Experiment: Control_TnN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02518 and ECD_02519 are separated by 310 nucleotides ECD_02519 and ECD_02520 are separated by 20 nucleotides ECD_02520 and ECD_02521 are separated by 0 nucleotides
ECD_02518: ECD_02518 - 4-aminobutyrate aminotransferase, PLP-dependent, at 2,632,522 to 2,633,802
_02518
ECD_02519: ECD_02519 - gamma-aminobutyrate transporter, at 2,634,113 to 2,635,513
_02519
ECD_02520: ECD_02520 - transcriptional repressor of csiD, at 2,635,534 to 2,636,196
_02520
ECD_02521: ECD_02521 - uncharacterized protein, at 2,636,197 to 2,636,646
_02521
Position (kb)
2634
2635
2636 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2633.164 kb on + strand, within ECD_02518 at 2633.165 kb on - strand, within ECD_02518 at 2633.184 kb on + strand, within ECD_02518 at 2633.184 kb on + strand, within ECD_02518 at 2633.184 kb on + strand, within ECD_02518 at 2633.185 kb on - strand, within ECD_02518 at 2633.185 kb on - strand, within ECD_02518 at 2633.311 kb on - strand, within ECD_02518 at 2633.375 kb on + strand, within ECD_02518 at 2633.413 kb on + strand, within ECD_02518 at 2633.413 kb on + strand, within ECD_02518 at 2633.413 kb on + strand, within ECD_02518 at 2633.414 kb on - strand, within ECD_02518 at 2633.414 kb on - strand, within ECD_02518 at 2633.698 kb on + strand at 2633.701 kb on + strand at 2633.701 kb on + strand at 2633.701 kb on + strand at 2633.701 kb on + strand at 2633.701 kb on + strand at 2633.701 kb on + strand at 2633.701 kb on + strand at 2633.701 kb on + strand at 2633.701 kb on + strand at 2633.701 kb on + strand at 2633.702 kb on - strand at 2633.702 kb on - strand at 2633.702 kb on - strand at 2633.702 kb on - strand at 2633.702 kb on - strand at 2633.702 kb on - strand at 2633.723 kb on + strand at 2633.723 kb on + strand at 2633.724 kb on - strand at 2633.804 kb on + strand at 2633.804 kb on + strand at 2633.804 kb on + strand at 2633.804 kb on + strand at 2633.804 kb on + strand at 2633.805 kb on - strand at 2633.805 kb on - strand at 2633.805 kb on - strand at 2633.805 kb on - strand at 2633.823 kb on + strand at 2633.823 kb on + strand at 2633.844 kb on + strand at 2634.043 kb on + strand at 2634.141 kb on + strand at 2634.181 kb on + strand at 2634.181 kb on + strand at 2634.181 kb on + strand at 2634.182 kb on - strand at 2634.182 kb on - strand at 2634.255 kb on + strand, within ECD_02519 at 2634.256 kb on - strand, within ECD_02519 at 2634.290 kb on - strand, within ECD_02519 at 2634.290 kb on - strand, within ECD_02519 at 2634.353 kb on + strand, within ECD_02519 at 2634.353 kb on + strand, within ECD_02519 at 2634.354 kb on - strand, within ECD_02519 at 2634.386 kb on + strand, within ECD_02519 at 2634.387 kb on - strand, within ECD_02519 at 2634.388 kb on + strand, within ECD_02519 at 2634.388 kb on + strand, within ECD_02519 at 2634.388 kb on + strand, within ECD_02519 at 2634.389 kb on - strand, within ECD_02519 at 2634.389 kb on - strand, within ECD_02519 at 