Strain Fitness in Escherichia coli BL21 around ECD_02154

Experiment: Control_TnN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02153 and ECD_02154 are separated by 0 nucleotidesECD_02154 and ECD_02155 overlap by 67 nucleotidesECD_02155 and ECD_02156 overlap by 4 nucleotides ECD_02153: ECD_02153 - tandem DUF2300 domain protein, putative host defense protein, at 2,218,509 to 2,220,158 _02153 ECD_02154: ECD_02154 - putative membrane protein, at 2,220,159 to 2,224,763 _02154 ECD_02155: ECD_02155 - DUF1175 family protein, putative host defense protein, at 2,224,697 to 2,225,320 _02155 ECD_02156: ECD_02156 - DUF2138 family protein, putative host defense protein, at 2,225,317 to 2,227,005 _02156 Position (kb) 2220 2221 2222 2223 2224 2225Strain fitness (log2 ratio) -2 -1 0 1 2at 2219.182 kb on + strand, within ECD_02153at 2219.235 kb on + strand, within ECD_02153at 2219.282 kb on + strand, within ECD_02153at 2219.307 kb on - strand, within ECD_02153at 2219.683 kb on - strand, within ECD_02153at 2219.801 kb on + strand, within ECD_02153at 2219.824 kb on + strand, within ECD_02153at 2219.888 kb on - strand, within ECD_02153at 2219.888 kb on - strand, within ECD_02153at 2220.009 kb on + strandat 2220.050 kb on - strandat 2220.087 kb on + strandat 2220.088 kb on - strandat 2220.160 kb on + strandat 2220.221 kb on - strandat 2220.326 kb on + strandat 2220.327 kb on - strandat 2220.328 kb on + strandat 2220.329 kb on - strandat 2220.518 kb on - strandat 2220.563 kb on + strandat 2220.599 kb on - strandat 2220.599 kb on - strandat 2220.688 kb on - strand, within ECD_02154at 2220.764 kb on + strand, within ECD_02154at 2220.823 kb on + strand, within ECD_02154at 2220.824 kb on - strand, within ECD_02154at 2220.824 kb on - strand, within ECD_02154at 2220.889 kb on - strand, within ECD_02154at 2220.923 kb on + strand, within ECD_02154at 2220.986 kb on - strand, within ECD_02154at 2221.248 kb on + strand, within ECD_02154at 2221.259 kb on + strand, within ECD_02154at 2221.290 kb on - strand, within ECD_02154at 2221.745 kb on + strand, within ECD_02154at 2221.789 kb on - strand, within ECD_02154at 2221.789 kb on - strand, within ECD_02154at 2222.012 kb on - strand, within ECD_02154at 2222.104 kb on + strand, within ECD_02154at 2222.105 kb on - strand, within ECD_02154at 2222.545 kb on + strand, within ECD_02154at 2222.545 kb on + strand, within ECD_02154at 2222.546 kb on - strand, within ECD_02154at 2222.546 kb on - strand, within ECD_02154at 2222.628 kb on + strand, within ECD_02154at 2222.698 kb on - strand, within ECD_02154at 2222.848 kb on - strand, within ECD_02154at 2222.878 kb on + strand, within ECD_02154at 2222.878 kb on + strand, within ECD_02154at 2222.878 kb on + strand, within ECD_02154at 2223.039 kb on - strand, within ECD_02154at 2223.063 kb on + strand, within ECD_02154at 2223.189 kb on + strand, within ECD_02154at 2223.190 kb on - strand, within ECD_02154at 2223.436 kb on + strand, within ECD_02154at 2223.436 kb on + strand, within ECD_02154at 2223.437 kb on - strand, within ECD_02154at 2223.437 kb on - strand, within ECD_02154at 2223.461 kb on + strand, within ECD_02154at 2223.462 kb on - strand, within ECD_02154at 2223.462 kb on - strand, within ECD_02154at 2223.462 kb on - strand, within ECD_02154at 2223.463 kb on + strand, within ECD_02154at 2223.464 kb on - strand, within ECD_02154at 2223.490 kb on - strand, within ECD_02154at 2223.496 kb on + strand, within ECD_02154at 2223.742 kb on + strand, within ECD_02154at 2223.829 kb on - strand, within ECD_02154at 2223.831 kb on - strand, within ECD_02154at 2223.831 kb on - strand, within ECD_02154at 2224.083 kb on - strand, within ECD_02154at 2224.084 kb on + strand, within ECD_02154at 2224.084 kb on + strand, within ECD_02154at 2224.084 kb on + strand, within ECD_02154at 2224.084 kb on + strand, within ECD_02154at 2224.085 kb on - strand, within ECD_02154at 2224.085 kb on - strand, within ECD_02154at 2224.236 kb on + strand, within ECD_02154at 2224.236 kb on + strand, within ECD_02154at 2224.253 kb on + strand, within ECD_02154at 2224.275 kb on + strand, within ECD_02154at 2224.382 kb on + strandat 2224.472 kb on + strandat 2224.845 kb on + strand, within ECD_02155at 2224.931 kb on + strand, within ECD_02155at 2224.960 kb on - strand, within ECD_02155at 2225.216 kb on + strand, within ECD_02155at 2225.432 kb on - strandat 2225.432 kb on - strandat 2225.529 kb on + strand, within ECD_02156at 2225.531 kb on + strand, within ECD_02156at 2225.532 kb on - strand, within ECD_02156at 2225.532 kb on - strand, within ECD_02156

