008,112 + ECD_02868 0.75 +0.4 3,008,112 + ECD_02868 0.75 +0.2 3,008,113 - ECD_02868 0.75 +0.1 3,008,113 - ECD_02868 0.75 -0.3 3,008,187 - -0.7 3,008,220 - -0.1 3,008,543 + ECD_02869 0.64 -0.5 3,008,632 + ECD_02869 0.82 +0.1 3,008,633 - ECD_02869 0.82 -0.8 3,008,633 - ECD_02869 0.82 -0.5 3,008,714 + +0.9 3,008,715 - -1.7 3,008,721 + -0.2 3,008,765 + +0.3 3,008,766 - -0.1 3,008,766 - +1.7 3,008,766 - -1.0 3,008,810 - +0.1 3,008,872 - -0.1 3,008,938 - ECD_02870 0.13 +0.9 3,009,149 - ECD_02870 0.25 -0.0 3,009,149 - ECD_02870 0.25 -1.0 3,009,164 - ECD_02870 0.26 -0.5 3,009,194 - ECD_02870 0.28 +0.6 3,009,278 - ECD_02870 0.33 -0.5 3,009,278 - ECD_02870 0.33 +0.0 3,009,278 - ECD_02870 0.33 +1.0 3,009,278 - ECD_02870 0.33 +0.1 3,009,281 - ECD_02870 0.33 +0.7 3,009,339 + ECD_02870 0.36 -0.9 3,009,340 - ECD_02870 0.36 -0.3 3,009,366 + ECD_02870 0.38 +0.4 3,009,367 - ECD_02870 0.38 +0.2 3,009,417 + ECD_02870 0.41 -1.7 3,009,417 + ECD_02870 0.41 -0.2 3,009,418 - ECD_02870 0.41 +0.4 3,009,460 - ECD_02870 0.43 -0.4 3,009,490 - ECD_02870 0.45 -0.7 3,009,580 - ECD_02870 0.50 +0.1 3,009,580 - ECD_02870 0.50 +0.2 3,009,632 - ECD_02870 0.54 +0.8 3,009,632 - ECD_02870 0.54 +0.7 3,009,650 - ECD_02870 0.55 -0.2 3,009,650 - ECD_02870 0.55 +0.9 3,009,650 - ECD_02870 0.55 +0.6 3,009,650 - ECD_02870 0.55 +0.9 3,009,650 - ECD_02870 0.55 +0.6 3,009,651 + ECD_02870 0.55 -1.1 3,009,651 + ECD_02870 0.55 +0.1 3,009,651 + ECD_02870 0.55 -0.5 3,009,652 - ECD_02870 0.55 -0.3 3,009,699 + ECD_02870 0.57 +0.4 3,009,699 + ECD_02870 0.57 +0.6 3,009,699 + ECD_02870 0.57 +1.1 3,009,699 + ECD_02870 0.57 +1.1 3,009,699 + ECD_02870 0.57 -0.3 3,009,699 + ECD_02870 0.57 -0.6 3,009,699 + ECD_02870 0.57 +0.0 3,009,700 - ECD_02870 0.58 -0.1 3,009,700 - ECD_02870 0.58 -0.1
Or see this region's nucleotide sequence