Strain Fitness in Escherichia coli BL21 around ECD_02795

Experiment: Control_TnN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02794 and ECD_02795 are separated by 48 nucleotidesECD_02795 and ECD_02796 are separated by 392 nucleotides ECD_02794: ECD_02794 - nucleoside transporter, at 2,936,482 to 2,937,738 _02794 ECD_02795: ECD_02795 - ornithine decarboxylase, constitutive, at 2,937,787 to 2,939,922 _02795 ECD_02796: ECD_02796 - DUF554 family putative inner membrane protein, at 2,940,315 to 2,941,022 _02796 Position (kb) 2937 2938 2939 2940Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2936.797 kb on + strand, within ECD_02794at 2936.797 kb on + strand, within ECD_02794at 2936.797 kb on + strand, within ECD_02794at 2936.797 kb on + strand, within ECD_02794at 2936.797 kb on + strand, within ECD_02794at 2936.797 kb on + strand, within ECD_02794at 2936.798 kb on - strand, within ECD_02794at 2936.798 kb on - strand, within ECD_02794at 2936.798 kb on - strand, within ECD_02794at 2936.798 kb on - strand, within ECD_02794at 2936.799 kb on + strand, within ECD_02794at 2936.799 kb on + strand, within ECD_02794at 2936.799 kb on + strand, within ECD_02794at 2936.799 kb on + strand, within ECD_02794at 2936.800 kb on - strand, within ECD_02794at 2936.800 kb on - strand, within ECD_02794at 2936.800 kb on - strand, within ECD_02794at 2936.800 kb on - strand, within ECD_02794at 2936.816 kb on + strand, within ECD_02794at 2936.833 kb on + strand, within ECD_02794at 2936.968 kb on + strand, within ECD_02794at 2936.968 kb on + strand, within ECD_02794at 2936.969 kb on - strand, within ECD_02794at 2936.970 kb on + strand, within ECD_02794at 2936.971 kb on - strand, within ECD_02794at 2937.109 kb on - strand, within ECD_02794at 2937.109 kb on - strand, within ECD_02794at 2937.178 kb on - strand, within ECD_02794at 2937.321 kb on + strand, within ECD_02794at 2937.321 kb on + strand, within ECD_02794at 2937.321 kb on + strand, within ECD_02794at 2937.322 kb on - strand, within ECD_02794at 2937.322 kb on - strand, within ECD_02794at 2937.330 kb on - strand, within ECD_02794at 2937.330 kb on - strand, within ECD_02794at 2937.330 kb on - strand, within ECD_02794at 2937.342 kb on + strand, within ECD_02794at 2937.407 kb on + strand, within ECD_02794at 2937.434 kb on - strand, within ECD_02794at 2937.595 kb on + strand, within ECD_02794at 2937.595 kb on + strand, within ECD_02794at 2937.596 kb on - strand, within ECD_02794at 2937.596 kb on - strand, within ECD_02794at 2937.629 kb on + strandat 2937.630 kb on - strandat 2937.649 kb on + strandat 2937.650 kb on - strandat 2937.692 kb on - strandat 2937.692 kb on - strandat 2937.693 kb on + strandat 2937.694 kb on - strandat 2937.694 kb on - strandat 2937.694 kb on - strandat 2937.694 kb on - strandat 2937.736 kb on + strandat 2937.737 kb on - strandat 2937.737 kb on - strandat 2937.737 kb on - strandat 2937.740 kb on + strandat 2937.740 kb on + strandat 2937.741 kb on - strandat 2937.741 kb on - strandat 2937.789 kb on - strandat 2937.789 kb on - strandat 2937.800 kb on + strandat 2937.801 kb on - strandat 2937.801 kb on - strandat 2937.801 kb on - strandat 2937.806 kb on + strandat 2937.806 kb on + strandat 2937.843 kb on - strandat 2937.843 kb on - strandat 2937.909 kb on - strandat 2938.044 kb on - strand, within ECD_02795at 2938.115 kb on - strand, within ECD_02795at 