Experiment: Control_TnN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01963 and ECD_01964 overlap by 4 nucleotides ECD_01964 and ECD_01965 are separated by 2 nucleotides ECD_01965 and ECD_01966 are separated by 92 nucleotides
ECD_01963: ECD_01963 - putative glycosyl transferase, at 2,029,860 to 2,031,077
_01963
ECD_01964: ECD_01964 - putative acyl transferase, at 2,031,074 to 2,031,562
_01964
ECD_01965: ECD_01965 - putative glycosyl transferase, at 2,031,565 to 2,032,404
_01965
ECD_01966: ECD_01966 - colanic acid production tyrosine-protein kinase; autokinase; Ugd phosphorylase, at 2,032,497 to 2,034,659
_01966
Position (kb)
2031
2032 Strain fitness (log2 ratio)
-1
0
1
2 at 2030.123 kb on - strand, within ECD_01963 at 2030.244 kb on - strand, within ECD_01963 at 2030.252 kb on + strand, within ECD_01963 at 2030.252 kb on + strand, within ECD_01963 at 2030.253 kb on - strand, within ECD_01963 at 2030.253 kb on - strand, within ECD_01963 at 2030.253 kb on - strand, within ECD_01963 at 2031.349 kb on + strand, within ECD_01964 at 2031.353 kb on - strand, within ECD_01964 at 2031.509 kb on + strand, within ECD_01964 at 2031.642 kb on + strand at 2031.643 kb on - strand at 2031.942 kb on + strand, within ECD_01965 at 2031.972 kb on - strand, within ECD_01965 at 2032.046 kb on + strand, within ECD_01965 at 2032.141 kb on - strand, within ECD_01965 at 2032.173 kb on + strand, within ECD_01965 at 2032.219 kb on - strand, within ECD_01965 at 2032.374 kb on + strand at 2032.376 kb on + strand at 2032.376 kb on + strand at 2032.377 kb on - strand at 2032.422 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnN remove 2,030,123 - ECD_01963 0.22 -0.3 2,030,244 - ECD_01963 0.32 +0.5 2,030,252 + ECD_01963 0.32 -0.3 2,030,252 + ECD_01963 0.32 -0.1 2,030,253 - ECD_01963 0.32 +2.5 2,030,253 - ECD_01963 0.32 +0.1 2,030,253 - ECD_01963 0.32 -0.8 2,031,349 + ECD_01964 0.56 -0.1 2,031,353 - ECD_01964 0.57 -0.2 2,031,509 + ECD_01964 0.89 -1.0 2,031,642 + +0.1 2,031,643 - -0.9 2,031,942 + ECD_01965 0.45 +0.1 2,031,972 - ECD_01965 0.48 -1.1 2,032,046 + ECD_01965 0.57 +0.8 2,032,141 - ECD_01965 0.69 +0.9 2,032,173 + ECD_01965 0.72 -0.2 2,032,219 - ECD_01965 0.78 -0.5 2,032,374 + +0.3 2,032,376 + +0.6 2,032,376 + -0.5 2,032,377 - -0.4 2,032,422 + -0.6
Or see this region's nucleotide sequence