Experiment: Control_TnN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01062 and ECD_01063 are separated by 10 nucleotides ECD_01063 and ECD_01064 are separated by 1 nucleotides ECD_01064 and ECD_01065 are separated by 109 nucleotides
ECD_01062: ECD_01062 - ribosomal-protein-S5-alanine N-acetyltransferase, at 1,128,132 to 1,128,716
_01062
ECD_01063: ECD_01063 - UPF0502 family protein, at 1,128,727 to 1,129,374
_01063
ECD_01064: ECD_01064 - putative oxidoreductase, at 1,129,376 to 1,130,299
_01064
ECD_01065: ECD_01065 - putative lipid II flippase, at 1,130,409 to 1,131,944
_01065
Position (kb) 1129
1130
1131 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1128.524 kb on + strand, within ECD_01062 at 1128.525 kb on - strand, within ECD_01062 at 1128.542 kb on + strand, within ECD_01062 at 1128.542 kb on + strand, within ECD_01062 at 1128.543 kb on - strand, within ECD_01062 at 1128.555 kb on - strand, within ECD_01062 at 1128.564 kb on + strand, within ECD_01062 at 1128.564 kb on + strand, within ECD_01062 at 1128.564 kb on + strand, within ECD_01062 at 1128.564 kb on + strand, within ECD_01062 at 1128.564 kb on + strand, within ECD_01062 at 1128.639 kb on + strand, within ECD_01062 at 1128.925 kb on + strand, within ECD_01063 at 1128.929 kb on + strand, within ECD_01063 at 1128.967 kb on + strand, within ECD_01063 at 1129.213 kb on + strand, within ECD_01063 at 1129.407 kb on + strand at 1129.618 kb on + strand, within ECD_01064 at 1129.819 kb on + strand, within ECD_01064 at 1129.935 kb on + strand, within ECD_01064 at 1130.011 kb on + strand, within ECD_01064 at 1130.306 kb on + strand at 1130.399 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnN remove 1,128,524 + ECD_01062 0.67 -2.0 1,128,525 - ECD_01062 0.67 +0.3 1,128,542 + ECD_01062 0.70 +0.6 1,128,542 + ECD_01062 0.70 +0.9 1,128,543 - ECD_01062 0.70 +0.6 1,128,555 - ECD_01062 0.72 +0.2 1,128,564 + ECD_01062 0.74 -0.2 1,128,564 + ECD_01062 0.74 -0.4 1,128,564 + ECD_01062 0.74 -0.1 1,128,564 + ECD_01062 0.74 -0.7 1,128,564 + ECD_01062 0.74 +0.4 1,128,639 + ECD_01062 0.87 -3.0 1,128,925 + ECD_01063 0.31 -0.1 1,128,929 + ECD_01063 0.31 -0.4 1,128,967 + ECD_01063 0.37 -0.2 1,129,213 + ECD_01063 0.75 +1.1 1,129,407 + -0.0 1,129,618 + ECD_01064 0.26 -0.4 1,129,819 + ECD_01064 0.48 -1.0 1,129,935 + ECD_01064 0.60 -0.5 1,130,011 + ECD_01064 0.69 +0.2 1,130,306 + +0.2 1,130,399 + +0.5
Or see this region's nucleotide sequence