Experiment: Control_TnN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03991 and ECD_03992 are separated by 138 nucleotides ECD_03992 and ECD_03993 are separated by 122 nucleotides ECD_03993 and ECD_03994 are separated by 77 nucleotides
ECD_03991: ECD_03991 - melibiose:sodium symporter, at 4,250,460 to 4,251,869
_03991
ECD_03992: ECD_03992 - DUF2238 family inner membrane protein, at 4,252,008 to 4,252,637
_03992
ECD_03993: ECD_03993 - anaerobic class I fumarate hydratase (fumarase B), at 4,252,760 to 4,254,406
_03993
ECD_03994: ECD_03994 - C4-dicarboxylate transporter, anaerobic; DcuS co-sensor, at 4,254,484 to 4,255,824
_03994
Position (kb)
4252
4253
4254
4255 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4251.794 kb on + strand at 4251.880 kb on - strand at 4251.880 kb on - strand at 4251.880 kb on - strand at 4251.932 kb on - strand at 4251.932 kb on - strand at 4252.065 kb on + strand at 4252.104 kb on - strand, within ECD_03992 at 4252.192 kb on - strand, within ECD_03992 at 4252.198 kb on + strand, within ECD_03992 at 4252.250 kb on + strand, within ECD_03992 at 4252.250 kb on + strand, within ECD_03992 at 4252.250 kb on + strand, within ECD_03992 at 4252.264 kb on + strand, within ECD_03992 at 4252.265 kb on - strand, within ECD_03992 at 4252.399 kb on + strand, within ECD_03992 at 4252.405 kb on + strand, within ECD_03992 at 4252.406 kb on - strand, within ECD_03992 at 4252.406 kb on - strand, within ECD_03992 at 4252.452 kb on - strand, within ECD_03992 at 4252.453 kb on + strand, within ECD_03992 at 4252.453 kb on + strand, within ECD_03992 at 4252.454 kb on - strand, within ECD_03992 at 4252.454 kb on - strand, within ECD_03992 at 4252.511 kb on + strand, within ECD_03992 at 4252.512 kb on - strand, within ECD_03992 at 4252.512 kb on - strand, within ECD_03992 at 4252.571 kb on - strand, within ECD_03992 at 4252.670 kb on - strand at 4252.670 kb on - strand at 4252.670 kb on - strand at 4252.761 kb on + strand at 4252.761 kb on + strand at 4252.762 kb on - strand at 4252.762 kb on - strand at 4252.765 kb on + strand at 4252.765 kb on + strand at 4252.765 kb on + strand at 4252.766 kb on - strand at 4252.813 kb on + strand at 4252.853 kb on + strand at 4252.854 kb on - strand at 4252.870 kb on + strand at 4252.958 kb on - strand, within ECD_03993 at 4252.965 kb on + strand, within ECD_03993 at 4252.965 kb on + strand, within ECD_03993 at 4252.981 kb on + strand, within ECD_03993 at 4253.068 kb on - strand, within ECD_03993 at 4253.068 kb on - strand, within ECD_03993 at 4253.149 kb on - strand, within ECD_03993 at 4253.225 kb on - strand, within ECD_03993 at 4253.239 kb on + strand, within ECD_03993 at 4253.239 kb on + strand, within ECD_03993 at 4253.373 kb on + strand, within ECD_03993 at 4253.534 kb on - strand, within ECD_03993 at 4253.889 kb on - strand, within ECD_03993 at 4253.921 kb on - strand, within ECD_03993 at 4253.943 kb on + strand, within ECD_03993 at 4253.943 kb on + strand, within ECD_03993 at 4253.944 kb on - strand, within ECD_03993 at 4253.991 kb on + strand, within ECD_03993 at 4253.991 kb on + strand, within ECD_03993 at 4253.991 kb on + strand, within ECD_03993 at 4253.991 kb on + strand, within ECD_03993 at 4253.992 kb on - strand, within ECD_03993 at 4253.992 kb on - strand, within ECD_03993 at 4253.992 kb on - strand, within ECD_03993 at 4253.992 kb on - strand, within ECD_03993 at 4253.998 kb on + strand, within ECD_03993 at 4253.999 kb on - strand, within ECD_03993 at 4254.000 kb on + strand, within ECD_03993 at 4254.153 kb on + strand, within ECD_03993 at 4254.154 kb on - strand, within ECD_03993 at 4254.154 kb on - strand, within ECD_03993 at 4254.154 kb on - strand, within ECD_03993 at 4254.339 kb on - strand at 4254.339 kb on - strand at 4254.339 kb on - strand at 4254.339 kb on - strand at 4254.342 kb on + strand at 4254.343 kb on - strand at 4254.343 kb on - strand at 4254.385 kb on - strand at 4254.406 kb on + strand at 4254.407 kb on - strand at 4254.407 kb on - strand at 4254.428 kb on + strand at 4254.429 kb on - strand at 4254.485 kb on + strand at 4254.485 kb on + strand at 4254.486 kb on - strand at 4254.486 kb on - strand at 4254.486 kb on - strand at 4254.487 kb on + strand at 4254.487 kb on + strand at 4254.497 kb on + strand at 4254.497 kb on + strand at 4254.656 kb on + strand, within ECD_03994 at 4254.657 kb on - strand, within ECD_03994 at 4254.692 kb on + strand, within ECD_03994 at 4254.693 kb on - strand, within ECD_03994 at 4254.795 kb on - strand, within ECD_03994 at 4254.849 kb on + strand, within ECD_03994 at 4254.849 kb on + strand, within ECD_03994 at 4254.849 kb on + strand, within ECD_03994 at 4254.850 kb on - strand, within ECD_03994 at 4254.850 kb on - strand, within ECD_03994 at 4254.942 kb on + strand, within ECD_03994 at 4254.943 kb on - strand, within ECD_03994 at 4254.972 kb on + strand, within ECD_03994 at 4254.973 kb on - strand, within ECD_03994 at 4254.996 kb on + strand, within ECD_03994 at 4254.996 kb on + strand, within ECD_03994 at 4255.167 kb on - strand, within ECD_03994 at 4255.172 kb on + strand, within ECD_03994 at 4255.172 kb on + strand, within ECD_03994 at 4255.173 kb on - strand, within ECD_03994 at 4255.173 kb on - strand, within ECD_03994
