Experiment: Control_TnN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01039 and ECD_01040 are separated by 58 nucleotides ECD_01040 and ECD_01041 are separated by 120 nucleotides ECD_01041 and ECD_01042 are separated by 94 nucleotides ECD_01042 and ECD_01043 are separated by 1 nucleotides
ECD_01039: ECD_01039 - curlin subunit, amyloid curli fibers, cryptic, at 1,107,014 to 1,107,469
_01039
ECD_01040: ECD_01040 - curli assembly protein, at 1,107,528 to 1,107,860
_01040
ECD_01041: ECD_01041 - uncharacterized protein, at 1,107,981 to 1,108,292
_01041
ECD_01042: ECD_01042 - O-acetyl-ADP-ribose deacetylase; RNase III inhibitor during cold shock; putative cardiolipin synthase C regulatory subunit, at 1,108,387 to 1,108,920
_01042
ECD_01043: ECD_01043 - stationary phase cardiolipin synthase 3, at 1,108,922 to 1,110,343
_01043
Position (kb) 1108
1109 Strain fitness (log2 ratio) -1
0
1
2 at 1107.471 kb on - strand at 1107.575 kb on + strand, within ECD_01040 at 1107.601 kb on - strand, within ECD_01040 at 1107.627 kb on - strand, within ECD_01040 at 1107.931 kb on - strand at 1108.160 kb on + strand, within ECD_01041 at 1108.287 kb on - strand at 1108.419 kb on + strand at 1108.422 kb on + strand at 1108.587 kb on + strand, within ECD_01042 at 1108.588 kb on - strand, within ECD_01042 at 1108.724 kb on - strand, within ECD_01042 at 1109.069 kb on + strand, within ECD_01043 at 1109.069 kb on + strand, within ECD_01043 at 1109.070 kb on - strand, within ECD_01043 at 1109.070 kb on - strand, within ECD_01043 at 1109.086 kb on + strand, within ECD_01043 at 1109.274 kb on - strand, within ECD_01043 at 1109.275 kb on + strand, within ECD_01043 at 1109.276 kb on - strand, within ECD_01043 at 1109.783 kb on + strand, within ECD_01043
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnN remove 1,107,471 - +1.3 1,107,575 + ECD_01040 0.14 -0.2 1,107,601 - ECD_01040 0.22 +0.7 1,107,627 - ECD_01040 0.30 +0.2 1,107,931 - +0.8 1,108,160 + ECD_01041 0.57 +0.4 1,108,287 - +0.6 1,108,419 + -0.5 1,108,422 + +1.7 1,108,587 + ECD_01042 0.37 -0.3 1,108,588 - ECD_01042 0.38 -0.7 1,108,724 - ECD_01042 0.63 -0.4 1,109,069 + ECD_01043 0.10 +0.4 1,109,069 + ECD_01043 0.10 +0.8 1,109,070 - ECD_01043 0.10 -1.1 1,109,070 - ECD_01043 0.10 -0.4 1,109,086 + ECD_01043 0.12 +0.1 1,109,274 - ECD_01043 0.25 +0.2 1,109,275 + ECD_01043 0.25 -0.0 1,109,276 - ECD_01043 0.25 +0.4 1,109,783 + ECD_01043 0.61 +2.7
Or see this region's nucleotide sequence