Strain Fitness in Escherichia coli BL21 around ECD_02869

Experiment: Control_TnN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02866 and ECD_02867 are separated by 12 nucleotidesECD_02867 and ECD_02868 overlap by 8 nucleotidesECD_02868 and ECD_02869 overlap by 8 nucleotidesECD_02869 and ECD_02870 overlap by 1 nucleotides ECD_02866: ECD_02866 - hydrogenase 2 accessory protein, at 3,007,150 to 3,007,398 _02866 ECD_02867: ECD_02867 - protein involved with the maturation of hydrogenases 1 and 2, at 3,007,411 to 3,007,752 _02867 ECD_02868: ECD_02868 - hydrogenase 2-specific chaperone, at 3,007,745 to 3,008,233 _02868 ECD_02869: ECD_02869 - maturation protease for hydrogenase 2, at 3,008,226 to 3,008,720 _02869 ECD_02870: ECD_02870 - hydrogenase 2, large subunit, at 3,008,720 to 3,010,423 _02870 Position (kb) 3008 3009Strain fitness (log2 ratio) -1 0 1 2at 3007.327 kb on + strand, within ECD_02866at 3007.327 kb on + strand, within ECD_02866at 3007.327 kb on + strand, within ECD_02866at 3007.328 kb on - strand, within ECD_02866at 3007.328 kb on - strand, within ECD_02866at 3007.328 kb on - strand, within ECD_02866at 3007.328 kb on - strand, within ECD_02866at 3007.328 kb on - strand, within ECD_02866at 3007.353 kb on + strand, within ECD_02866at 3007.353 kb on + strand, within ECD_02866at 3007.354 kb on - strand, within ECD_02866at 3007.393 kb on - strandat 3007.393 kb on - strandat 3007.556 kb on + strand, within ECD_02867at 3007.557 kb on - strand, within ECD_02867at 3007.567 kb on + strand, within ECD_02867at 3007.567 kb on + strand, within ECD_02867at 3007.568 kb on - strand, within ECD_02867at 3007.568 kb on - strand, within ECD_02867at 3007.568 kb on - strand, within ECD_02867at 3007.802 kb on + strand, within ECD_02868at 3007.802 kb on + strand, within ECD_02868at 3007.803 kb on - strand, within ECD_02868at 3007.803 kb on - strand, within ECD_02868at 3007.921 kb on - strand, within ECD_02868at 3007.960 kb on + strand, within ECD_02868at 3007.969 kb on - strand, within ECD_02868at 3007.969 kb on - strand, within ECD_02868at 3008.112 kb on + strand, within ECD_02868at 3008.112 kb on + strand, within ECD_02868at 3008.113 kb on - strand, within ECD_02868at 3008.113 kb on - strand, within ECD_02868at 3008.187 kb on - strandat 3008.220 kb on - strandat 3008.543 kb on + strand, within ECD_02869at 3008.632 kb on + strand, within ECD_02869at 3008.633 kb on - strand, within ECD_02869at 3008.633 kb on - strand, within ECD_02869at 3008.714 kb on + strandat 3008.715 kb on - strandat 3008.721 kb on + strandat 3008.765 kb on + strandat 3008.766 kb on - strandat 3008.766 kb on - strandat 3008.766 kb on - strandat 3008.810 kb on - strandat 3008.872 kb on - strandat 3008.938 kb on - strand, within ECD_02870at 3009.149 kb on - strand, within ECD_02870at 3009.149 kb on - strand, within ECD_02870at 3009.164 kb on - strand, within ECD_02870at 3009.194 kb on - strand, within ECD_02870at 3009.278 kb on - strand, within ECD_02870at 3009.278 kb on - strand, within ECD_02870at 3009.278 kb on - strand, within ECD_02870at 3009.278 kb on - strand, within ECD_02870at 3009.281 kb on - strand, within ECD_02870at 3009.339 kb on + strand, within ECD_02870at 3009.340 kb on - strand, within ECD_02870at 3009.366 kb on + strand, within ECD_02870at 3009.367 kb on - strand, within ECD_02870at 3009.417 kb on + strand, within ECD_02870at 3009.417 kb on + strand, within ECD_02870at 3009.418 kb on - strand, within ECD_02870at 3009.460 kb on - strand, within ECD_02870at 3009.490 kb on - strand, within ECD_02870at 3009.580 kb on - strand, within ECD_02870at 3009.580 kb on - strand, within ECD_02870at 3009.632 kb on - strand, within ECD_02870at 3009.632 kb on - strand, within ECD_02870at 3009.650 kb on - strand, within ECD_02870at 3009.650 kb on - strand, within ECD_02870at 3009.650 kb on - strand, within ECD_02870at 3009.650 kb on - strand, within ECD_02870at 3009.650 kb on - strand, within ECD_02870at 3009.651 kb on + strand, within ECD_02870at 3009.651 kb on + strand, within ECD_02870at 3009.651 kb on + strand, within ECD_02870at 3009.652 kb on - strand, within ECD_02870at 3009.699 kb on + strand, within ECD_02870at 3009.699 kb on + strand, within ECD_02870at 3009.699 kb on + strand, within ECD_02870at 3009.699 kb on + strand, within ECD_02870at 3009.699 kb on + strand, within ECD_02870at 3009.699 kb on + strand, within ECD_02870at 3009.699 kb on + strand, within ECD_02870at 3009.700 kb on - strand, within ECD_02870at 3009.700 kb on - strand, within ECD_02870