2938.139 kb on + strand, within ECD_02795at 2938.140 kb on - strand, within ECD_02795at 2938.140 kb on - strand, within ECD_02795at 2938.140 kb on - strand, within ECD_02795at 2938.140 kb on - strand, within ECD_02795at 2938.140 kb on - strand, within ECD_02795at 2938.199 kb on + strand, within ECD_02795at 2938.200 kb on - strand, within ECD_02795at 2938.200 kb on - strand, within ECD_02795at 2938.200 kb on - strand, within ECD_02795at 2938.206 kb on + strand, within ECD_02795at 2938.207 kb on - strand, within ECD_02795at 2938.208 kb on + strand, within ECD_02795at 2938.251 kb on + strand, within ECD_02795at 2938.251 kb on + strand, within ECD_02795at 2938.318 kb on + strand, within ECD_02795at 2938.319 kb on - strand, within ECD_02795at 2938.380 kb on - strand, within ECD_02795at 2938.417 kb on - strand, within ECD_02795at 2938.440 kb on + strand, within ECD_02795at 2938.440 kb on + strand, within ECD_02795at 2938.441 kb on - strand, within ECD_02795at 2938.482 kb on - strand, within ECD_02795at 2938.497 kb on - strand, within ECD_02795at 2938.574 kb on + strand, within ECD_02795at 2938.629 kb on + strand, within ECD_02795at 2938.630 kb on - strand, within ECD_02795at 2938.765 kb on - strand, within ECD_02795at 2938.789 kb on - strand, within ECD_02795at 2938.793 kb on - strand, within ECD_02795at 2938.837 kb on - strand, within ECD_02795at 2939.009 kb on + strand, within ECD_02795at 2939.009 kb on + strand, within ECD_02795at 2939.009 kb on + strand, within ECD_02795at 2939.009 kb on + strand, within ECD_02795at 2939.009 kb on + strand, within ECD_02795at 2939.010 kb on - strand, within ECD_02795at 2939.010 kb on - strand, within ECD_02795at 2939.054 kb on + strand, within ECD_02795at 2939.054 kb on + strand, within ECD_02795at 2939.055 kb on - strand, within ECD_02795at 2939.055 kb on - strand, within ECD_02795at 2939.069 kb on + strand, within ECD_02795at 2939.070 kb on - strand, within ECD_02795at 2939.166 kb on + strand, within ECD_02795at 2939.166 kb on + strand, within ECD_02795at 2939.274 kb on + strand, within ECD_02795at 2939.274 kb on + strand, within ECD_02795at 2939.274 kb on + strand, within ECD_02795at 2939.274 kb on + strand, within ECD_02795at 2939.275 kb on - strand, within ECD_02795at 2939.363 kb on - strand, within ECD_02795at 2939.370 kb on - strand, within ECD_02795at 2939.370 kb on - strand, within ECD_02795at 2939.370 kb on - strand, within ECD_02795at 2939.370 kb on - strand, within ECD_02795at 2939.370 kb on - strand, within ECD_02795at 2939.466 kb on + strand, within ECD_02795at 2939.467 kb on - strand, within ECD_02795at 2939.472 kb on + strand, within ECD_02795at 2939.473 kb on - strand, within ECD_02795at 2939.473 kb on - strand, within ECD_02795at 2939.536 kb on - strand, within ECD_02795at 2939.594 kb on + strand, within ECD_02795at 2939.714 kb on - strandat 2939.714 kb on - strandat 2939.770 kb on - strandat 2939.842 kb on - strandat 2939.842 kb on - strandat 2939.872 kb on - strandat 2939.908 kb on - strandat 2939.908 kb on - strandat 2939.948 kb on + strandat 2939.948 kb on + strandat 2939.948 kb on + strandat 2939.949 kb on - strandat 2939.949 kb on - strandat 2939.949 kb on - strandat 2939.949 kb on - strandat 2939.949 kb on - strandat 2939.988 kb on + strandat 2939.988 kb on + strandat 2940.031 kb on - strandat 2940.031 kb on - strandat 2940.053 kb on + strandat 2940.145 