Strain Fitness in Escherichia coli BL21 around ECD_01368

Experiment: Control_TnN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01366 and ECD_01367 are separated by 50 nucleotidesECD_01367 and ECD_01368 are separated by 200 nucleotidesECD_01368 and ECD_01369 are separated by 271 nucleotides ECD_01366: ECD_01366 - putative phosphatase inner membrane protein, at 1,434,196 to 1,435,488 _01366 ECD_01367: ECD_01367 - NADH-azoreductase, FMN-dependent, at 1,435,539 to 1,436,144 _01367 ECD_01368: ECD_01368 - putative ATP-dependent helicase, at 1,436,345 to 1,440,247 _01368 ECD_01369: ECD_01369 - DUF218 superfamily protein, SAM-binding, at 1,440,519 to 1,441,319 _01369 Position (kb) 1436 1437 1438 1439 1440 1441Strain fitness (log2 ratio) -2 -1 0 1 2at 1435.486 kb on + strandat 1435.486 kb on + strandat 1435.512 kb on + strandat 1435.678 kb on + strand, within ECD_01367at 1435.855 kb on + strand, within ECD_01367at 1436.562 kb on - strandat 1436.581 kb on + strandat 1436.979 kb on - strand, within ECD_01368at 1437.613 kb on + strand, within ECD_01368at 1437.905 kb on - strand, within ECD_01368at 1438.136 kb on + strand, within ECD_01368at 1438.764 kb on + strand, within ECD_01368at 1439.114 kb on + strand, within ECD_01368at 1439.680 kb on + strand, within ECD_01368at 1440.163 kb on + strandat 1440.214 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_TnN
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1,435,486 + +0.7
1,435,486 + +0.8
1,435,512 + +1.4
1,435,678 + ECD_01367 0.23 -0.4
1,435,855 + ECD_01367 0.52 -0.8
1,436,562 - -0.5
1,436,581 + +2.1
1,436,979 - ECD_01368 0.16 +0.7
1,437,613 + ECD_01368 0.32 -0.5
1,437,905 - ECD_01368 0.40 +0.6
1,438,136 + ECD_01368 0.46 +0.8
1,438,764 + ECD_01368 0.62 -0.8
1,439,114 + ECD_01368 0.71 -1.2
1,439,680 + ECD_01368 0.85 -2.5
1,440,163 + -1.7
1,440,214 + +0.5

Or see this region's nucleotide sequence