Experiment: Control_TnN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01300 and ECD_01301 are separated by 43 nucleotides ECD_01301 and ECD_01302 are separated by 118 nucleotides ECD_01302 and ECD_01303 overlap by 26 nucleotides
ECD_01300: ECD_01300 - aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase, at 1,373,087 to 1,374,628
_01300
ECD_01301: ECD_01301 - lipid hydroperoxide peroxidase, at 1,374,672 to 1,375,178
_01301
ECD_01302: ECD_01302 - L-Ala-D/L-Glu epimerase, at 1,375,297 to 1,376,262
_01302
ECD_01303: ECD_01303 - murein peptide amidase A, at 1,376,237 to 1,376,965
_01303
Position (kb) 1375
1376
1377 Strain fitness (log2 ratio) -1
0
1 at 1374.303 kb on + strand, within ECD_01300 at 1374.307 kb on + strand, within ECD_01300 at 1374.352 kb on + strand, within ECD_01300 at 1374.669 kb on - strand at 1374.827 kb on - strand, within ECD_01301 at 1374.933 kb on - strand, within ECD_01301 at 1375.334 kb on + strand at 1375.334 kb on + strand at 1375.334 kb on + strand at 1375.334 kb on + strand at 1375.413 kb on + strand, within ECD_01302 at 1375.414 kb on - strand, within ECD_01302 at 1375.983 kb on + strand, within ECD_01302 at 1376.034 kb on + strand, within ECD_01302 at 1376.130 kb on + strand, within ECD_01302 at 1376.131 kb on - strand, within ECD_01302 at 1376.589 kb on - strand, within ECD_01303 at 1376.988 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnN remove 1,374,303 + ECD_01300 0.79 -0.1 1,374,307 + ECD_01300 0.79 -1.0 1,374,352 + ECD_01300 0.82 +0.0 1,374,669 - +0.8 1,374,827 - ECD_01301 0.31 +0.6 1,374,933 - ECD_01301 0.51 -0.1 1,375,334 + +0.1 1,375,334 + +0.8 1,375,334 + -0.7 1,375,334 + +0.3 1,375,413 + ECD_01302 0.12 -0.7 1,375,414 - ECD_01302 0.12 +0.9 1,375,983 + ECD_01302 0.71 +1.6 1,376,034 + ECD_01302 0.76 +0.7 1,376,130 + ECD_01302 0.86 -0.3 1,376,131 - ECD_01302 0.86 -0.1 1,376,589 - ECD_01303 0.48 -0.3 1,376,988 - -0.1
Or see this region's nucleotide sequence