Experiment: Control_TnN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00268 and ECD_00269 are separated by 13 nucleotides ECD_00269 and ECD_00270 are separated by 128 nucleotides
ECD_00268: ECD_00268 - betaine aldehyde dehydrogenase, NAD-dependent, at 296,889 to 298,361
_00268
ECD_00269: ECD_00269 - choline-inducible betIBA-betT divergent operon transcriptional repressor, at 298,375 to 298,962
_00269
ECD_00270: ECD_00270 - choline transporter of high affinity, at 299,091 to 301,124
_00270
Position (kb) 298
299 Strain fitness (log2 ratio) -1
0
1 at 297.392 kb on + strand, within ECD_00268 at 297.392 kb on + strand, within ECD_00268 at 297.393 kb on - strand, within ECD_00268 at 297.503 kb on + strand, within ECD_00268 at 297.503 kb on + strand, within ECD_00268 at 297.644 kb on + strand, within ECD_00268 at 297.645 kb on - strand, within ECD_00268 at 297.645 kb on - strand, within ECD_00268 at 297.759 kb on + strand, within ECD_00268 at 297.760 kb on - strand, within ECD_00268 at 297.901 kb on + strand, within ECD_00268 at 297.952 kb on + strand, within ECD_00268 at 298.016 kb on - strand, within ECD_00268 at 298.016 kb on - strand, within ECD_00268 at 298.018 kb on + strand, within ECD_00268 at 298.070 kb on - strand, within ECD_00268 at 298.130 kb on + strand, within ECD_00268 at 298.330 kb on - strand at 298.330 kb on - strand at 298.330 kb on - strand at 298.330 kb on - strand at 298.330 kb on - strand at 298.330 kb on - strand at 298.331 kb on + strand at 298.332 kb on - strand at 298.333 kb on + strand at 298.615 kb on - strand, within ECD_00269 at 298.736 kb on - strand, within ECD_00269 at 298.818 kb on - strand, within ECD_00269 at 298.898 kb on - strand, within ECD_00269 at 299.259 kb on + strand at 299.262 kb on + strand at 299.263 kb on - strand at 299.283 kb on + strand at 299.283 kb on + strand at 299.285 kb on + strand at 299.451 kb on + strand, within ECD_00270 at 299.451 kb on + strand, within ECD_00270 at 299.451 kb on + strand, within ECD_00270 at 299.452 kb on - strand, within ECD_00270 at 299.453 kb on + strand, within ECD_00270 at 299.453 kb on + strand, within ECD_00270 at 299.454 kb on - strand, within ECD_00270 at 299.551 kb on - strand, within ECD_00270 at 299.592 kb on + strand, within ECD_00270 at 299.697 kb on - strand, within ECD_00270 at 299.742 kb on - strand, within ECD_00270 at 299.742 kb on - strand, within ECD_00270 at 299.745 kb on + strand, within ECD_00270 at 299.745 kb on + strand, within ECD_00270 at 299.746 kb on - strand, within ECD_00270 at 299.746 kb on - strand, within ECD_00270 at 299.758 kb on + strand, within ECD_00270 at 299.828 kb on + strand, within ECD_00270 at 299.879 kb on + strand, within ECD_00270 at 299.945 kb on + strand, within ECD_00270 at 299.946 kb on - strand, within ECD_00270
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnN remove 297,392 + ECD_00268 0.34 +0.3 297,392 + ECD_00268 0.34 -1.1 297,393 - ECD_00268 0.34 -0.1 297,503 + ECD_00268 0.42 +0.5 297,503 + ECD_00268 0.42 -0.1 297,644 + ECD_00268 0.51 -0.5 297,645 - ECD_00268 0.51 +0.8 297,645 - ECD_00268 0.51 +0.1 297,759 + ECD_00268 0.59 +0.7 297,760 - ECD_00268 0.59 -0.5 297,901 + ECD_00268 0.69 +0.6 297,952 + ECD_00268 0.72 -1.3 298,016 - ECD_00268 0.77 -0.2 298,016 - ECD_00268 0.77 -0.8 298,018 + ECD_00268 0.77 -0.0 298,070 - ECD_00268 0.80 -1.0 298,130 + ECD_00268 0.84 +0.4 298,330 - -0.5 298,330 - +1.1 298,330 - +0.6 298,330 - +0.4 298,330 - +0.4 298,330 - +0.1 298,331 + +0.7 298,332 - -0.2 298,333 + -1.6 298,615 - ECD_00269 0.41 -1.5 298,736 - ECD_00269 0.61 -1.0 298,818 - ECD_00269 0.75 -0.2 298,898 - ECD_00269 0.89 -0.4 299,259 + -0.3 299,262 + +0.6 299,263 - +0.1 299,283 + +0.3 299,283 + +0.1 299,285 + -0.9 299,451 + ECD_00270 0.18 +0.4 299,451 + ECD_00270 0.18 +0.6 299,451 + ECD_00270 0.18 -0.3 299,452 - ECD_00270 0.18 -0.1 299,453 + ECD_00270 0.18 -1.3 299,453 + ECD_00270 0.18 +0.7 299,454 - ECD_00270 0.18 +0.4 299,551 - ECD_00270 0.23 +0.2 299,592 + ECD_00270 0.25 -0.6 299,697 - ECD_00270 0.30 +0.1 299,742 - ECD_00270 0.32 +0.6 299,742 - ECD_00270 0.32 -1.2 299,745 + ECD_00270 0.32 +0.7 299,745 + ECD_00270 0.32 +0.5 299,746 - ECD_00270 0.32 +0.8 299,746 - ECD_00270 0.32 +0.4 299,758 + ECD_00270 0.33 -0.4 299,828 + ECD_00270 0.36 -0.6 299,879 + ECD_00270 0.39 -0.3 299,945 + ECD_00270 0.42 +0.3 299,946 - ECD_00270 0.42 +0.3
Or see this region's nucleotide sequence