Strain Fitness in Escherichia coli BL21 around ECD_00209

Experiment: Control_TnN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00208 and ECD_t00004 are separated by 132 nucleotidesECD_t00004 and ECD_00209 are separated by 329 nucleotidesECD_00209 and ECD_00210 are separated by 265 nucleotidesECD_00210 and ECD_00211 overlap by 82 nucleotidesECD_00211 and ECD_00212 are separated by 1 nucleotides ECD_00208: ECD_00208 - DNA polymerase III epsilon subunit, at 238,994 to 239,725 _00208 ECD_t00004: ECD_t00004 - tRNA-Asp, at 239,858 to 239,934 _t00004 ECD_00209: ECD_00209 - lipoprotein, at 240,264 to 241,049 _00209 ECD_00210: ECD_00210 - IS1 protein InsA, at 241,315 to 241,590 _00210 ECD_00211: ECD_00211 - IS1 protein InsB, at 241,509 to 242,012 _00211 ECD_00212: ECD_00212 - hypothetical protein, at 242,014 to 242,385 _00212 Position (kb) 240 241 242Strain fitness (log2 ratio) -2 -1 0 1at 239.724 kb on - strandat 239.728 kb on - strandat 239.728 kb on - strandat 240.515 kb on - strand, within ECD_00209at 240.833 kb on + strand, within ECD_00209at 240.920 kb on + strand, within ECD_00209

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_TnN
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239,724 - -0.1
239,728 - -0.1
239,728 - +0.5
240,515 - ECD_00209 0.32 -0.1
240,833 + ECD_00209 0.72 -1.9
240,920 + ECD_00209 0.83 -1.1

Or see this region's nucleotide sequence