kb on + strandat 2940.145 kb on + strandat 2940.145 kb on + strandat 2940.146 kb on - strandat 2940.146 kb on - strandat 2940.146 kb on - strandat 2940.146 kb on - strandat 2940.176 kb on + strandat 2940.279 kb on + strandat 2940.295 kb on + strandat 2940.332 kb on + strandat 2940.333 kb on - strandat 2940.349 kb on + strandat 2940.349 kb on + strandat 2940.350 kb on - strandat 2940.402 kb on - strand, within ECD_02796at 2940.458 kb on - strand, within ECD_02796at 2940.497 kb on - strand, within ECD_02796at 2940.596 kb on + strand, within ECD_02796at 2940.596 kb on + strand, within ECD_02796at 2940.596 kb on + strand, within ECD_02796at 2940.597 kb on - strand, within ECD_02796at 2940.597 kb on - strand, within ECD_02796at 2940.597 kb on - strand, within ECD_02796at 2940.620 kb on + strand, within ECD_02796at 2940.630 kb on + strand, within ECD_02796at 2940.630 kb on + strand, within ECD_02796at 2940.630 kb on + strand, within ECD_02796at 2940.631 kb on - strand, within ECD_02796at 2940.641 kb on + strand, within ECD_02796at 2940.642 kb on - strand, within ECD_02796at 2940.714 kb on - strand, within ECD_02796at 2940.805 kb on + strand, within ECD_02796at 2940.847 kb on + strand, within ECD_02796at 2940.850 kb on + strand, within ECD_02796at 2940.922 kb on + strand, within ECD_02796

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_TnN
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2,936,797 + ECD_02794 0.25 -0.9
2,936,797 + ECD_02794 0.25 +0.2
2,936,797 + ECD_02794 0.25 +0.3
2,936,797 + ECD_02794 0.25 +0.2
2,936,797 + ECD_02794 0.25 -0.5
2,936,797 + ECD_02794 0.25 +0.0
2,936,798 - ECD_02794 0.25 -0.5
2,936,798 - ECD_02794 0.25 -0.9
2,936,798 - ECD_02794 0.25 -0.0
2,936,798 - ECD_02794 0.25 -0.3
2,936,799 + ECD_02794 0.25 +1.3
2,936,799 + ECD_02794 0.25 +0.5
2,936,799 + ECD_02794 0.25 +0.5
2,936,799 + ECD_02794 0.25 -0.3
2,936,800 - ECD_02794 0.25 +1.2
2,936,800 - ECD_02794 0.25 +0.0
2,936,800 - ECD_02794 0.25 -1.0
2,936,800 - ECD_02794 0.25 -0.1
2,936,816 + ECD_02794 0.27 +0.1
2,936,833 + ECD_02794 0.28 +0.6
2,936,968 + ECD_02794 0.39 -0.3
2,936,968 + ECD_02794 0.39 +0.1
2,936,969 - ECD_02794 0.39 -0.5
2,936,970 + ECD_02794 0.39 -0.3
2,936,971 - ECD_02794 0.39 -0.4
2,937,109 - ECD_02794 0.50 +0.5
2,937,109 - ECD_02794 0.50 -0.0
2,937,178 - ECD_02794 0.55 -0.2
2,937,321 + ECD_02794 0.67 -2.7
2,937,321 + ECD_02794 0.67 -0.0
2,937,321 + ECD_02794 0.67 -0.6
2,937,322 - ECD_02794 0.67 -0.3
2,937,322 - ECD_02794 0.67 +0.4
2,937,330 - ECD_02794 0.67 +0.4
2,937,330 - ECD_02794 0.67 +0.1
2,937,330 - ECD_02794 0.67 +0.8
2,937,342 + ECD_02794 0.68 +2.0
2,937,407 + ECD_02794 0.74 -1.3
2,937,434 - ECD_02794 0.76 +0.3
2,937,595 + ECD_02794 0.89 -0.2
2,937,595 + ECD_02794 0.89 +0.6
2,937,596 - ECD_02794 0.89 +0.9
2,937,596 - ECD_02794 0.89 -1.3
2,937,629 + +0.7
2,937,630 - -0.3
2,937,649 + +0.9
2,937,650 - +0.2
2,937,692 - -0.3
2,937,692 - +0.3
2,937,693 + -0.2
2,937,694 - -0.1
2,937,694 - -0.5
2,937,694 - +0.5
2,937,694 - +0.4
2,937,736 + +0.5
2,937,737 - -0.6
2,937,737 - +0.3
2,937,737 - -0.4
2,937,740 + +0.1
2,937,740 + -0.0
2,937,741 - -0.5
2,937,741 - +0.7
2,937,789 - +0.2
2,937,789 - +0.1
2,937,800 + -0.9
2,937,801 - -1.6
2,937,801 - -0.0
2,937,801 - +1.3
2,937,806 + -0.0
2,937,806 + +0.2
2,937,843 - -0.5
2,937,843 - +0.5
2,937,909 - +0.2
2,938,044 - ECD_02795 0.12 -0.1
2,938,115 - ECD_02795 0.15 +0.2
