Strain Fitness in Escherichia coli BL21 around ECD_00953

Experiment: Control_TnN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00952 and ECD_00953 are separated by 11 nucleotidesECD_00953 and ECD_00954 are separated by 129 nucleotides ECD_00952: ECD_00952 - 23S rRNA m(2)G2445 and m(7)G2069 methyltransferases, SAM-dependent, at 1,012,933 to 1,015,041 _00952 ECD_00953: ECD_00953 - replication regulatory ABC-F family DNA-binding ATPase, at 1,015,053 to 1,016,960 _00953 ECD_00954: ECD_00954 - paraquat-inducible, SoxRS-regulated inner membrane protein, at 1,017,090 to 1,018,343 _00954 Position (kb) 1015 1016 1017Strain fitness (log2 ratio) -2 -1 0 1at 1014.115 kb on + strand, within ECD_00952at 1014.214 kb on + strand, within ECD_00952at 1014.236 kb on - strand, within ECD_00952at 1014.645 kb on + strand, within ECD_00952at 1014.649 kb on + strand, within ECD_00952at 1015.051 kb on + strandat 1015.051 kb on + strandat 1015.067 kb on + strandat 1015.707 kb on - strand, within ECD_00953at 1015.752 kb on + strand, within ECD_00953at 1016.080 kb on + strand, within ECD_00953at 1016.208 kb on + strand, within ECD_00953at 1016.273 kb on + strand, within ECD_00953at 1016.509 kb on - strand, within ECD_00953at 1016.649 kb on + strand, within ECD_00953at 1016.737 kb on + strand, within ECD_00953at 1016.737 kb on + strand, within ECD_00953at 1016.737 kb on + strand, within ECD_00953at 1016.744 kb on + strand, within ECD_00953at 1017.068 kb on - strandat 1017.306 kb on - strand, within ECD_00954at 1017.582 kb on + strand, within ECD_00954at 1017.770 kb on + strand, within ECD_00954

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_TnN
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1,014,115 + ECD_00952 0.56 -0.8
1,014,214 + ECD_00952 0.61 -0.6
1,014,236 - ECD_00952 0.62 +0.5
1,014,645 + ECD_00952 0.81 +0.8
1,014,649 + ECD_00952 0.81 +0.7
1,015,051 + -1.0
1,015,051 + +0.7
1,015,067 + +0.3
1,015,707 - ECD_00953 0.34 -1.7
1,015,752 + ECD_00953 0.37 -0.6
1,016,080 + ECD_00953 0.54 +0.3
1,016,208 + ECD_00953 0.61 -0.0
1,016,273 + ECD_00953 0.64 -2.3
1,016,509 - ECD_00953 0.76 +0.9
1,016,649 + ECD_00953 0.84 -0.6
1,016,737 + ECD_00953 0.88 -1.4
1,016,737 + ECD_00953 0.88 +0.5
1,016,737 + ECD_00953 0.88 -0.5
1,016,744 + ECD_00953 0.89 -0.5
1,017,068 - -0.0
1,017,306 - ECD_00954 0.17 -0.8
1,017,582 + ECD_00954 0.39 +0.3
1,017,770 + ECD_00954 0.54 -0.3

Or see this region's nucleotide sequence