Experiment: Control_TnN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00468 and ECD_00469 are separated by 9 nucleotides ECD_00469 and ECD_00470 are separated by 10 nucleotides ECD_00470 and ECD_00471 overlap by 4 nucleotides
ECD_00468: ECD_00468 - putative NAD(P)-binding acyl-CoA synthetase, at 515,825 to 517,492
_00468
ECD_00469: ECD_00469 - hypothetical protein, at 517,502 to 518,761
_00469
ECD_00470: ECD_00470 - putative anaerobic allantoin catabolic oxamate carbamoyltransferase; DUF2877 family protein, at 518,772 to 519,587
_00470
ECD_00471: ECD_00471 - putative carbonate kinase, at 519,584 to 520,477
_00471
Position (kb) 517
518
519 Strain fitness (log2 ratio) -2
-1
0
1 at 516.689 kb on + strand, within ECD_00468 at 516.691 kb on + strand, within ECD_00468 at 516.833 kb on + strand, within ECD_00468 at 516.833 kb on + strand, within ECD_00468 at 517.012 kb on - strand, within ECD_00468 at 517.023 kb on + strand, within ECD_00468 at 517.024 kb on - strand, within ECD_00468 at 517.366 kb on + strand at 517.398 kb on + strand at 517.399 kb on - strand at 517.476 kb on + strand at 517.507 kb on + strand at 517.507 kb on + strand at 517.507 kb on + strand at 517.508 kb on - strand at 517.597 kb on + strand at 517.813 kb on + strand, within ECD_00469 at 517.813 kb on + strand, within ECD_00469 at 517.813 kb on + strand, within ECD_00469 at 517.975 kb on - strand, within ECD_00469 at 517.977 kb on + strand, within ECD_00469 at 518.091 kb on + strand, within ECD_00469 at 518.134 kb on + strand, within ECD_00469 at 518.285 kb on - strand, within ECD_00469 at 518.326 kb on + strand, within ECD_00469 at 518.626 kb on + strand, within ECD_00469 at 518.817 kb on + strand at 518.909 kb on + strand, within ECD_00470 at 518.962 kb on + strand, within ECD_00470 at 519.051 kb on + strand, within ECD_00470 at 519.065 kb on + strand, within ECD_00470 at 519.065 kb on + strand, within ECD_00470 at 519.066 kb on - strand, within ECD_00470 at 519.181 kb on + strand, within ECD_00470 at 519.181 kb on + strand, within ECD_00470 at 519.224 kb on + strand, within ECD_00470 at 519.252 kb on - strand, within ECD_00470 at 519.410 kb on - strand, within ECD_00470 at 519.410 kb on - strand, within ECD_00470 at 519.430 kb on - strand, within ECD_00470 at 519.483 kb on - strand, within ECD_00470 at 519.522 kb on - strand at 519.522 kb on - strand at 519.536 kb on + strand at 519.568 kb on + strand at 519.600 kb on + strand at 519.600 kb on + strand at 519.601 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnN remove 516,689 + ECD_00468 0.52 +0.9 516,691 + ECD_00468 0.52 -0.2 516,833 + ECD_00468 0.60 +0.5 516,833 + ECD_00468 0.60 +0.3 517,012 - ECD_00468 0.71 +0.7 517,023 + ECD_00468 0.72 +0.0 517,024 - ECD_00468 0.72 -0.3 517,366 + -0.2 517,398 + -0.5 517,399 - +0.3 517,476 + +0.2 517,507 + +1.3 517,507 + +0.1 517,507 + +0.9 517,508 - +0.5 517,597 + +0.1 517,813 + ECD_00469 0.25 -1.1 517,813 + ECD_00469 0.25 -2.3 517,813 + ECD_00469 0.25 -0.4 517,975 - ECD_00469 0.38 +0.4 517,977 + ECD_00469 0.38 -0.4 518,091 + ECD_00469 0.47 -0.4 518,134 + ECD_00469 0.50 -0.4 518,285 - ECD_00469 0.62 -1.0 518,326 + ECD_00469 0.65 +1.0 518,626 + ECD_00469 0.89 +0.1 518,817 + -0.1 518,909 + ECD_00470 0.17 +1.3 518,962 + ECD_00470 0.23 +0.5 519,051 + ECD_00470 0.34 -0.4 519,065 + ECD_00470 0.36 +0.0 519,065 + ECD_00470 0.36 -0.5 519,066 - ECD_00470 0.36 -0.4 519,181 + ECD_00470 0.50 +0.1 519,181 + ECD_00470 0.50 +0.8 519,224 + ECD_00470 0.55 -0.5 519,252 - ECD_00470 0.59 -0.0 519,410 - ECD_00470 0.78 +0.4 519,410 - ECD_00470 0.78 +1.0 519,430 - ECD_00470 0.81 +0.8 519,483 - ECD_00470 0.87 -1.1 519,522 - -0.9 519,522 - -1.9 519,536 + -0.9 519,568 + -0.5 519,600 + +1.7 519,600 + +0.5 519,601 - -0.2
Or see this region's nucleotide sequence