Experiment: Control_TnN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02080 and ECD_02081 are separated by 141 nucleotides ECD_02081 and ECD_02082 are separated by 16 nucleotides ECD_02082 and ECD_02083 are separated by 257 nucleotides
ECD_02080: ECD_02080 - galactose- and fucose-inducible galactose regulon transcriptional isorepressor; mgl operon transcriptional repressor; autorepressor, at 2,135,527 to 2,136,567
_02080
ECD_02081: ECD_02081 - DUF418 family putative inner membrane protein, at 2,136,709 to 2,137,866
_02081
ECD_02082: ECD_02082 - GTP cyclohydrolase I, at 2,137,883 to 2,138,551
_02082
ECD_02083: ECD_02083 - S-formylglutathione hydrolase, at 2,138,809 to 2,139,645
_02083
Position (kb)
2136
2137
2138 Strain fitness (log2 ratio)
-1
0
1 at 2135.773 kb on + strand, within ECD_02080 at 2135.845 kb on + strand, within ECD_02080 at 2136.034 kb on - strand, within ECD_02080 at 2136.275 kb on + strand, within ECD_02080 at 2136.276 kb on - strand, within ECD_02080 at 2136.276 kb on - strand, within ECD_02080 at 2136.297 kb on - strand, within ECD_02080 at 2136.568 kb on - strand at 2136.568 kb on - strand at 2136.634 kb on + strand at 2136.723 kb on + strand at 2136.807 kb on + strand at 2136.808 kb on - strand at 2136.932 kb on + strand, within ECD_02081 at 2137.072 kb on + strand, within ECD_02081 at 2137.072 kb on + strand, within ECD_02081 at 2137.073 kb on - strand, within ECD_02081 at 2137.187 kb on - strand, within ECD_02081 at 2137.265 kb on + strand, within ECD_02081 at 2137.266 kb on - strand, within ECD_02081 at 2137.568 kb on - strand, within ECD_02081 at 2137.808 kb on - strand at 2138.607 kb on - strand at 2138.617 kb on - strand at 2138.628 kb on - strand at 2138.729 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnN remove 2,135,773 + ECD_02080 0.24 +0.6 2,135,845 + ECD_02080 0.31 +0.5 2,136,034 - ECD_02080 0.49 +0.3 2,136,275 + ECD_02080 0.72 -0.3 2,136,276 - ECD_02080 0.72 +0.1 2,136,276 - ECD_02080 0.72 +0.6 2,136,297 - ECD_02080 0.74 +0.1 2,136,568 - +0.5 2,136,568 - -1.1 2,136,634 + +0.8 2,136,723 + +0.3 2,136,807 + +0.9 2,136,808 - +0.1 2,136,932 + ECD_02081 0.19 +0.0 2,137,072 + ECD_02081 0.31 -0.6 2,137,072 + ECD_02081 0.31 -0.9 2,137,073 - ECD_02081 0.31 +0.3 2,137,187 - ECD_02081 0.41 -1.0 2,137,265 + ECD_02081 0.48 -0.7 2,137,266 - ECD_02081 0.48 -1.5 2,137,568 - ECD_02081 0.74 -0.4 2,137,808 - +0.2 2,138,607 - -0.2 2,138,617 - -0.4 2,138,628 - -0.3 2,138,729 - +0.1
Or see this region's nucleotide sequence