Experiment: Control_TnN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03048 and ECD_03049 are separated by 15 nucleotides ECD_03049 and ECD_03050 are separated by 126 nucleotides ECD_03050 and ECD_03051 are separated by 20 nucleotides ECD_03051 and ECD_03052 are separated by 258 nucleotides
ECD_03048: ECD_03048 - GTPase involved in cell partioning and DNA repair, at 3,199,081 to 3,200,253
_03048
ECD_03049: ECD_03049 - EamA family inner membrane putative transporter, at 3,200,269 to 3,201,234
_03049
ECD_03050: ECD_03050 - 50S ribosomal subunit protein L27, at 3,201,361 to 3,201,618
_03050
ECD_03051: ECD_03051 - 50S ribosomal subunit protein L21, at 3,201,639 to 3,201,950
_03051
ECD_03052: ECD_03052 - octaprenyl diphosphate synthase, at 3,202,209 to 3,203,180
_03052
Position (kb)
3200
3201
3202 Strain fitness (log2 ratio)
-1
0
1 at 3200.266 kb on - strand at 3200.305 kb on - strand at 3200.305 kb on - strand at 3200.305 kb on - strand at 3200.305 kb on - strand at 3200.305 kb on - strand at 3200.305 kb on - strand at 3200.305 kb on - strand at 3200.311 kb on - strand at 3200.315 kb on - strand at 3200.349 kb on - strand at 3200.385 kb on - strand, within ECD_03049 at 3200.390 kb on - strand, within ECD_03049 at 3200.390 kb on - strand, within ECD_03049 at 3200.399 kb on - strand, within ECD_03049 at 3200.543 kb on - strand, within ECD_03049 at 3200.603 kb on - strand, within ECD_03049 at 3200.715 kb on - strand, within ECD_03049 at 3200.715 kb on - strand, within ECD_03049 at 3200.846 kb on - strand, within ECD_03049 at 3200.885 kb on - strand, within ECD_03049 at 3200.885 kb on - strand, within ECD_03049 at 3200.885 kb on - strand, within ECD_03049 at 3200.952 kb on - strand, within ECD_03049 at 3200.952 kb on - strand, within ECD_03049 at 3201.047 kb on - strand, within ECD_03049 at 3201.240 kb on - strand at 3201.306 kb on - strand at 3201.306 kb on - strand at 3201.306 kb on - strand at 3202.057 kb on - strand at 3202.066 kb on - strand at 3202.092 kb on - strand at 3202.123 kb on + strand at 3202.148 kb on + strand at 3202.175 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnN remove 3,200,266 - -0.6 3,200,305 - -1.1 3,200,305 - -0.1 3,200,305 - +0.8 3,200,305 - -0.4 3,200,305 - -0.3 3,200,305 - +0.4 3,200,305 - +0.3 3,200,311 - -0.9 3,200,315 - +0.9 3,200,349 - -0.5 3,200,385 - ECD_03049 0.12 -0.0 3,200,390 - ECD_03049 0.13 +0.1 3,200,390 - ECD_03049 0.13 -0.1 3,200,399 - ECD_03049 0.13 +0.9 3,200,543 - ECD_03049 0.28 -0.4 3,200,603 - ECD_03049 0.35 +0.1 3,200,715 - ECD_03049 0.46 +0.4 3,200,715 - ECD_03049 0.46 +0.1 3,200,846 - ECD_03049 0.60 +1.1 3,200,885 - ECD_03049 0.64 +0.5 3,200,885 - ECD_03049 0.64 +0.1 3,200,885 - ECD_03049 0.64 -0.1 3,200,952 - ECD_03049 0.71 +0.6 3,200,952 - ECD_03049 0.71 +1.0 3,201,047 - ECD_03049 0.81 +0.1 3,201,240 - +1.6 3,201,306 - +0.8 3,201,306 - -0.1 3,201,306 - +0.9 3,202,057 - +0.1 3,202,066 - -0.5 3,202,092 - -0.5 3,202,123 + +0.1 3,202,148 + +0.5 3,202,175 + +0.2
Or see this region's nucleotide sequence