Strain Fitness in Escherichia coli BL21 around ECD_03049

Experiment: Control_TnN

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_03048 and ECD_03049 are separated by 15 nucleotidesECD_03049 and ECD_03050 are separated by 126 nucleotidesECD_03050 and ECD_03051 are separated by 20 nucleotidesECD_03051 and ECD_03052 are separated by 258 nucleotides ECD_03048: ECD_03048 - GTPase involved in cell partioning and DNA repair, at 3,199,081 to 3,200,253 _03048 ECD_03049: ECD_03049 - EamA family inner membrane putative transporter, at 3,200,269 to 3,201,234 _03049 ECD_03050: ECD_03050 - 50S ribosomal subunit protein L27, at 3,201,361 to 3,201,618 _03050 ECD_03051: ECD_03051 - 50S ribosomal subunit protein L21, at 3,201,639 to 3,201,950 _03051 ECD_03052: ECD_03052 - octaprenyl diphosphate synthase, at 3,202,209 to 3,203,180 _03052 Position (kb) 3200 3201 3202Strain fitness (log2 ratio) -1 0 1at 3200.266 kb on - strandat 3200.305 kb on - strandat 3200.305 kb on - strandat 3200.305 kb on - strandat 3200.305 kb on - strandat 3200.305 kb on - strandat 3200.305 kb on - strandat 3200.305 kb on - strandat 3200.311 kb on - strandat 3200.315 kb on - strandat 3200.349 kb on - strandat 3200.385 kb on - strand, within ECD_03049at 3200.390 kb on - strand, within ECD_03049at 3200.390 kb on - strand, within ECD_03049at 3200.399 kb on - strand, within ECD_03049at 3200.543 kb on - strand, within ECD_03049at 3200.603 kb on - strand, within ECD_03049at 3200.715 kb on - strand, within ECD_03049at 3200.715 kb on - strand, within ECD_03049at 3200.846 kb on - strand, within ECD_03049at 3200.885 kb on - strand, within ECD_03049at 3200.885 kb on - strand, within ECD_03049at 3200.885 kb on - strand, within ECD_03049at 3200.952 kb on - strand, within ECD_03049at 3200.952 kb on - strand, within ECD_03049at 3201.047 kb on - strand, within ECD_03049at 3201.240 kb on - strandat 3201.306 kb on - strandat 3201.306 kb on - strandat 3201.306 kb on - strandat 3202.057 kb on - strandat 3202.066 kb on - strandat 3202.092 kb on - strandat 3202.123 kb on + strandat 3202.148 kb on + strandat 3202.175 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Control_TnN
remove
3,200,266 - -0.6
3,200,305 - -1.1
3,200,305 - -0.1
3,200,305 - +0.8
3,200,305 - -0.4
3,200,305 - -0.3
3,200,305 - +0.4
3,200,305 - +0.3
3,200,311 - -0.9
3,200,315 - +0.9
3,200,349 - -0.5
3,200,385 - ECD_03049 0.12 -0.0
3,200,390 - ECD_03049 0.13 +0.1
3,200,390 - ECD_03049 0.13 -0.1
3,200,399 - ECD_03049 0.13 +0.9
3,200,543 - ECD_03049 0.28 -0.4
3,200,603 - ECD_03049 0.35 +0.1
3,200,715 - ECD_03049 0.46 +0.4
3,200,715 - ECD_03049 0.46 +0.1
3,200,846 - ECD_03049 0.60 +1.1
3,200,885 - ECD_03049 0.64 +0.5
3,200,885 - ECD_03049 0.64 +0.1
3,200,885 - ECD_03049 0.64 -0.1
3,200,952 - ECD_03049 0.71 +0.6
3,200,952 - ECD_03049 0.71 +1.0
3,201,047 - ECD_03049 0.81 +0.1
3,201,240 - +1.6
3,201,306 - +0.8
3,201,306 - -0.1
3,201,306 - +0.9
3,202,057 - +0.1
3,202,066 - -0.5
3,202,092 - -0.5
3,202,123 + +0.1
3,202,148 + +0.5
3,202,175 + +0.2

Or see this region's nucleotide sequence