2,938,139 + ECD_02795 0.16 +0.0
2,938,140 - ECD_02795 0.17 +0.7
2,938,140 - ECD_02795 0.17 +1.1
2,938,140 - ECD_02795 0.17 +0.1
2,938,140 - ECD_02795 0.17 +0.1
2,938,140 - ECD_02795 0.17 +0.9
2,938,199 + ECD_02795 0.19 +0.1
2,938,200 - ECD_02795 0.19 +1.0
2,938,200 - ECD_02795 0.19 +0.0
2,938,200 - ECD_02795 0.19 -0.0
2,938,206 + ECD_02795 0.20 -0.0
2,938,207 - ECD_02795 0.20 -0.1
2,938,208 + ECD_02795 0.20 +0.6
2,938,251 + ECD_02795 0.22 -0.2
2,938,251 + ECD_02795 0.22 +1.2
2,938,318 + ECD_02795 0.25 +0.9
2,938,319 - ECD_02795 0.25 +0.8
2,938,380 - ECD_02795 0.28 -1.4
2,938,417 - ECD_02795 0.29 +1.1
2,938,440 + ECD_02795 0.31 -0.0
2,938,440 + ECD_02795 0.31 +1.3
2,938,441 - ECD_02795 0.31 +0.5
2,938,482 - ECD_02795 0.33 +0.1
2,938,497 - ECD_02795 0.33 -0.8
2,938,574 + ECD_02795 0.37 +1.1
2,938,629 + ECD_02795 0.39 +0.6
2,938,630 - ECD_02795 0.39 -0.5
2,938,765 - ECD_02795 0.46 -0.0
2,938,789 - ECD_02795 0.47 -0.0
2,938,793 - ECD_02795 0.47 -0.3
2,938,837 - ECD_02795 0.49 +0.2
2,939,009 + ECD_02795 0.57 +0.7
2,939,009 + ECD_02795 0.57 -0.3
2,939,009 + ECD_02795 0.57 +1.6
2,939,009 + ECD_02795 0.57 +0.2
2,939,009 + ECD_02795 0.57 -0.2
2,939,010 - ECD_02795 0.57 +1.0
2,939,010 - ECD_02795 0.57 +0.5
2,939,054 + ECD_02795 0.59 +0.6
2,939,054 + ECD_02795 0.59 -0.2
2,939,055 - ECD_02795 0.59 +0.2
2,939,055 - ECD_02795 0.59 -0.2
2,939,069 + ECD_02795 0.60 -0.2
2,939,070 - ECD_02795 0.60 -0.3
2,939,166 + ECD_02795 0.65 +0.5
2,939,166 + ECD_02795 0.65 +2.3
2,939,274 + ECD_02795 0.70 -0.4
2,939,274 + ECD_02795 0.70 -0.1
2,939,274 + ECD_02795 0.70 +0.3
2,939,274 + ECD_02795 0.70 +0.8
2,939,275 - ECD_02795 0.70 +0.4
2,939,363 - ECD_02795 0.74 -0.3
2,939,370 - ECD_02795 0.74 +0.6
2,939,370 - ECD_02795 0.74 +0.8
2,939,370 - ECD_02795 0.74 +0.4
2,939,370 - ECD_02795 0.74 -3.0
2,939,370 - ECD_02795 0.74 +0.1
2,939,466 + ECD_02795 0.79 +1.6
2,939,467 - ECD_02795 0.79 +0.3
2,939,472 + ECD_02795 0.79 +1.8
2,939,473 - ECD_02795 0.79 +0.1
2,939,473 - ECD_02795 0.79 +0.1
2,939,536 - ECD_02795 0.82 +0.4
2,939,594 + ECD_02795 0.85 +0.2
2,939,714 - +1.3
2,939,714 - -0.8
2,939,770 - -1.2
2,939,842 - +0.2
2,939,842 - +1.5
2,939,872 - +0.3
2,939,908 - +0.3
2,939,908 - +0.3
2,939,948 + +0.5
2,939,948 + -0.1
2,939,948 + -0.2
2,939,949 - -0.1
2,939,949 - +0.1
2,939,949 - -0.2
2,939,949 - +0.4
2,939,949 - -0.6
2,939,988 + +0.4
2,939,988 + -0.2
2,940,031 - -0.4
2,940,031 - -0.3
2,940,053 + +1.0
2,940,145 + +0.5
2,940,145 + -0.5
2,940,145 + +0.0
2,940,146 - +0.3
2,940,146 - +0.0
2,940,146 - +0.4
2,940,146 - -0.8
2,940,176 + +0.1
2,940,279 + +0.1
2,940,295 + +0.3
2,940,332 + -0.7
2,940,333 - +0.5
2,940,349 + -0.4
2,940,349 + +0.0
2,940,350 - +0.5
2,940,402 - ECD_02796 0.12 +0.9
2,940,458 - ECD_02796 0.20 +0.0
2,940,497 - ECD_02796 0.26 +0.5
2,940,596 + ECD_02796 0.40 +0.1
2,940,596 + ECD_02796 0.40 -0.2
2,940,596 + ECD_02796 0.40 -0.2
2,940,597 - ECD_02796 0.40 +0.2
2,940,597 - ECD_02796 0.40 -0.9
2,940,597 - ECD_02796 0.40 -0.1
2,940,620 + ECD_02796 0.43 -0.4
2,940,630 + ECD_02796 0.44 +0.4
2,940,630 + ECD_02796 0.44 -0.5
2,940,630 + ECD_02796 0.44 +1.3
2,940,631 - ECD_02796 0.45 +0.4
2,940,641 + ECD_02796 0.46 -0.6
2,940,642 - ECD_02796 0.46 +1.1
2,940,714 - ECD_02796 0.56 -1.8
2,940,805 + ECD_02796 0.69 -0.1
2,940,847 + ECD_02796 0.75 +0.4
2,940,850 + ECD_02796 0.76 -1.0
2,940,922 + ECD_02796 0.86 +0.3

Or see this region's nucleotide sequence