2634.389 kb on - strand, within ECD_02519 at 2634.404 kb on + strand, within ECD_02519 at 2634.405 kb on - strand, within ECD_02519 at 2634.405 kb on - strand, within ECD_02519 at 2634.405 kb on - strand, within ECD_02519 at 2634.405 kb on - strand, within ECD_02519 at 2634.495 kb on + strand, within ECD_02519 at 2634.496 kb on - strand, within ECD_02519 at 2634.532 kb on + strand, within ECD_02519 at 2634.533 kb on - strand, within ECD_02519 at 2634.537 kb on + strand, within ECD_02519 at 2634.538 kb on - strand, within ECD_02519 at 2634.538 kb on - strand, within ECD_02519 at 2634.538 kb on - strand, within ECD_02519 at 2634.538 kb on - strand, within ECD_02519 at 2634.540 kb on + strand, within ECD_02519 at 2634.540 kb on + strand, within ECD_02519 at 2634.540 kb on + strand, within ECD_02519 at 2634.541 kb on - strand, within ECD_02519 at 2634.611 kb on - strand, within ECD_02519 at 2634.611 kb on - strand, within ECD_02519 at 2634.635 kb on - strand, within ECD_02519 at 2634.635 kb on - strand, within ECD_02519 at 2634.650 kb on + strand, within ECD_02519 at 2634.651 kb on - strand, within ECD_02519 at 2634.721 kb on - strand, within ECD_02519 at 2634.723 kb on + strand, within ECD_02519 at 2634.723 kb on + strand, within ECD_02519 at 2634.754 kb on + strand, within ECD_02519 at 2634.811 kb on + strand, within ECD_02519 at 2634.812 kb on - strand, within ECD_02519 at 2634.812 kb on - strand, within ECD_02519 at 2634.845 kb on - strand, within ECD_02519 at 2634.851 kb on - strand, within ECD_02519 at 2634.851 kb on - strand, within ECD_02519 at 2634.851 kb on - strand, within ECD_02519 at 2634.851 kb on - strand, within ECD_02519 at 2634.858 kb on - strand, within ECD_02519 at 2634.858 kb on - strand, within ECD_02519 at 2634.858 kb on - strand, within ECD_02519 at 2634.858 kb on - strand, within ECD_02519 at 2634.858 kb on - strand, within ECD_02519 at 2634.858 kb on - strand, within ECD_02519 at 2634.858 kb on - strand, within ECD_02519 at 2634.858 kb on - strand, within ECD_02519 at 2634.868 kb on + strand, within ECD_02519 at 2634.973 kb on - strand, within ECD_02519 at 2634.993 kb on + strand, within ECD_02519 at 2634.993 kb on + strand, within ECD_02519 at 2634.993 kb on + strand, within ECD_02519 at 2634.993 kb on + strand, within ECD_02519 at 2634.993 kb on + strand, within ECD_02519 at 2634.993 kb on + strand, within ECD_02519 at 2634.993 kb on + strand, within ECD_02519 at 2634.993 kb on + strand, within ECD_02519 at 2634.993 kb on + strand, within ECD_02519 at 2635.028 kb on + strand, within ECD_02519 at 2635.028 kb on + strand, within ECD_02519 at 2635.028 kb on + strand, within ECD_02519 at 2635.028 kb on + strand, within ECD_02519 at 2635.029 kb on - strand, within ECD_02519 at 2635.049 kb on + strand, within ECD_02519 at 2635.049 kb on + strand, within ECD_02519 at 2635.050 kb on - strand, within ECD_02519 at 2635.057 kb on - strand, within ECD_02519 at 2635.115 kb on + strand, within ECD_02519 at 2635.116 kb on - strand, within ECD_02519 