Strain Fitness in Escherichia coli BL21 around ECD_02172

Experiment: Control_TnN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02170 and ECD_02171 are separated by 40 nucleotidesECD_02171 and ECD_02172 are separated by 17 nucleotidesECD_02172 and ECD_02173 are separated by 56 nucleotides ECD_02170: ECD_02170 - transposase_31 family protein, at 2,247,273 to 2,248,175 _02170 ECD_02171: ECD_02171 - 2-keto-3-deoxy-L-rhamnonate aldolase, at 2,248,216 to 2,249,019 _02171 ECD_02172: ECD_02172 - putative L-rhamnonate transporter, at 2,249,037 to 2,250,326 _02172 ECD_02173: ECD_02173 - L-rhamnonate dehydratase, at 2,250,383 to 2,251,588 _02173 Position (kb) 2249 2250 2251Strain fitness (log2 ratio) -1 0 1at 2248.058 kb on + strand, within ECD_02170at 2248.142 kb on - strandat 2248.221 kb on - strandat 2248.258 kb on - strandat 2248.771 kb on - strand, within ECD_02171at 2248.932 kb on - strand, within ECD_02171at 2248.932 kb on - strand, within ECD_02171at 2248.932 kb on - strand, within ECD_02171at 2249.009 kb on - strandat 2249.034 kb on + strandat 2249.034 kb on + strandat 2249.038 kb on + strandat 2249.039 kb on - strandat 2249.599 kb on - strand, within ECD_02172at 2249.599 kb on - strand, within ECD_02172at 2249.891 kb on - strand, within ECD_02172at 2249.891 kb on - strand, within ECD_02172at 2250.072 kb on - strand, within ECD_02172at 2250.138 kb on + strand, within ECD_02172at 2250.139 kb on - strand, within ECD_02172at 2250.343 kb on + strandat 2250.344 kb on - strandat 2250.394 kb on - strandat 2250.823 kb on - strand, within ECD_02173at 2250.864 kb on + strand, within ECD_02173at 2250.898 kb on - strand, within ECD_02173at 2251.225 kb on - strand, within ECD_02173at 2251.227 kb on + strand, within ECD_02173

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_TnN
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2,248,058 + ECD_02170 0.87 +0.4
2,248,142 - +0.0
2,248,221 - -0.5
2,248,258 - -0.0
2,248,771 - ECD_02171 0.69 -0.5
2,248,932 - ECD_02171 0.89 -1.0
2,248,932 - ECD_02171 0.89 -0.3
2,248,932 - ECD_02171 0.89 +0.3
2,249,009 - +0.0
2,249,034 + +0.7
2,249,034 + +0.3
2,249,038 + +1.4
2,249,039 - +0.4
2,249,599 - ECD_02172 0.44 +0.6
2,249,599 - ECD_02172 0.44 +0.7
2,249,891 - ECD_02172 0.66 +1.5
2,249,891 - ECD_02172 0.66 +0.4
2,250,072 - ECD_02172 0.80 +0.9
2,250,138 + ECD_02172 0.85 -0.3
2,250,139 - ECD_02172 0.85 +1.1
2,250,343 + -0.3
2,250,344 - -0.4
2,250,394 - +0.1
2,250,823 - ECD_02173 0.36 -0.1
2,250,864 + ECD_02173 0.40 +1.0
2,250,898 - ECD_02173 0.43 +0.2
2,251,225 - ECD_02173 0.70 -0.4
2,251,227 + ECD_02173 0.70 +1.0

Or see this region's nucleotide sequence