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnN remove 4,251,794 + -2.2 4,251,880 - -0.9 4,251,880 - -2.1 4,251,880 - +1.1 4,251,932 - +0.1 4,251,932 - -0.9 4,252,065 + -0.9 4,252,104 - ECD_03992 0.15 +0.7 4,252,192 - ECD_03992 0.29 +0.1 4,252,198 + ECD_03992 0.30 +0.8 4,252,250 + ECD_03992 0.38 -1.3 4,252,250 + ECD_03992 0.38 -0.2 4,252,250 + ECD_03992 0.38 -0.3 4,252,264 + ECD_03992 0.41 -0.4 4,252,265 - ECD_03992 0.41 -1.6 4,252,399 + ECD_03992 0.62 +1.2 4,252,405 + ECD_03992 0.63 -0.1 4,252,406 - ECD_03992 0.63 -0.0 4,252,406 - ECD_03992 0.63 +0.5 4,252,452 - ECD_03992 0.70 +0.0 4,252,453 + ECD_03992 0.71 -0.1 4,252,453 + ECD_03992 0.71 -0.7 4,252,454 - ECD_03992 0.71 -0.5 4,252,454 - ECD_03992 0.71 -0.4 4,252,511 + ECD_03992 0.80 +0.1 4,252,512 - ECD_03992 0.80 +0.5 4,252,512 - ECD_03992 0.80 +0.3 4,252,571 - ECD_03992 0.89 -0.8 4,252,670 - -0.2 4,252,670 - -0.0 4,252,670 - -0.3 4,252,761 + +0.8 4,252,761 + +0.6 4,252,762 - -0.4 4,252,762 - -1.3 4,252,765 + -0.6 4,252,765 + -0.6 4,252,765 + -0.8 4,252,766 - -0.4 4,252,813 + -0.2 4,252,853 + +0.6 4,252,854 - -0.3 4,252,870 + -2.8 4,252,958 - ECD_03993 0.12 -0.1 4,252,965 + ECD_03993 0.12 +0.1 4,252,965 + ECD_03993 0.12 +0.6 4,252,981 + ECD_03993 0.13 +0.3 4,253,068 - ECD_03993 0.19 +0.3 4,253,068 - ECD_03993 0.19 -0.1 4,253,149 - ECD_03993 0.24 +0.1 4,253,225 - ECD_03993 0.28 +1.0 4,253,239 + ECD_03993 0.29 -0.7 4,253,239 + ECD_03993 0.29 +0.7 4,253,373 + ECD_03993 0.37 +0.3 4,253,534 - ECD_03993 0.47 +0.1 4,253,889 - ECD_03993 0.69 +0.0 4,253,921 - ECD_03993 0.70 +0.5 4,253,943 + ECD_03993 0.72 -0.0 4,253,943 + ECD_03993 0.72 -1.6 4,253,944 - ECD_03993 0.72 +0.8 4,253,991 + ECD_03993 0.75 +0.8 4,253,991 + ECD_03993 0.75 -0.0 4,253,991 + ECD_03993 0.75 +0.2 4,253,991 + ECD_03993 0.75 -0.6 4,253,992 - ECD_03993 0.75 -0.4 4,253,992 - ECD_03993 0.75 -0.6 4,253,992 - ECD_03993 0.75 -0.1 4,253,992 - ECD_03993 0.75 +0.6 4,253,998 + ECD_03993 0.75 +0.3 4,253,999 - ECD_03993 0.75 -0.9 4,254,000 + ECD_03993 0.75 +0.9 4,254,153 + ECD_03993 0.85 +1.2 4,254,154 - ECD_03993 0.85 +0.4 4,254,154 - ECD_03993 0.85 +0.9 4,254,154 - ECD_03993 0.85 -0.9 4,254,339 - -0.4 4,254,339 - +0.2 4,254,339 - -0.1 4,254,339 - -0.4 4,254,342 + +0.1 4,254,343 - -0.0 4,254,343 - +0.5 4,254,385 - -0.1 4,254,406 + +0.4 4,254,407 - +0.1 4,254,407 - -0.1 4,254,428 + +0.2 4,254,429 - +0.4 4,254,485 + +0.6 4,254,485 + +1.1 4,254,486 - +0.3 4,254,486 - -2.3 4,254,486 - +1.0 4,254,487 + -0.5 4,254,487 + +0.0 4,254,497 + -0.5 4,254,497 + +0.3 4,254,656 + ECD_03994 0.13 +0.1 4,254,657 - ECD_03994 0.13 -0.4 4,254,692 + ECD_03994 0.16 -0.2 4,254,693 - ECD_03994 0.16 +0.3 4,254,795 - ECD_03994 0.23 +0.2 4,254,849 + ECD_03994 0.27 -0.3 4,254,849 + ECD_03994 0.27 +1.0 4,254,849 + ECD_03994 0.27 +0.5 4,254,850 - ECD_03994 0.27 -0.9 4,254,850 - ECD_03994 0.27 -0.4 4,254,942 + ECD_03994 0.34 -0.2 4,254,943 - ECD_03994 0.34 -0.1 4,254,972 + ECD_03994 0.36 +0.8 4,254,973 - ECD_03994 0.36 -0.3 4,254,996 + ECD_03994 0.38 +0.4 4,254,996 + ECD_03994 0.38 -0.3 4,255,167 - ECD_03994 0.51 +0.1 4,255,172 + ECD_03994 0.51 +0.2 4,255,172 + ECD_03994 0.51 -0.0 4,255,173 - ECD_03994 0.51 -0.0 4,255,173 - ECD_03994 0.51 +0.3
Or see this region's nucleotide sequence