at 2635.129 kb on - strand, within ECD_02519 at 2635.169 kb on + strand, within ECD_02519 at 2635.170 kb on - strand, within ECD_02519 at 2635.172 kb on + strand, within ECD_02519 at 2635.172 kb on + strand, within ECD_02519 at 2635.192 kb on + strand, within ECD_02519 at 2635.192 kb on + strand, within ECD_02519 at 2635.239 kb on + strand, within ECD_02519 at 2635.239 kb on + strand, within ECD_02519 at 2635.239 kb on + strand, within ECD_02519 at 2635.239 kb on + strand, within ECD_02519 at 2635.240 kb on - strand, within ECD_02519 at 2635.341 kb on + strand, within ECD_02519 at 2635.342 kb on - strand, within ECD_02519 at 2635.344 kb on + strand, within ECD_02519 at 2635.351 kb on + strand, within ECD_02519 at 2635.351 kb on + strand, within ECD_02519 at 2635.351 kb on + strand, within ECD_02519 at 2635.352 kb on - strand, within ECD_02519 at 2635.354 kb on + strand, within ECD_02519 at 2635.354 kb on + strand, within ECD_02519 at 2635.369 kb on - strand, within ECD_02519 at 2635.377 kb on + strand at 2635.377 kb on + strand at 2635.377 kb on + strand at 2635.378 kb on - strand at 2635.398 kb on + strand at 2635.399 kb on - strand at 2635.399 kb on - strand at 2635.419 kb on + strand at 2635.419 kb on + strand at 2635.419 kb on + strand at 2635.422 kb on + strand at 2635.435 kb on + strand at 2635.435 kb on + strand at 2635.435 kb on + strand at 2635.435 kb on + strand at 2635.436 kb on - strand at 2635.438 kb on - strand at 2635.453 kb on + strand at 2635.453 kb on + strand at 2635.501 kb on + strand at 2635.501 kb on + strand at 2635.502 kb on - strand at 2635.504 kb on + strand at 2635.542 kb on + strand at 2635.542 kb on + strand at 2635.543 kb on - strand at 2635.578 kb on + strand at 2635.579 kb on - strand at 2635.581 kb on + strand at 2635.737 kb on + strand, within ECD_02520 at 2635.737 kb on + strand, within ECD_02520 at 2635.869 kb on + strand, within ECD_02520 at 2635.938 kb on + strand, within ECD_02520 at 2635.939 kb on - strand, within ECD_02520 at 2635.969 kb on + strand, within ECD_02520 at 2635.970 kb on - strand, within ECD_02520 at 2635.970 kb on - strand, within ECD_02520 at 2636.015 kb on - strand, within ECD_02520 at 2636.022 kb on + strand, within ECD_02520 at 2636.022 kb on + strand, within ECD_02520 at 2636.023 kb on - strand, within ECD_02520 at 2636.116 kb on - strand, within ECD_02520 at 2636.151 kb on - strand at 2636.195 kb on - strand at 2636.195 kb on - strand at 2636.195 kb on - strand at 2636.195 kb on - strand at 2636.199 kb on - strand at 2636.199 kb on - strand at 2636.263 kb on - strand, within ECD_02521 at 2636.280 kb on + strand, within ECD_02521 at 2636.285 kb on + strand, within ECD_02521 at 2636.285 kb on + strand, within ECD_02521 at 2636.285 kb on + strand, within ECD_02521 at 2636.285 kb on + strand, within ECD_02521 at 2636.286 kb on - strand, within ECD_02521 at 2636.349 kb on + strand, within ECD_02521 at 2636.351 kb on + strand, within ECD_02521 at 2636.352 kb on - strand, within ECD_02521 at 2636.419 kb on - strand, within ECD_02521 at 2636.419 kb on - strand, within ECD_02521
