Strain Fitness in Escherichia coli BL21 around ECD_01966

Experiment: Control_TnN

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_01964 and ECD_01965 are separated by 2 nucleotidesECD_01965 and ECD_01966 are separated by 92 nucleotidesECD_01966 and ECD_01967 are separated by 2 nucleotidesECD_01967 and ECD_01968 are separated by 5 nucleotides ECD_01964: ECD_01964 - putative acyl transferase, at 2,031,074 to 2,031,562 _01964 ECD_01965: ECD_01965 - putative glycosyl transferase, at 2,031,565 to 2,032,404 _01965 ECD_01966: ECD_01966 - colanic acid production tyrosine-protein kinase; autokinase; Ugd phosphorylase, at 2,032,497 to 2,034,659 _01966 ECD_01967: ECD_01967 - colanic acid production protein-tyrosine-phosphatase; Wzc-P dephosphorylase, at 2,034,662 to 2,035,105 _01967 ECD_01968: ECD_01968 - colanic acid export protein; outer membrane auxillary lipoprotein, at 2,035,111 to 2,036,250 _01968 Position (kb) 2032 2033 2034 2035Strain fitness (log2 ratio) -2 -1 0 1at 2031.509 kb on + strand, within ECD_01964at 2031.642 kb on + strandat 2031.643 kb on - strandat 2031.942 kb on + strand, within ECD_01965at 2031.972 kb on - strand, within ECD_01965at 2032.046 kb on + strand, within ECD_01965at 2032.141 kb on - strand, within ECD_01965at 2032.173 kb on + strand, within ECD_01965at 2032.219 kb on - strand, within ECD_01965at 2032.374 kb on + strandat 2032.376 kb on + strandat 2032.376 kb on + strandat 2032.377 kb on - strandat 2032.422 kb on + strandat 2032.753 kb on + strand, within ECD_01966at 2032.872 kb on - strand, within ECD_01966at 2033.260 kb on + strand, within ECD_01966at 2033.261 kb on - strand, within ECD_01966at 2033.501 kb on + strand, within ECD_01966at 2033.824 kb on - strand, within ECD_01966at 2033.902 kb on + strand, within ECD_01966at 2034.060 kb on - strand, within ECD_01966at 2034.663 kb on + strandat 2034.880 kb on - strand, within ECD_01967at 2035.089 kb on - strandat 2035.099 kb on + strandat 2035.164 kb on + strandat 2035.224 kb on - strandat 2035.236 kb on - strand, within ECD_01968at 2035.298 kb on + strand, within ECD_01968at 2035.302 kb on + strand, within ECD_01968

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Control_TnN
remove
2,031,509 + ECD_01964 0.89 -1.0
2,031,642 + +0.1
2,031,643 - -0.9
2,031,942 + ECD_01965 0.45 +0.1
2,031,972 - ECD_01965 0.48 -1.1
2,032,046 + ECD_01965 0.57 +0.8
2,032,141 - ECD_01965 0.69 +0.9
2,032,173 + ECD_01965 0.72 -0.2
2,032,219 - ECD_01965 0.78 -0.5
2,032,374 + +0.3
2,032,376 + +0.6
2,032,376 + -0.5
2,032,377 - -0.4
2,032,422 + -0.6
2,032,753 + ECD_01966 0.12 -0.5
2,032,872 - ECD_01966 0.17 -0.3
2,033,260 + ECD_01966 0.35 -1.5
2,033,261 - ECD_01966 0.35 +0.3
2,033,501 + ECD_01966 0.46 -0.1
2,033,824 - ECD_01966 0.61 -1.8
2,033,902 + ECD_01966 0.65 -1.1
2,034,060 - ECD_01966 0.72 -0.5
2,034,663 + -0.7
2,034,880 - ECD_01967 0.49 -0.7
2,035,089 - +0.5
2,035,099 + +1.1
2,035,164 + -0.7
2,035,224 - +0.2
2,035,236 - ECD_01968 0.11 +0.6
2,035,298 + ECD_01968 0.16 +1.2
2,035,302 + ECD_01968 0.17 -0.7

Or see this region's nucleotide sequence