Strain Fitness in Escherichia coli BL21 around ECD_03993

Experiment: Control_TnN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03991 and ECD_03992 are separated by 138 nucleotidesECD_03992 and ECD_03993 are separated by 122 nucleotidesECD_03993 and ECD_03994 are separated by 77 nucleotides ECD_03991: ECD_03991 - melibiose:sodium symporter, at 4,250,460 to 4,251,869 _03991 ECD_03992: ECD_03992 - DUF2238 family inner membrane protein, at 4,252,008 to 4,252,637 _03992 ECD_03993: ECD_03993 - anaerobic class I fumarate hydratase (fumarase B), at 4,252,760 to 4,254,406 _03993 ECD_03994: ECD_03994 - C4-dicarboxylate transporter, anaerobic; DcuS co-sensor, at 4,254,484 to 4,255,824 _03994 Position (kb) 4252 4253 4254 4255Strain fitness (log2 ratio) -3 -2 -1 0 1at 4251.794 kb on + strandat 4251.880 kb on - strandat 4251.880 kb on - strandat 4251.880 kb on - strandat 4251.932 kb on - strandat 4251.932 kb on - strandat 4252.065 kb on + strandat 4252.104 kb on - strand, within ECD_03992at 4252.192 kb on - strand, within ECD_03992at 4252.198 kb on + strand, within ECD_03992at 4252.250 kb on + strand, within ECD_03992at 4252.250 kb on + strand, within ECD_03992at 4252.250 kb on + strand, within ECD_03992at 4252.264 kb on + strand, within ECD_03992at 4252.265 kb on - strand, within ECD_03992at 4252.399 kb on + strand, within ECD_03992at 4252.405 kb on + strand, within ECD_03992at 4252.406 kb on - strand, within ECD_03992at 4252.406 kb on - strand, within ECD_03992at 4252.452 kb on - strand, within ECD_03992at 4252.453 kb on + strand, within ECD_03992at 4252.453 kb on + strand, within ECD_03992at 4252.454 kb on - strand, within ECD_03992at 4252.454 kb on - strand, within ECD_03992at 4252.511 kb on + strand, within ECD_03992at 4252.512 kb on - strand, within ECD_03992at 4252.512 kb on - strand, within ECD_03992at 4252.571 kb on - strand, within ECD_03992at 4252.670 kb on - strandat 4252.670 kb on - strandat 4252.670 kb on - strandat 4252.761 kb on + strandat 4252.761 kb on + strandat 4252.762 kb on - strandat 4252.762 kb on - strandat 4252.765 kb on + strandat 4252.765 kb on + strandat 4252.765 kb on + strandat 4252.766 kb on - strandat 4252.813 kb on + strandat 4252.853 kb on + strandat 4252.854 kb on - strandat 4252.870 kb on + strandat 4252.958 kb on - strand, within ECD_03993at 4252.965 kb on + strand, within ECD_03993at 4252.965 kb on + strand, within ECD_03993at 4252.981 kb on + strand, within ECD_03993at 4253.068 kb on - strand, within ECD_03993at 4253.068 kb on - strand, within ECD_03993at 4253.149 kb on - strand, within ECD_03993at 4253.225 kb on - strand, within ECD_03993at 4253.239 kb on + strand, within ECD_03993at 4253.239 kb on + strand, within ECD_03993at 4253.373 kb on + strand, within ECD_03993at 4253.534 kb on - strand, within ECD_03993at 4253.889 kb on - strand, within ECD_03993at 4253.921 kb on - strand, within ECD_03993at 4253.943 kb on + strand, within ECD_03993at 4253.943 kb on + strand, within ECD_03993at 4253.944 kb on - strand, within ECD_03993at 4253.991 kb on + strand, within ECD_03993at 4253.991 kb on + strand, within ECD_03993at 4253.991 kb on + strand, within ECD_03993at 4253.991 kb on + strand, within ECD_03993at 4253.992 kb on - strand, within ECD_03993at 4253.992 kb on - strand, within ECD_03993at 4253.992 kb on - strand, within ECD_03993at 4253.992 kb on - strand, within ECD_03993at 4253.998 kb on + strand, within ECD_03993at 4253.999 kb on - strand, within ECD_03993at 4254.000 kb on + strand, within ECD_03993at 4254.153 kb on + strand, within ECD_03993at 4254.154 kb on - strand, within ECD_03993at 4254.154 kb on - strand, within ECD_03993at 4254.154 kb on - strand, within ECD_03993at 4254.339 kb on - strandat 4254.339 kb on - strandat 4254.339 kb on - strandat 4254.339 kb on - strandat 4254.342 kb on + strandat 4254.343 kb on - strandat 4254.343 kb on - strandat 4254.385 kb on - strandat 4254.406 kb on + strandat 4254.407 kb on - strandat 4254.407 kb on - strandat 4254.428 kb on + strandat 4254.429 kb on - strandat 4254.485 kb on + strandat 4254.485 kb on + strandat 4254.486 kb on - strandat 4254.486 kb on - strandat 4254.486 kb on - strandat 4254.487 kb on + strandat 4254.487 kb on + strandat 4254.497 kb on + strandat 4254.497 kb on + strandat 4254.656 kb on + strand, within ECD_03994at 4254.657 kb on - strand, within ECD_03994at 4254.692 kb on + strand, within ECD_03994at 4254.693 kb on - strand, within ECD_03994at 4254.795 kb on - strand, within ECD_03994at 4254.849 kb on + strand, within ECD_03994at 4254.849 kb on + strand, within ECD_03994at 4254.849 kb on + strand, within ECD_03994at 4254.850 kb on - strand, within ECD_03994at 4254.850 kb on - strand, within ECD_03994at 4254.942 kb on + strand, within ECD_03994at 4254.943 kb on - strand, within ECD_03994at 4254.972 kb on + strand, within ECD_03994at 4254.973 kb on - strand, within ECD_03994at 4254.996 kb on + strand, within ECD_03994at 4254.996 kb on + strand, within ECD_03994at 4255.167 kb on - strand, within ECD_03994at 4255.172 kb on + strand, within ECD_03994at 4255.172 kb on + strand, within ECD_03994at 4255.173 kb on - strand, within ECD_03994at 4255.173 kb on - strand, within ECD_03994

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_TnN
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4,251,794 + -2.2
4,251,880 - -0.9
4,251,880 - -2.1
4,251,880 - +1.1
4,251,932 - +0.1
4,251,932 - -0.9
4,252,065 + -0.9
4,252,104 - ECD_03992 0.15 +0.7
4,252,192 - ECD_03992 0.29 +0.1
4,252,198 + ECD_03992 0.30 +0.8
4,252,250 + ECD_03992 0.38 -1.3
4,252,250 + ECD_03992 0.38 -0.2
4,252,250 + ECD_03992 0.38 -0.3
4,252,264 + ECD_03992 0.41 -0.4
