Experiment: Control_TnN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02446 and ECD_02447 overlap by 11 nucleotides ECD_02447 and ECD_02448 are separated by 164 nucleotides
ECD_02446: ECD_02446 - response regulator regulating glmY sRNA in two-component system with sensor protein GlrK, at 2,553,274 to 2,554,608
_02446
ECD_02447: ECD_02447 - putative outer membrane protein modulating the QseEF response, at 2,554,598 to 2,555,311
_02447
ECD_02448: ECD_02448 - sensor protein kinase regulating glmY sRNA in two-component system with response regulator GlrR, at 2,555,476 to 2,556,903
_02448
Position (kb)
2554
2555
2556 Strain fitness (log2 ratio)
-2
-1
0
1 at 2553.621 kb on + strand, within ECD_02446 at 2553.621 kb on + strand, within ECD_02446 at 2553.622 kb on - strand, within ECD_02446 at 2553.729 kb on - strand, within ECD_02446 at 2553.843 kb on + strand, within ECD_02446 at 2554.036 kb on - strand, within ECD_02446 at 2554.036 kb on - strand, within ECD_02446 at 2554.039 kb on - strand, within ECD_02446 at 2554.039 kb on - strand, within ECD_02446 at 2554.044 kb on + strand, within ECD_02446 at 2554.044 kb on + strand, within ECD_02446 at 2554.057 kb on - strand, within ECD_02446 at 2554.269 kb on - strand, within ECD_02446 at 2554.271 kb on - strand, within ECD_02446 at 2554.306 kb on - strand, within ECD_02446 at 2554.344 kb on + strand, within ECD_02446 at 2554.345 kb on - strand, within ECD_02446 at 2554.417 kb on - strand, within ECD_02446 at 2554.453 kb on + strand, within ECD_02446 at 2554.454 kb on - strand, within ECD_02446 at 2554.520 kb on + strand at 2554.520 kb on + strand at 2554.521 kb on - strand at 2554.585 kb on + strand at 2554.586 kb on - strand at 2554.599 kb on + strand at 2554.600 kb on - strand at 2554.760 kb on + strand, within ECD_02447 at 2554.760 kb on + strand, within ECD_02447 at 2554.786 kb on + strand, within ECD_02447 at 2554.786 kb on + strand, within ECD_02447 at 2554.787 kb on - strand, within ECD_02447 at 2554.884 kb on + strand, within ECD_02447 at 2554.916 kb on - strand, within ECD_02447 at 2554.920 kb on - strand, within ECD_02447 at 2554.996 kb on + strand, within ECD_02447 at 2554.997 kb on - strand, within ECD_02447 at 2554.997 kb on - strand, within ECD_02447 at 2555.026 kb on - strand, within ECD_02447 at 2555.119 kb on + strand, within ECD_02447 at 2555.161 kb on - strand, within ECD_02447 at 2555.218 kb on + strand, within ECD_02447 at 2555.324 kb on + strand at 2555.394 kb on + strand at 2555.394 kb on + strand at 2555.394 kb on + strand at 2555.394 kb on + strand at 2555.399 kb on - strand at 2555.403 kb on + strand at 2555.404 kb on - strand at 2555.404 kb on - strand at 2555.404 kb on - strand at 2555.404 kb on - strand at 2555.445 kb on + strand at 2555.571 kb on + strand at 2555.572 kb on - strand at 2555.591 kb on - strand at 2555.709 kb on + strand, within ECD_02448 at 2555.709 kb on + strand, within ECD_02448 at 2555.710 kb on - strand, within ECD_02448 at 2555.712 kb on - strand, within ECD_02448 at 2555.712 kb on - strand, within ECD_02448 at 2555.712 kb on - strand, within ECD_02448 at 2555.890 kb on - strand, within ECD_02448
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnN remove 2,553,621 + ECD_02446 0.26 -0.4 2,553,621 + ECD_02446 0.26 -0.7 2,553,622 - ECD_02446 0.26 -0.1 2,553,729 - ECD_02446 0.34 -0.2 2,553,843 + ECD_02446 0.43 +0.1 2,554,036 - ECD_02446 0.57 -0.0 2,554,036 - ECD_02446 0.57 -0.4 2,554,039 - ECD_02446 0.57 +0.0 2,554,039 - ECD_02446 0.57 +0.4 2,554,044 + ECD_02446 0.58 -0.8 2,554,044 + ECD_02446 0.58 +0.0 2,554,057 - ECD_02446 0.59 +0.4 2,554,269 - ECD_02446 0.75 +0.1 2,554,271 - ECD_02446 0.75 -1.5 2,554,306 - ECD_02446 0.77 +1.1 2,554,344 + ECD_02446 0.80 -1.5 2,554,345 - ECD_02446 0.80 +0.8 2,554,417 - ECD_02446 0.86 +0.3 2,554,453 + ECD_02446 0.88 -0.4 2,554,454 - ECD_02446 0.88 -1.5 2,554,520 + +0.3 2,554,520 + +0.4 2,554,521 - -0.3 2,554,585 + -0.2 2,554,586 - +0.7 2,554,599 + -0.6 2,554,600 - +0.6 2,554,760 + ECD_02447 0.23 +0.1 2,554,760 + ECD_02447 0.23 -0.8 2,554,786 + ECD_02447 0.26 -0.2 2,554,786 + ECD_02447 0.26 -0.3 2,554,787 - ECD_02447 0.26 -0.0 2,554,884 + ECD_02447 0.40 -0.6 2,554,916 - ECD_02447 0.45 -0.5 2,554,920 - ECD_02447 0.45 -0.1 2,554,996 + ECD_02447 0.56 -0.3 2,554,997 - ECD_02447 0.56 -0.1 2,554,997 - ECD_02447 0.56 -1.5 2,555,026 - ECD_02447 0.60 -0.3 2,555,119 + ECD_02447 0.73 -0.7 2,555,161 - ECD_02447 0.79 +1.0 2,555,218 + ECD_02447 0.87 -1.2 2,555,324 + -0.1 2,555,394 + +1.1 2,555,394 + +1.0 2,555,394 + +0.9 2,555,394 + +0.3 2,555,399 - -0.3 2,555,403 + -0.8 2,555,404 - -0.3 2,555,404 - +0.3 2,555,404 - -0.1 2,555,404 - +0.8 2,555,445 + -1.5 2,555,571 + +1.4 2,555,572 - +0.7 2,555,591 - -0.3 2,555,709 + ECD_02448 0.16 +0.3 2,555,709 + ECD_02448 0.16 +0.2 2,555,710 - ECD_02448 0.16 -1.9 2,555,712 - ECD_02448 0.17 -0.1 2,555,712 - ECD_02448 0.17 +0.4 2,555,712 - ECD_02448 0.17 +0.4 2,555,890 - ECD_02448 0.29 -0.8
Or see this region's nucleotide sequence