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnN remove 2,633,164 + ECD_02518 0.50 +0.7 2,633,165 - ECD_02518 0.50 -0.7 2,633,184 + ECD_02518 0.52 -1.3 2,633,184 + ECD_02518 0.52 +0.1 2,633,184 + ECD_02518 0.52 +0.1 2,633,185 - ECD_02518 0.52 -0.0 2,633,185 - ECD_02518 0.52 +0.6 2,633,311 - ECD_02518 0.62 +0.1 2,633,375 + ECD_02518 0.67 -0.7 2,633,413 + ECD_02518 0.70 -0.2 2,633,413 + ECD_02518 0.70 +0.4 2,633,413 + ECD_02518 0.70 +1.2 2,633,414 - ECD_02518 0.70 +0.2 2,633,414 - ECD_02518 0.70 +0.4 2,633,698 + -0.3 2,633,701 + +0.8 2,633,701 + +0.8 2,633,701 + +0.7 2,633,701 + -0.1 2,633,701 + -0.2 2,633,701 + -0.9 2,633,701 + +0.1 2,633,701 + -1.2 2,633,701 + +1.4 2,633,701 + -0.2 2,633,702 - +0.5 2,633,702 - +0.9 2,633,702 - +0.4 2,633,702 - +1.2 2,633,702 - +0.9 2,633,702 - -0.4 2,633,723 + -0.5 2,633,723 + +0.2 2,633,724 - -1.7 2,633,804 + +0.4 2,633,804 + +0.3 2,633,804 + +0.3 2,633,804 + -0.1 2,633,804 + -0.1 2,633,805 - +0.6 2,633,805 - +0.3 2,633,805 - +0.3 2,633,805 - +0.7 2,633,823 + -0.0 2,633,823 + -0.1 2,633,844 + +1.2 2,634,043 + -0.1 2,634,141 + +0.8 2,634,181 + -0.3 2,634,181 + -0.1 2,634,181 + +0.7 2,634,182 - +0.1 2,634,182 - +1.1 2,634,255 + ECD_02519 0.10 -1.1 2,634,256 - ECD_02519 0.10 -0.8 2,634,290 - ECD_02519 0.13 -0.5 2,634,290 - ECD_02519 0.13 -1.0 2,634,353 + ECD_02519 0.17 +0.6 2,634,353 + ECD_02519 0.17 -0.5 2,634,354 - ECD_02519 0.17 +0.4 2,634,386 + ECD_02519 0.19 +0.1 2,634,387 - ECD_02519 0.20 -1.0 2,634,388 + ECD_02519 0.20 +0.2 2,634,388 + ECD_02519 0.20 -0.6 2,634,388 + ECD_02519 0.20 +1.3 2,634,389 - ECD_02519 0.20 +0.2 2,634,389 - ECD_02519 0.20 -2.0 2,634,389 - ECD_02519 0.20 -0.0 2,634,404 + ECD_02519 0.21 +1.1 2,634,405 - ECD_02519 0.21 -1.0 2,634,405 - ECD_02519 0.21 +0.4 2,634,405 - ECD_02519 0.21 -0.6 2,634,405 - ECD_02519 0.21 -0.7 2,634,495 + ECD_02519 0.27 +0.1 2,634,496 - ECD_02519 0.27 +0.6 2,634,532 + ECD_02519 0.30 +0.4 2,634,533 - ECD_02519 0.30 +0.0 2,634,537 + ECD_02519 0.30 +0.2 2,634,538 - ECD_02519 0.30 -0.5 2,634,538 - ECD_02519 0.30 -0.3 2,634,538 - ECD_02519 0.30 +0.4 2,634,538 - ECD_02519 0.30 -1.5 2,634,540 + ECD_02519 0.30 +0.4 2,634,540 + ECD_02519 0.30 -0.2 2,634,540 + ECD_02519 0.30 +0.1 2,634,541 - ECD_02519 0.31 +1.0 2,634,611 - ECD_02519 0.36 -0.5 2,634,611 - ECD_02519 0.36 +0.3 2,634,635 - ECD_02519 0.37 -1.6 2,634,635 - ECD_02519 0.37 -0.0 2,634,650 + ECD_02519 0.38 +0.5 2,634,651 - ECD_02519 0.38 +0.1 2,634,721 - ECD_02519 0.43 -0.0 2,634,723 + ECD_02519 0.44 +1.2 2,634,723 + ECD_02519 0.44 -0.3 2,634,754 + ECD_02519 0.46 -0.3 2,634,811 + ECD_02519 0.50 -0.4 2,634,812 - ECD_02519 0.50 +2.1 2,634,812 - ECD_02519 0.50 -0.9 2,634,845 - ECD_02519 0.52 -0.5 2,634,851 - ECD_02519 0.53 -0.0 2,634,851 - ECD_02519 0.53 -0.1 2,634,851 - ECD_02519 0.53 +0.1 2,634,851 - ECD_02519 0.53 -0.2 2,634,858 - ECD_02519 0.53 +1.2 2,634,858 - ECD_02519 0.53 -0.6 2,634,858 - ECD_02519 0.53 -1.7 2,634,858 - ECD_02519 0.53 -0.1 2,634,858 - ECD_02519 0.53 +0.1 2,634,858 - ECD_02519 0.53 -0.0 2,634,858 - ECD_02519 0.53 -0.3 2,634,858 - ECD_02519 0.53 -1.2 2,634,868 + ECD_02519 0.54 -0.8 2,634,973 - ECD_02519 0.61 +1.1 2,634,993 + ECD_02519 0.63 +0.1 2,634,993 + ECD_02519 0.63 -0.3 2,634,993 + ECD_02519 0.63 +0.1 2,634,993 + ECD_02519 0.63 -1.2 2,634,993 + ECD_02519 0.63 +0.1 2,634,993 + ECD_02519 0.63 +0.4 2,634,993 + ECD_02519 0.63 -0.4 2,634,993 + ECD_02519 0.63 -1.8 2,634,993 + ECD_02519 0.63 -0.9 2,635,028 + ECD_02519 0.65 +0.6 2,635,028 + ECD_02519 0.65 +0.2 2,635,028 + ECD_02519 0.65 -0.1 2,635,028 + ECD_02519 0.65 -0.5 2,635,029 - ECD_02519 0.65 +0.9 2,635,049 + ECD_02519 0.67 -0.2 2,635,049 + ECD_02519 0.67 +0.9 2,635,050 - ECD_02519 0.67 -0.9 2,635,057 - ECD_02519 0.67 +0.3 2,635,115 + ECD_02519 0.72 -0.0 2,635,116 - ECD_02519 0.72 -0.6 2,635,129 - ECD_02519 0.73 +0.7 2,635,169 + ECD_02519 0.75 +0.1 2,635,170 - ECD_02519 0.75 -0.1 2,635,172 + ECD_02519 0.76 +0.2 2,635,172 + ECD_02519 0.76 -1.0 2,635,192 + ECD_02519 0.77 -0.6 2,635,192 + ECD_02519 0.77 -0.5 2,635,239 + ECD_02519 0.80 -0.4 2,635,239 + ECD_02519 0.80 +0.7 2,635,239 + ECD_02519 0.80 -0.1 2,635,239 + ECD_02519 0.80 +0.4 2,635,240 - ECD_02519 0.80 +0.1 2,635,341 + ECD_02519 0.88 +0.6 2,635,342 - ECD_02519 0.88 -0.9 2,635,344 + ECD_02519 0.88 -0.9 2,635,351 + ECD_02519 0.88 -0.6 2,635,351 + ECD_02519 0.88 -0.4 2,635,351 + ECD_02519 0.88 +0.1 2,635,352 - ECD_02519 0.88 -0.2 2,635,354 + ECD_02519 0.89 -0.4 2,635,354 + ECD_02519 0.89 +0.8 2,635,369 - ECD_02519 0.90 +1.0 2,635,377 + -0.0 2,635,377 + +0.1 2,635,377 + +1.0 2,635,378 - +0.9 2,635,398 + -0.5 2,635,399 - -0.0 2,635,399 - -1.3 2,635,419 + +1.4 2,635,419 + -1.3 2,635,419 + -1.4 2,635,422 + +0.6 2,635,435 + +0.2 2,635,435 + +0.3 2,635,435 + -0.1 2,635,435 + -0.6 2,635,436 - +0.5 2,635,438 - +0.0 2,635,453 + -0.6 2,635,453 + +0.4 2,635,501 + -0.5 2,635,501 + +0.3 2,635,502 - +0.6 2,635,504 + +0.2 2,635,542 + +0.8 2,635,542 + +1.1 2,635,543 - -0.6 2,635,578 + -0.1 2,635,579 - -0.2 2,635,581 + +0.4 2,635,737 + ECD_02520 0.31 -2.9 2,635,737 + ECD_02520 0.31 +0.5 2,635,869 + ECD_02520 0.51 +0.6 2,635,938 + ECD_02520 0.61 +0.4 2,635,939 - ECD_02520 0.61 +0.9 2,635,969 + ECD_02520 0.66 +0.4 2,635,970 - ECD_02520 0.66 +0.7 2,635,970 - ECD_02520 0.66 +1.8 2,636,015 - ECD_02520 0.73 -1.9 2,636,022 + ECD_02520 0.74 -0.4 2,636,022 + ECD_02520 0.74 +0.6 2,636,023 - ECD_02520 0.74 +0.3 2,636,116 - ECD_02520 0.88 -0.5 2,636,151 - +0.2 2,636,195 - -0.5 2,636,195 - -1.9 2,636,195 - -0.1 2,636,195 - -0.3 2,636,199 - -1.7 2,636,199 - +0.2 2,636,263 - ECD_02521 0.15 -0.1 2,636,280 + ECD_02521 0.18 -1.0 2,636,285 + ECD_02521 0.20 +1.8 2,636,285 + ECD_02521 0.20 -0.0 2,636,285 + ECD_02521 0.20 +0.4 2,636,285 + ECD_02521 0.20 +0.9 2,636,286 - ECD_02521 0.20 +0.0 2,636,349 + ECD_02521 0.34 +0.9 2,636,351 + ECD_02521 0.34 -0.3 2,636,352 - ECD_02521 0.34 +0.1 2,636,419 - ECD_02521 0.49 +0.2 2,636,419 - ECD_02521 0.49 +0.6
Or see this region's nucleotide sequence