Experiment: Control_TnN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01214 and ECD_01215 are separated by 301 nucleotides ECD_01215 and ECD_01216 are separated by 476 nucleotides
ECD_01214: ECD_01214 - thymidine kinase/deoxyuridine kinase, at 1,281,318 to 1,281,935
_01214
ECD_01215: ECD_01215 - fused acetaldehyde-CoA dehydrogenase/iron-dependent alcohol dehydrogenase/pyruvate-formate lyase deactivase, at 1,282,237 to 1,284,912
_01215
ECD_01216: ECD_01216 - UPF0056 family inner membrane protein, at 1,285,389 to 1,286,036
_01216
Position (kb)
1282
1283
1284
1285 Strain fitness (log2 ratio)
-1
0
1 at 1282.045 kb on + strand at 1282.100 kb on + strand at 1282.329 kb on - strand at 1282.617 kb on - strand, within ECD_01215 at 1282.662 kb on - strand, within ECD_01215 at 1282.675 kb on - strand, within ECD_01215 at 1283.040 kb on - strand, within ECD_01215 at 1283.040 kb on - strand, within ECD_01215 at 1283.113 kb on - strand, within ECD_01215 at 1283.172 kb on - strand, within ECD_01215 at 1283.238 kb on - strand, within ECD_01215 at 1283.238 kb on - strand, within ECD_01215 at 1283.238 kb on - strand, within ECD_01215 at 1283.238 kb on - strand, within ECD_01215 at 1283.430 kb on - strand, within ECD_01215 at 1283.488 kb on - strand, within ECD_01215 at 1283.532 kb on - strand, within ECD_01215 at 1283.686 kb on - strand, within ECD_01215 at 1283.830 kb on - strand, within ECD_01215 at 1284.235 kb on - strand, within ECD_01215 at 1284.553 kb on - strand, within ECD_01215 at 1284.553 kb on - strand, within ECD_01215 at 1284.684 kb on - strand at 1284.690 kb on - strand at 1285.557 kb on - strand, within ECD_01216 at 1285.607 kb on + strand, within ECD_01216 at 1285.694 kb on + strand, within ECD_01216 at 1285.829 kb on + strand, within ECD_01216
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnN remove 1,282,045 + +0.6 1,282,100 + -0.5 1,282,329 - +0.4 1,282,617 - ECD_01215 0.14 +0.2 1,282,662 - ECD_01215 0.16 +0.5 1,282,675 - ECD_01215 0.16 -0.4 1,283,040 - ECD_01215 0.30 +0.8 1,283,040 - ECD_01215 0.30 +1.0 1,283,113 - ECD_01215 0.33 -0.5 1,283,172 - ECD_01215 0.35 +0.7 1,283,238 - ECD_01215 0.37 -0.2 1,283,238 - ECD_01215 0.37 -0.4 1,283,238 - ECD_01215 0.37 +0.1 1,283,238 - ECD_01215 0.37 +0.8 1,283,430 - ECD_01215 0.45 -0.7 1,283,488 - ECD_01215 0.47 +0.3 1,283,532 - ECD_01215 0.48 +0.8 1,283,686 - ECD_01215 0.54 -0.2 1,283,830 - ECD_01215 0.60 +0.7 1,284,235 - ECD_01215 0.75 +0.7 1,284,553 - ECD_01215 0.87 +0.2 1,284,553 - ECD_01215 0.87 +0.4 1,284,684 - -0.2 1,284,690 - +0.5 1,285,557 - ECD_01216 0.26 +0.6 1,285,607 + ECD_01216 0.34 -1.2 1,285,694 + ECD_01216 0.47 -0.9 1,285,829 + ECD_01216 0.68 +0.1
Or see this region's nucleotide sequence