Experiment: Control_TnN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01909 and ECD_01910 are separated by 324 nucleotides ECD_01910 and ECD_01911 are separated by 171 nucleotides ECD_01911 and ECD_01912 are separated by 197 nucleotides ECD_01912 and ECD_01913 are separated by 118 nucleotides
ECD_01909: ECD_01909 - hypothetical protein, at 1,974,793 to 1,974,951
_01909
ECD_01910: ECD_01910 - UPF0265 family protein, at 1,975,276 to 1,975,605
_01910
ECD_01911: ECD_01911 - putative transporter, FUSC family inner membrane protein, at 1,975,777 to 1,976,835
_01911
ECD_01912: ECD_01912 - DNA gyrase inhibitor, at 1,977,033 to 1,977,506
_01912
ECD_01913: ECD_01913 - D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6b, at 1,977,625 to 1,978,791
_01913
Position (kb) 1975
1976
1977 Strain fitness (log2 ratio) -2
-1
0
1 at 1974.795 kb on - strand at 1975.099 kb on + strand at 1975.330 kb on - strand, within ECD_01910 at 1975.371 kb on - strand, within ECD_01910 at 1975.612 kb on - strand at 1975.621 kb on - strand at 1975.722 kb on - strand at 1975.860 kb on - strand at 1976.002 kb on + strand, within ECD_01911 at 1976.017 kb on - strand, within ECD_01911 at 1976.017 kb on - strand, within ECD_01911 at 1976.082 kb on - strand, within ECD_01911 at 1976.145 kb on - strand, within ECD_01911 at 1976.419 kb on - strand, within ECD_01911 at 1976.542 kb on + strand, within ECD_01911 at 1977.034 kb on + strand at 1977.107 kb on - strand, within ECD_01912 at 1977.281 kb on + strand, within ECD_01912 at 1977.392 kb on + strand, within ECD_01912 at 1977.397 kb on - strand, within ECD_01912 at 1977.474 kb on - strand at 1977.500 kb on - strand at 1977.800 kb on + strand, within ECD_01913
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnN remove 1,974,795 - -0.2 1,975,099 + -0.5 1,975,330 - ECD_01910 0.16 +0.2 1,975,371 - ECD_01910 0.29 +0.1 1,975,612 - -0.1 1,975,621 - -0.3 1,975,722 - -1.4 1,975,860 - +0.1 1,976,002 + ECD_01911 0.21 -0.0 1,976,017 - ECD_01911 0.23 -1.2 1,976,017 - ECD_01911 0.23 -0.2 1,976,082 - ECD_01911 0.29 -1.9 1,976,145 - ECD_01911 0.35 +0.4 1,976,419 - ECD_01911 0.61 -0.2 1,976,542 + ECD_01911 0.72 -1.1 1,977,034 + -0.2 1,977,107 - ECD_01912 0.16 +1.0 1,977,281 + ECD_01912 0.52 +0.2 1,977,392 + ECD_01912 0.76 +0.2 1,977,397 - ECD_01912 0.77 +0.5 1,977,474 - -1.0 1,977,500 - +1.1 1,977,800 + ECD_01913 0.15 +0.3
Or see this region's nucleotide sequence