Experiment: Control_TnN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00457 and ECD_00458 are separated by 12 nucleotides ECD_00458 and ECD_00459 are separated by 99 nucleotides ECD_00459 and ECD_00460 are separated by 31 nucleotides ECD_00460 and ECD_00461 overlap by 142 nucleotides
ECD_00457: ECD_00457 - glyoxylate carboligase, at 503,061 to 504,842
_00457
ECD_00458: ECD_00458 - hydroxypyruvate isomerase, at 504,855 to 505,631
_00458
ECD_00459: ECD_00459 - tartronate semialdehyde reductase, NADH-dependent, at 505,731 to 506,609
_00459
ECD_00460: ECD_00460 - hypothetical protein, at 506,641 to 506,919
_00460
ECD_00461: ECD_00461 - putative allantoin transporter, at 506,778 to 508,232
_00461
Position (kb) 505
506
507 Strain fitness (log2 ratio) -1
0
1 at 505.807 kb on + strand at 505.807 kb on + strand at 506.004 kb on - strand, within ECD_00459 at 506.129 kb on + strand, within ECD_00459 at 506.165 kb on + strand, within ECD_00459 at 506.166 kb on - strand, within ECD_00459 at 506.515 kb on + strand, within ECD_00459 at 507.079 kb on + strand, within ECD_00461 at 507.265 kb on + strand, within ECD_00461 at 507.351 kb on + strand, within ECD_00461 at 507.484 kb on + strand, within ECD_00461
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnN remove 505,807 + +0.5 505,807 + -1.3 506,004 - ECD_00459 0.31 +0.2 506,129 + ECD_00459 0.45 -1.0 506,165 + ECD_00459 0.49 -0.7 506,166 - ECD_00459 0.49 +0.8 506,515 + ECD_00459 0.89 +1.2 507,079 + ECD_00461 0.21 -0.4 507,265 + ECD_00461 0.33 -0.1 507,351 + ECD_00461 0.39 -0.2 507,484 + ECD_00461 0.49 -0.3
Or see this region's nucleotide sequence