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_TnN
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3,007,327 + ECD_02866 0.71 +2.0
3,007,327 + ECD_02866 0.71 +0.3
3,007,327 + ECD_02866 0.71 +0.3
3,007,328 - ECD_02866 0.71 +1.9
3,007,328 - ECD_02866 0.71 -0.7
3,007,328 - ECD_02866 0.71 +0.0
3,007,328 - ECD_02866 0.71 -0.7
3,007,328 - ECD_02866 0.71 +0.2
3,007,353 + ECD_02866 0.82 +0.1
3,007,353 + ECD_02866 0.82 +0.9
3,007,354 - ECD_02866 0.82 -0.8
3,007,393 - -0.0
3,007,393 - +1.4
3,007,556 + ECD_02867 0.42 +0.5
3,007,557 - ECD_02867 0.43 -1.5
3,007,567 + ECD_02867 0.46 +0.1
3,007,567 + ECD_02867 0.46 -0.2
3,007,568 - ECD_02867 0.46 -0.7
3,007,568 - ECD_02867 0.46 +0.1
3,007,568 - ECD_02867 0.46 +0.3
3,007,802 + ECD_02868 0.12 +0.9
3,007,802 + ECD_02868 0.12 +0.1
3,007,803 - ECD_02868 0.12 -0.4
3,007,803 - ECD_02868 0.12 +0.2
3,007,921 - ECD_02868 0.36 +0.9
3,007,960 + ECD_02868 0.44 -0.0
3,007,969 - ECD_02868 0.46 -0.7
3,007,969 - ECD_02868 0.46 +0.4
3,008,112 + ECD_02868 0.75 +0.4
3,008,112 + ECD_02868 0.75 +0.2
3,008,113 - ECD_02868 0.75 +0.1
3,008,113 - ECD_02868 0.75 -0.3
3,008,187 - -0.7
3,008,220 - -0.1
3,008,543 + ECD_02869 0.64 -0.5
3,008,632 + ECD_02869 0.82 +0.1
3,008,633 - ECD_02869 0.82 -0.8
3,008,633 - ECD_02869 0.82 -0.5
3,008,714 + +0.9
3,008,715 - -1.7
3,008,721 + -0.2
3,008,765 + +0.3
3,008,766 - -0.1
3,008,766 - +1.7
3,008,766 - -1.0
3,008,810 - +0.1
3,008,872 - -0.1
3,008,938 - ECD_02870 0.13 +0.9
3,009,149 - ECD_02870 0.25 -0.0
3,009,149 - ECD_02870 0.25 -1.0
3,009,164 - ECD_02870 0.26 -0.5
3,009,194 - ECD_02870 0.28 +0.6
3,009,278 - ECD_02870 0.33 -0.5
3,009,278 - ECD_02870 0.33 +0.0
3,009,278 - ECD_02870 0.33 +1.0
3,009,278 - ECD_02870 0.33 +0.1
3,009,281 - ECD_02870 0.33 +0.7
3,009,339 + ECD_02870 0.36 -0.9
3,009,340 - ECD_02870 0.36 -0.3
3,009,366 + ECD_02870 0.38 +0.4
3,009,367 - ECD_02870 0.38 +0.2
3,009,417 + ECD_02870 0.41 -1.7
3,009,417 + ECD_02870 0.41 -0.2
3,009,418 - ECD_02870 0.41 +0.4
3,009,460 - ECD_02870 0.43 -0.4
3,009,490 - ECD_02870 0.45 -0.7
3,009,580 - ECD_02870 0.50 +0.1
3,009,580 - ECD_02870 0.50 +0.2
3,009,632 - ECD_02870 0.54 +0.8
3,009,632 - ECD_02870 0.54 +0.7
3,009,650 - ECD_02870 0.55 -0.2
3,009,650 - ECD_02870 0.55 +0.9
3,009,650 - ECD_02870 0.55 +0.6
3,009,650 - ECD_02870 0.55 +0.9
3,009,650 - ECD_02870 0.55 +0.6
3,009,651 + ECD_02870 0.55 -1.1
3,009,651 + ECD_02870 0.55 +0.1
3,009,651 + ECD_02870 0.55 -0.5
3,009,652 - ECD_02870 0.55 -0.3
3,009,699 + ECD_02870 0.57 +0.4
3,009,699 + ECD_02870 0.57 +0.6
3,009,699 + ECD_02870 0.57 +1.1
3,009,699 + ECD_02870 0.57 +1.1
3,009,699 + ECD_02870 0.57 -0.3
3,009,699 + ECD_02870 0.57 -0.6
3,009,699 + ECD_02870 0.57 +0.0
3,009,700 - ECD_02870 0.58 -0.1
3,009,700 - ECD_02870 0.58 -0.1

Or see this region's nucleotide sequence