4,252,265 - ECD_03992 0.41 -1.6
4,252,399 + ECD_03992 0.62 +1.2
4,252,405 + ECD_03992 0.63 -0.1
4,252,406 - ECD_03992 0.63 -0.0
4,252,406 - ECD_03992 0.63 +0.5
4,252,452 - ECD_03992 0.70 +0.0
4,252,453 + ECD_03992 0.71 -0.1
4,252,453 + ECD_03992 0.71 -0.7
4,252,454 - ECD_03992 0.71 -0.5
4,252,454 - ECD_03992 0.71 -0.4
4,252,511 + ECD_03992 0.80 +0.1
4,252,512 - ECD_03992 0.80 +0.5
4,252,512 - ECD_03992 0.80 +0.3
4,252,571 - ECD_03992 0.89 -0.8
4,252,670 - -0.2
4,252,670 - -0.0
4,252,670 - -0.3
4,252,761 + +0.8
4,252,761 + +0.6
4,252,762 - -0.4
4,252,762 - -1.3
4,252,765 + -0.6
4,252,765 + -0.6
4,252,765 + -0.8
4,252,766 - -0.4
4,252,813 + -0.2
4,252,853 + +0.6
4,252,854 - -0.3
4,252,870 + -2.8
4,252,958 - ECD_03993 0.12 -0.1
4,252,965 + ECD_03993 0.12 +0.1
4,252,965 + ECD_03993 0.12 +0.6
4,252,981 + ECD_03993 0.13 +0.3
4,253,068 - ECD_03993 0.19 +0.3
4,253,068 - ECD_03993 0.19 -0.1
4,253,149 - ECD_03993 0.24 +0.1
4,253,225 - ECD_03993 0.28 +1.0
4,253,239 + ECD_03993 0.29 -0.7
4,253,239 + ECD_03993 0.29 +0.7
4,253,373 + ECD_03993 0.37 +0.3
4,253,534 - ECD_03993 0.47 +0.1
4,253,889 - ECD_03993 0.69 +0.0
4,253,921 - ECD_03993 0.70 +0.5
4,253,943 + ECD_03993 0.72 -0.0
4,253,943 + ECD_03993 0.72 -1.6
4,253,944 - ECD_03993 0.72 +0.8
4,253,991 + ECD_03993 0.75 +0.8
4,253,991 + ECD_03993 0.75 -0.0
4,253,991 + ECD_03993 0.75 +0.2
4,253,991 + ECD_03993 0.75 -0.6
4,253,992 - ECD_03993 0.75 -0.4
4,253,992 - ECD_03993 0.75 -0.6
4,253,992 - ECD_03993 0.75 -0.1
4,253,992 - ECD_03993 0.75 +0.6
4,253,998 + ECD_03993 0.75 +0.3
4,253,999 - ECD_03993 0.75 -0.9
4,254,000 + ECD_03993 0.75 +0.9
4,254,153 + ECD_03993 0.85 +1.2
4,254,154 - ECD_03993 0.85 +0.4
4,254,154 - ECD_03993 0.85 +0.9
4,254,154 - ECD_03993 0.85 -0.9
4,254,339 - -0.4
4,254,339 - +0.2
4,254,339 - -0.1
4,254,339 - -0.4
4,254,342 + +0.1
4,254,343 - -0.0
4,254,343 - +0.5
4,254,385 - -0.1
4,254,406 + +0.4
4,254,407 - +0.1
4,254,407 - -0.1
4,254,428 + +0.2
4,254,429 - +0.4
4,254,485 + +0.6
4,254,485 + +1.1
4,254,486 - +0.3
4,254,486 - -2.3
4,254,486 - +1.0
4,254,487 + -0.5
4,254,487 + +0.0
4,254,497 + -0.5
4,254,497 + +0.3
4,254,656 + ECD_03994 0.13 +0.1
4,254,657 - ECD_03994 0.13 -0.4
4,254,692 + ECD_03994 0.16 -0.2
4,254,693 - ECD_03994 0.16 +0.3
4,254,795 - ECD_03994 0.23 +0.2
4,254,849 + ECD_03994 0.27 -0.3
4,254,849 + ECD_03994 0.27 +1.0
4,254,849 + ECD_03994 0.27 +0.5
4,254,850 - ECD_03994 0.27 -0.9
4,254,850 - ECD_03994 0.27 -0.4
4,254,942 + ECD_03994 0.34 -0.2
4,254,943 - ECD_03994 0.34 -0.1
4,254,972 + ECD_03994 0.36 +0.8
4,254,973 - ECD_03994 0.36 -0.3
4,254,996 + ECD_03994 0.38 +0.4
4,254,996 + ECD_03994 0.38 -0.3
4,255,167 - ECD_03994 0.51 +0.1
4,255,172 + ECD_03994 0.51 +0.2
4,255,172 + ECD_03994 0.51 -0.0
4,255,173 - ECD_03994 0.51 -0.0
4,255,173 - ECD_03994 0.51 +0.3

Or see this region's nucleotide sequence