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_TnN
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2,219,182 + ECD_02153 0.41 +0.9
2,219,235 + ECD_02153 0.44 +0.6
2,219,282 + ECD_02153 0.47 +0.4
2,219,307 - ECD_02153 0.48 -0.3
2,219,683 - ECD_02153 0.71 +1.3
2,219,801 + ECD_02153 0.78 -0.1
2,219,824 + ECD_02153 0.80 +0.6
2,219,888 - ECD_02153 0.84 +0.3
2,219,888 - ECD_02153 0.84 +0.1
2,220,009 + -0.1
2,220,050 - +0.2
2,220,087 + +0.3
2,220,088 - +0.2
2,220,160 + +0.2
2,220,221 - +0.7
2,220,326 + +0.5
2,220,327 - -0.8
2,220,328 + +0.4
2,220,329 - -0.3
2,220,518 - +0.9
2,220,563 + +0.1
2,220,599 - -0.7
2,220,599 - -0.6
2,220,688 - ECD_02154 0.11 +0.7
2,220,764 + ECD_02154 0.13 +0.8
2,220,823 + ECD_02154 0.14 -0.6
2,220,824 - ECD_02154 0.14 -0.3
2,220,824 - ECD_02154 0.14 -0.6
2,220,889 - ECD_02154 0.16 -0.5
2,220,923 + ECD_02154 0.17 +2.3
2,220,986 - ECD_02154 0.18 -0.6
2,221,248 + ECD_02154 0.24 -0.8
2,221,259 + ECD_02154 0.24 -1.2
2,221,290 - ECD_02154 0.25 +0.2
2,221,745 + ECD_02154 0.34 -0.2
2,221,789 - ECD_02154 0.35 -0.3
2,221,789 - ECD_02154 0.35 -1.2
2,222,012 - ECD_02154 0.40 -0.1
2,222,104 + ECD_02154 0.42 +0.5
2,222,105 - ECD_02154 0.42 -0.4
2,222,545 + ECD_02154 0.52 -0.0
2,222,545 + ECD_02154 0.52 -0.8
2,222,546 - ECD_02154 0.52 +0.1
2,222,546 - ECD_02154 0.52 -0.4
2,222,628 + ECD_02154 0.54 -0.8
2,222,698 - ECD_02154 0.55 -0.4
2,222,848 - ECD_02154 0.58 +0.4
2,222,878 + ECD_02154 0.59 +1.2
2,222,878 + ECD_02154 0.59 +0.6
2,222,878 + ECD_02154 0.59 -0.2
2,223,039 - ECD_02154 0.63 +0.5
2,223,063 + ECD_02154 0.63 -0.2
2,223,189 + ECD_02154 0.66 +0.4
2,223,190 - ECD_02154 0.66 -2.6
2,223,436 + ECD_02154 0.71 +0.5
2,223,436 + ECD_02154 0.71 -0.5
2,223,437 - ECD_02154 0.71 +0.1
2,223,437 - ECD_02154 0.71 +1.4
2,223,461 + ECD_02154 0.72 +0.4
2,223,462 - ECD_02154 0.72 -1.2
2,223,462 - ECD_02154 0.72 -0.8
2,223,462 - ECD_02154 0.72 -0.1
2,223,463 + ECD_02154 0.72 +0.2
2,223,464 - ECD_02154 0.72 +0.3
2,223,490 - ECD_02154 0.72 -0.8
2,223,496 + ECD_02154 0.72 -0.4
2,223,742 + ECD_02154 0.78 -0.5
2,223,829 - ECD_02154 0.80 +0.1
2,223,831 - ECD_02154 0.80 +0.5
2,223,831 - ECD_02154 0.80 +0.6
2,224,083 - ECD_02154 0.85 +0.2
2,224,084 + ECD_02154 0.85 +0.1
2,224,084 + ECD_02154 0.85 -0.0
2,224,084 + ECD_02154 0.85 +0.6
2,224,084 + ECD_02154 0.85 +0.3
2,224,085 - ECD_02154 0.85 +0.8
2,224,085 - ECD_02154 0.85 +0.6
2,224,236 + ECD_02154 0.89 -0.6
2,224,236 + ECD_02154 0.89 -0.3
2,224,253 + ECD_02154 0.89 +0.2
2,224,275 + ECD_02154 0.89 +0.2
2,224,382 + +0.2
2,224,472 + +0.3
2,224,845 + ECD_02155 0.24 +0.9
2,224,931 + ECD_02155 0.38 +1.2
2,224,960 - ECD_02155 0.42 +0.9
2,225,216 + ECD_02155 0.83 +1.8
2,225,432 - +0.2
2,225,432 - -0.3
2,225,529 + ECD_02156 0.13 -0.1
2,225,531 + ECD_02156 0.13 +0.2
2,225,532 - ECD_02156 0.13 -0.1
2,225,532 - ECD_02156 0.13 +0.4

Or see this region's nucleotide sequence