Experiment: Control_TnN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00680 and ECD_00681 are separated by 708 nucleotides ECD_00681 and ECD_00682 overlap by 7 nucleotides ECD_00682 and ECD_00683 overlap by 1 nucleotides
ECD_00680: ECD_00680 - citrate synthase, at 711,755 to 713,038
_00680
ECD_00681: ECD_00681 - succinate dehydrogenase, membrane subunit, binds cytochrome b556, at 713,747 to 714,136
_00681
ECD_00682: ECD_00682 - succinate dehydrogenase, membrane subunit, binds cytochrome b556, at 714,130 to 714,477
_00682
ECD_00683: ECD_00683 - succinate dehydrogenase, flavoprotein subunit, at 714,477 to 716,243
_00683
Position (kb) 713
714
715 Strain fitness (log2 ratio) -1
0
1 at 712.776 kb on + strand, within ECD_00680 at 712.777 kb on - strand, within ECD_00680 at 712.792 kb on - strand, within ECD_00680 at 712.792 kb on - strand, within ECD_00680 at 712.843 kb on + strand, within ECD_00680 at 712.951 kb on + strand at 713.060 kb on - strand at 713.243 kb on - strand at 713.308 kb on - strand at 713.476 kb on + strand at 713.722 kb on + strand at 714.094 kb on + strand, within ECD_00681 at 714.094 kb on + strand, within ECD_00681 at 714.223 kb on + strand, within ECD_00682 at 714.223 kb on + strand, within ECD_00682 at 714.262 kb on + strand, within ECD_00682 at 714.263 kb on - strand, within ECD_00682 at 714.330 kb on + strand, within ECD_00682 at 714.684 kb on + strand, within ECD_00683 at 714.685 kb on - strand, within ECD_00683 at 714.708 kb on + strand, within ECD_00683 at 714.736 kb on - strand, within ECD_00683 at 714.743 kb on + strand, within ECD_00683 at 714.815 kb on + strand, within ECD_00683 at 714.819 kb on + strand, within ECD_00683 at 715.097 kb on + strand, within ECD_00683
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnN remove 712,776 + ECD_00680 0.80 -1.5 712,777 - ECD_00680 0.80 +0.4 712,792 - ECD_00680 0.81 -0.7 712,792 - ECD_00680 0.81 +0.1 712,843 + ECD_00680 0.85 -0.6 712,951 + -0.1 713,060 - +0.7 713,243 - -0.5 713,308 - -0.1 713,476 + -0.8 713,722 + +0.5 714,094 + ECD_00681 0.89 -0.4 714,094 + ECD_00681 0.89 -0.3 714,223 + ECD_00682 0.27 -0.1 714,223 + ECD_00682 0.27 -0.6 714,262 + ECD_00682 0.38 -0.1 714,263 - ECD_00682 0.38 +0.7 714,330 + ECD_00682 0.57 +0.2 714,684 + ECD_00683 0.12 -1.1 714,685 - ECD_00683 0.12 +1.3 714,708 + ECD_00683 0.13 -0.2 714,736 - ECD_00683 0.15 +1.0 714,743 + ECD_00683 0.15 -0.4 714,815 + ECD_00683 0.19 +0.3 714,819 + ECD_00683 0.19 +1.3 715,097 + ECD_00683 0.35 +1.0
Or see this region's nucleotide sequence